Wall clock time and date at job start Tue Mar 31 2020 12:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47369 * 239.99792 * 2 1 3 5 5 N 1.46495 * 109.47347 * 185.00096 * 4 2 1 6 6 C 1.46506 * 119.99907 * 270.00256 * 5 4 2 7 7 C 1.36938 * 120.00008 * 89.99921 * 5 4 2 8 8 H 1.07998 * 119.99435 * 20.29845 * 7 5 4 9 9 C 1.38807 * 120.00023 * 200.29339 * 7 5 4 10 10 N 1.31618 * 120.00060 * 15.02686 * 9 7 5 11 11 Si 1.86800 * 119.99931 * 195.02197 * 9 7 5 12 12 H 1.48506 * 109.46888 * 85.01451 * 11 9 7 13 13 H 1.48503 * 109.47219 * 205.00679 * 11 9 7 14 14 H 1.48495 * 109.47412 * 325.01408 * 11 9 7 15 15 N 1.46503 * 109.46966 * 119.99911 * 2 1 3 16 16 C 1.34774 * 120.00048 * 275.00054 * 15 2 1 17 17 O 1.21605 * 119.99944 * 359.97438 * 16 15 2 18 18 C 1.47391 * 120.00116 * 180.02562 * 16 15 2 19 19 C 1.38879 * 120.01426 * 0.02562 * 18 16 15 20 20 C 1.38236 * 120.45642 * 179.97438 * 19 18 16 21 21 C 1.37961 * 120.27821 * 359.97438 * 20 19 18 22 22 C 1.39190 * 120.44943 * 0.04375 * 21 20 19 23 23 S 1.76140 * 131.63717 * 179.97438 * 22 21 20 24 24 C 1.70676 * 90.71593 * 179.97438 * 23 22 21 25 25 N 1.28165 * 111.37641 * 0.02562 * 24 23 22 26 26 C 1.33649 * 118.01754 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47220 * 59.99835 * 1 2 3 28 28 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47318 * 300.00324 * 1 2 3 30 30 H 1.08998 * 109.47434 * 305.00646 * 4 2 1 31 31 H 1.09007 * 109.46685 * 65.00170 * 4 2 1 32 32 H 1.08999 * 109.47082 * 95.10372 * 6 5 4 33 33 H 1.09001 * 109.46729 * 215.10408 * 6 5 4 34 34 H 1.08996 * 109.46930 * 335.10285 * 6 5 4 35 35 H 0.97005 * 120.00254 * 179.97438 * 10 9 7 36 36 H 0.97004 * 119.99777 * 95.00337 * 15 2 1 37 37 H 1.07999 * 119.77136 * 0.02562 * 19 18 16 38 38 H 1.07993 * 119.86116 * 180.02562 * 20 19 18 39 39 H 1.07990 * 119.77433 * 180.02562 * 21 20 19 40 40 H 1.07995 * 124.31882 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0850 -1.9159 -0.6022 8 1 3.5227 -2.8297 -0.4788 9 6 5.4004 -1.8457 -0.1646 10 7 5.9904 -0.6760 -0.0382 11 14 6.3332 -3.4114 0.2451 12 1 6.9257 -3.9735 -0.9952 13 1 7.4148 -3.1038 1.2151 14 1 5.4007 -4.4017 0.8410 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8582 1.1617 2.4116 18 6 2.6388 -0.7129 3.5605 19 6 2.9702 -2.0601 3.4982 20 6 3.4328 -2.7205 4.6211 21 6 3.5707 -2.0466 5.8170 22 6 3.2455 -0.6963 5.9073 23 16 3.3050 0.4341 7.2568 24 6 2.7215 1.6896 6.2588 25 7 2.5159 1.2782 5.0625 26 6 2.7747 -0.0036 4.7863 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2952 31 1 1.7517 -0.1583 -2.1370 32 1 4.6152 0.9371 -0.9770 33 1 5.2331 -0.2045 -2.1949 34 1 3.7755 0.7585 -2.5363 35 1 6.9095 -0.6269 0.2680 36 1 2.2490 -1.6318 1.1526 37 1 2.8665 -2.5954 2.5660 38 1 3.6881 -3.7682 4.5617 39 1 3.9333 -2.5704 6.6890 40 1 2.5469 2.7017 6.5927 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:47 Heat of formation + Delta-G solvation = 55.116834 kcal Electronic energy + Delta-G solvation = -24984.518138 eV Core-core repulsion = 21506.056417 eV Total energy + Delta-G solvation = -3478.461720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50688 -38.71953 -36.71222 -36.17816 -33.91639 -31.92808 -30.88044 -29.80762 -29.56073 -26.16841 -25.60649 -24.97912 -23.98127 -21.97966 -21.33437 -20.61473 -19.66092 -18.44958 -17.01387 -16.56427 -16.24169 -15.72813 -15.13331 -14.97302 -14.89763 -14.73068 -14.06975 -13.73081 -13.67121 -13.31435 -13.00732 -12.82996 -12.53126 -12.20147 -12.00612 -11.87526 -11.69144 -11.37847 -11.29716 -11.15606 -10.87119 -10.71801 -10.38455 -10.24366 -10.06746 -9.98133 -9.83302 -9.54830 -9.05527 -8.69591 -8.58191 -8.25261 -7.98344 -6.80937 -5.75257 -3.19469 0.33292 0.98093 1.27849 1.71692 2.49127 3.27403 3.29905 3.37424 3.40838 3.82465 4.09057 4.21141 4.43796 4.68220 4.94831 5.07851 5.25228 5.26350 5.34606 5.49619 5.54444 5.69237 5.79662 5.94081 6.01805 6.08117 6.18331 6.19359 6.27370 6.33581 6.47494 6.57412 6.65247 6.75499 6.91890 7.33278 7.37557 7.67811 7.76382 7.79418 8.32971 8.35286 9.01253 9.18169 9.83559 10.33391 11.28763 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.005264 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.377021 B = 5317.890234 C = 6585.047799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.895 5.895 11 Si 0.893 3.107 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.684 5.684 16 C 0.553 3.447 17 O -0.527 6.527 18 C -0.062 4.062 19 C -0.065 4.065 20 C -0.105 4.105 21 C -0.058 4.058 22 C -0.187 4.187 23 S 0.071 5.929 24 C 0.065 3.935 25 N -0.429 5.429 26 C 0.125 3.875 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.042 0.958 34 H -0.003 1.003 35 H 0.252 0.748 36 H 0.401 0.599 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -2.411 11.273 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.335 5.335 16 C 0.338 3.662 17 O -0.405 6.405 18 C -0.068 4.068 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.081 4.081 22 C -0.306 4.306 23 S 0.324 5.676 24 C -0.240 4.240 25 N -0.139 5.139 26 C 0.003 3.997 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.238 0.762 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.339 -1.079 11.960 14.074 hybrid contribution 0.880 -1.495 -0.456 1.793 sum -6.459 -2.574 11.505 13.442 Atomic orbital electron populations 1.22157 0.96883 1.01211 1.01585 1.21830 0.91778 0.98465 0.86768 0.90468 1.21189 0.85910 0.97891 0.93634 1.43904 0.98916 1.22659 1.66537 1.20791 0.92860 0.90436 0.94047 1.19036 0.95929 0.89833 1.34052 0.91573 1.24936 0.98548 0.96051 0.99654 1.70091 1.12728 1.21731 1.49295 0.86463 0.80136 0.83178 0.77894 1.21488 1.21814 1.20415 1.45642 1.65238 1.14177 1.08406 1.17800 0.78666 0.86686 0.83000 1.90776 1.49940 1.14834 1.84932 1.19780 1.01705 0.93308 0.91995 1.21375 0.95112 0.92849 0.99341 1.21093 0.99168 1.00574 0.91773 1.20403 0.98446 0.90600 0.98659 1.23804 1.09880 1.00056 0.96861 1.83788 1.67241 1.02958 1.13628 1.28350 1.00380 1.04312 0.90920 1.65931 1.16375 1.13751 1.17878 1.18765 0.99808 0.87779 0.93354 0.92257 0.93046 0.92911 0.93333 0.92904 0.95299 0.93906 0.98421 0.93741 0.76245 0.83804 0.84159 0.85021 0.78091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 37.16 0.35 -2.13 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.09 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.73 5.36 -4.04 -0.02 2.71 16 5 N -0.60 -14.16 2.82 -181.12 -0.51 -14.67 16 6 C 0.16 4.00 9.02 59.85 0.54 4.54 16 7 C -0.26 -6.45 8.02 -15.06 -0.12 -6.57 16 8 H 0.07 1.56 7.86 -52.49 -0.41 1.15 16 9 C 0.01 0.20 5.06 -17.43 -0.09 0.11 16 10 N -0.89 -25.41 10.67 55.49 0.59 -24.82 16 11 Si 0.89 20.55 29.58 -169.99 -5.03 15.52 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 N -0.68 -13.60 4.43 -54.89 -0.24 -13.84 16 16 C 0.55 11.98 7.72 -12.54 -0.10 11.88 16 17 O -0.53 -13.00 15.44 5.27 0.08 -12.92 16 18 C -0.06 -1.19 5.92 -104.39 -0.62 -1.81 16 19 C -0.07 -1.05 9.50 -39.34 -0.37 -1.42 16 20 C -0.10 -1.38 10.02 -39.68 -0.40 -1.78 16 21 C -0.06 -0.75 10.05 -39.33 -0.40 -1.15 16 22 C -0.19 -2.85 6.55 -38.59 -0.25 -3.10 16 23 S 0.07 0.85 23.18 -107.50 -2.49 -1.64 16 24 C 0.07 0.89 12.12 51.23 0.62 1.51 16 25 N -0.43 -8.02 9.43 -12.74 -0.12 -8.14 16 26 C 0.13 2.34 6.73 -84.89 -0.57 1.77 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 32 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 34 H 0.00 -0.06 7.83 -51.93 -0.41 -0.47 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.40 7.58 5.39 -40.82 -0.22 7.36 16 37 H 0.14 2.18 6.34 -52.49 -0.33 1.84 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -33.43 347.72 -9.12 -42.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.02 Total: 6.06 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.62 Total: 6.66 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.28 Total: -61.47 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.43 -9.12 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.668 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds