Wall clock time and date at job start Tue Mar 31 2020 12:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47369 * 239.99792 * 2 1 3 5 5 N 1.46495 * 109.47347 * 185.00096 * 4 2 1 6 6 C 1.46506 * 119.99907 * 270.00256 * 5 4 2 7 7 C 1.36938 * 120.00008 * 89.99921 * 5 4 2 8 8 H 1.07998 * 119.99435 * 20.29845 * 7 5 4 9 9 C 1.38807 * 120.00023 * 200.29339 * 7 5 4 10 10 N 1.31618 * 120.00060 * 15.02686 * 9 7 5 11 11 Si 1.86800 * 119.99931 * 195.02197 * 9 7 5 12 12 H 1.48506 * 109.46888 * 85.01451 * 11 9 7 13 13 H 1.48503 * 109.47219 * 205.00679 * 11 9 7 14 14 H 1.48495 * 109.47412 * 325.01408 * 11 9 7 15 15 N 1.46503 * 109.46966 * 119.99911 * 2 1 3 16 16 C 1.34774 * 120.00048 * 275.00054 * 15 2 1 17 17 O 1.21605 * 119.99944 * 359.97438 * 16 15 2 18 18 C 1.47391 * 120.00116 * 180.02562 * 16 15 2 19 19 C 1.38879 * 120.01426 * 0.02562 * 18 16 15 20 20 C 1.38236 * 120.45642 * 179.97438 * 19 18 16 21 21 C 1.37961 * 120.27821 * 359.97438 * 20 19 18 22 22 C 1.39190 * 120.44943 * 0.04375 * 21 20 19 23 23 S 1.76140 * 131.63717 * 179.97438 * 22 21 20 24 24 C 1.70676 * 90.71593 * 179.97438 * 23 22 21 25 25 N 1.28165 * 111.37641 * 0.02562 * 24 23 22 26 26 C 1.33649 * 118.01754 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47220 * 59.99835 * 1 2 3 28 28 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47318 * 300.00324 * 1 2 3 30 30 H 1.08998 * 109.47434 * 305.00646 * 4 2 1 31 31 H 1.09007 * 109.46685 * 65.00170 * 4 2 1 32 32 H 1.08999 * 109.47082 * 95.10372 * 6 5 4 33 33 H 1.09001 * 109.46729 * 215.10408 * 6 5 4 34 34 H 1.08996 * 109.46930 * 335.10285 * 6 5 4 35 35 H 0.97005 * 120.00254 * 179.97438 * 10 9 7 36 36 H 0.97004 * 119.99777 * 95.00337 * 15 2 1 37 37 H 1.07999 * 119.77136 * 0.02562 * 19 18 16 38 38 H 1.07993 * 119.86116 * 180.02562 * 20 19 18 39 39 H 1.07990 * 119.77433 * 180.02562 * 21 20 19 40 40 H 1.07995 * 124.31882 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0850 -1.9159 -0.6022 8 1 3.5227 -2.8297 -0.4788 9 6 5.4004 -1.8457 -0.1646 10 7 5.9904 -0.6760 -0.0382 11 14 6.3332 -3.4114 0.2451 12 1 6.9257 -3.9735 -0.9952 13 1 7.4148 -3.1038 1.2151 14 1 5.4007 -4.4017 0.8410 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8582 1.1617 2.4116 18 6 2.6388 -0.7129 3.5605 19 6 2.9702 -2.0601 3.4982 20 6 3.4328 -2.7205 4.6211 21 6 3.5707 -2.0466 5.8170 22 6 3.2455 -0.6963 5.9073 23 16 3.3050 0.4341 7.2568 24 6 2.7215 1.6896 6.2588 25 7 2.5159 1.2782 5.0625 26 6 2.7747 -0.0036 4.7863 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2952 31 1 1.7517 -0.1583 -2.1370 32 1 4.6152 0.9371 -0.9770 33 1 5.2331 -0.2045 -2.1949 34 1 3.7755 0.7585 -2.5363 35 1 6.9095 -0.6269 0.2680 36 1 2.2490 -1.6318 1.1526 37 1 2.8665 -2.5954 2.5660 38 1 3.6881 -3.7682 4.5617 39 1 3.9333 -2.5704 6.6890 40 1 2.5469 2.7017 6.5927 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:46 Heat of formation + Delta-G solvation = 32.769035 kcal Electronic energy + Delta-G solvation = -24985.487211 eV Core-core repulsion = 21506.056417 eV Total energy + Delta-G solvation = -3479.430794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73282 -40.22719 -37.99311 -37.79402 -35.67410 -33.45831 -32.55468 -31.00065 -30.92444 -28.04592 -27.36462 -26.10085 -25.24498 -23.60418 -22.68040 -22.01616 -21.24673 -19.73041 -18.67041 -18.06543 -17.45742 -17.11283 -16.76643 -16.39582 -16.19789 -15.94087 -15.64851 -15.33717 -15.14593 -14.76906 -14.63587 -14.41227 -13.85783 -13.61118 -13.37425 -13.10118 -13.08812 -12.89119 -12.84779 -12.70147 -12.48699 -12.26393 -12.15647 -11.93450 -11.92553 -11.66064 -11.13669 -10.89396 -10.57309 -10.42284 -9.85600 -9.78552 -9.10018 -8.77544 -7.74504 -5.20635 -0.80726 -0.17367 0.26842 0.63795 1.39365 1.48387 1.53183 1.59862 1.89153 2.37875 2.56349 2.82637 3.05702 3.40804 3.55480 3.73173 3.86504 3.95844 4.16525 4.18812 4.20263 4.42461 4.49926 4.53936 4.65226 4.75881 4.83362 4.90308 4.98634 5.01256 5.05522 5.18980 5.21875 5.31775 5.39455 5.59483 5.66705 5.73211 5.78423 6.35392 6.66150 6.79326 7.18109 7.44190 7.91915 8.38623 9.29408 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.005264 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.377021 B = 5317.890234 C = 6585.047799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.121 3.879 3 H 0.035 0.965 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.247 4.247 8 H 0.086 0.914 9 C -0.050 4.050 10 N -0.937 5.937 11 Si 0.952 3.048 12 H -0.295 1.295 13 H -0.309 1.309 14 H -0.245 1.245 15 N -0.681 5.681 16 C 0.545 3.455 17 O -0.574 6.574 18 C -0.112 4.112 19 C -0.064 4.064 20 C -0.106 4.106 21 C -0.042 4.042 22 C -0.215 4.215 23 S 0.157 5.843 24 C 0.062 3.938 25 N -0.496 5.496 26 C 0.096 3.904 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.074 0.926 32 H -0.013 1.013 33 H 0.019 0.981 34 H 0.028 0.972 35 H 0.239 0.761 36 H 0.405 0.595 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -5.232 12.955 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.053 0.947 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.377 4.377 8 H 0.104 0.896 9 C -0.245 4.245 10 N -0.584 5.584 11 Si 0.781 3.219 12 H -0.222 1.222 13 H -0.236 1.236 14 H -0.169 1.169 15 N -0.331 5.331 16 C 0.332 3.668 17 O -0.455 6.455 18 C -0.118 4.118 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.334 4.334 23 S 0.411 5.589 24 C -0.241 4.241 25 N -0.208 5.208 26 C -0.026 4.026 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.006 0.994 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.243 0.757 37 H 0.165 0.835 38 H 0.198 0.802 39 H 0.192 0.808 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.171 -3.948 13.645 16.387 hybrid contribution 1.085 -0.568 -0.880 1.508 sum -7.086 -4.515 12.765 15.283 Atomic orbital electron populations 1.22018 0.93753 1.02776 1.01834 1.21758 0.94144 0.96083 0.86680 0.94713 1.21397 0.83269 0.99562 0.94202 1.44170 1.00827 1.22088 1.66273 1.20471 0.92783 0.90003 0.93374 1.19479 0.95804 0.90634 1.31798 0.89592 1.25672 0.99771 0.98397 1.00649 1.70319 1.12212 1.24071 1.51820 0.85497 0.78850 0.80623 0.76960 1.22241 1.23611 1.16881 1.45659 1.64929 1.14230 1.08286 1.18353 0.77913 0.86401 0.84148 1.90719 1.52226 1.16783 1.85815 1.19788 1.05483 0.94920 0.91616 1.21555 0.94497 0.91697 1.00724 1.21540 0.98156 1.02250 0.90751 1.20975 0.95834 0.89664 0.99942 1.24286 1.09996 1.01599 0.97496 1.83383 1.65122 1.00017 1.10422 1.28995 0.98384 1.06392 0.90329 1.65944 1.19489 1.14819 1.20568 1.19009 1.00820 0.88441 0.94316 0.89877 0.90701 0.94797 0.90844 0.90748 0.99422 0.96257 0.95345 0.95125 0.75726 0.83522 0.80201 0.80795 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.48 71.98 0.68 -3.72 16 2 C 0.12 4.69 2.88 44.99 0.13 4.82 16 3 H 0.03 1.64 7.58 -2.38 -0.02 1.62 16 4 C 0.14 5.27 5.36 86.38 0.46 5.73 16 5 N -0.61 -28.88 2.82 -726.93 -2.05 -30.93 16 6 C 0.18 9.04 9.02 127.77 1.15 10.19 16 7 C -0.25 -12.14 8.02 84.03 0.67 -11.47 16 8 H 0.09 3.84 7.86 -2.91 -0.02 3.82 16 9 C -0.05 -2.63 5.06 84.86 0.43 -2.21 16 10 N -0.94 -55.47 10.67 21.65 0.23 -55.24 16 11 Si 0.95 41.95 29.58 68.60 2.03 43.98 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 15 N -0.68 -27.81 4.43 -445.83 -1.98 -29.78 16 16 C 0.54 24.99 7.72 86.65 0.67 25.66 16 17 O -0.57 -30.56 15.44 -4.05 -0.06 -30.62 16 18 C -0.11 -4.47 5.92 -19.71 -0.12 -4.59 16 19 C -0.06 -2.01 9.50 22.42 0.21 -1.79 16 20 C -0.11 -2.48 10.02 22.20 0.22 -2.26 16 21 C -0.04 -0.95 10.05 22.43 0.23 -0.72 16 22 C -0.21 -6.20 6.55 22.91 0.15 -6.05 16 23 S 0.16 3.35 23.18 -56.49 -1.31 2.04 16 24 C 0.06 1.66 12.12 130.78 1.58 3.24 16 25 N -0.50 -19.25 9.43 -194.19 -1.83 -21.08 16 26 C 0.10 3.70 6.73 40.28 0.27 3.97 16 27 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 2.39 8.03 -2.39 -0.02 2.38 16 31 H 0.07 2.45 7.86 -2.38 -0.02 2.43 16 32 H -0.01 -0.74 7.40 -2.39 -0.02 -0.75 16 33 H 0.02 1.02 7.21 -2.39 -0.02 1.01 16 34 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 35 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 36 H 0.41 15.33 5.39 -92.71 -0.50 14.83 16 37 H 0.15 4.32 6.34 -2.91 -0.02 4.30 16 38 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.17 2.39 8.06 -2.92 -0.02 2.37 16 40 H 0.23 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -79.50 347.72 2.35 -77.15 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.57 Total: 23.68 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.75 Total: 20.81 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -5.63 Total: -137.03 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -79.50 2.35 -77.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.915 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds