Wall clock time and date at job start Tue Mar 31 2020 12:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47578 * 2 1 4 4 C 1.53009 * 109.46426 * 119.99775 * 2 1 3 5 5 N 1.46504 * 109.46767 * 175.00163 * 4 2 1 6 6 C 1.46503 * 119.99545 * 270.00046 * 5 4 2 7 7 C 1.36936 * 120.00317 * 89.99913 * 5 4 2 8 8 H 1.07996 * 119.99539 * 20.38356 * 7 5 4 9 9 C 1.38804 * 120.00354 * 200.38097 * 7 5 4 10 10 N 1.31629 * 120.00034 * 15.00372 * 9 7 5 11 11 Si 1.86797 * 120.00515 * 195.00611 * 9 7 5 12 12 H 1.48500 * 109.47165 * 84.99524 * 11 9 7 13 13 H 1.48497 * 109.47226 * 205.00109 * 11 9 7 14 14 H 1.48507 * 109.46541 * 325.00124 * 11 9 7 15 15 N 1.46493 * 109.47406 * 239.99381 * 2 1 3 16 16 C 1.34778 * 119.99699 * 85.00576 * 15 2 1 17 17 O 1.21618 * 120.00103 * 359.97438 * 16 15 2 18 18 C 1.47388 * 120.00117 * 180.02562 * 16 15 2 19 19 N 1.29685 * 121.82472 * 0.02562 * 18 16 15 20 20 S 1.56005 * 111.74016 * 179.97438 * 19 18 16 21 21 C 1.76254 * 97.56078 * 359.97438 * 20 19 18 22 22 C 1.38696 * 134.18817 * 180.02562 * 21 20 19 23 23 C 1.36809 * 119.63063 * 179.97438 * 22 21 20 24 24 C 1.38904 * 120.30476 * 0.02838 * 23 22 21 25 25 C 1.36332 * 121.03612 * 359.96769 * 24 23 22 26 26 C 1.40414 * 119.96213 * 359.74032 * 25 24 23 27 27 H 1.09007 * 109.46494 * 60.00177 * 1 2 3 28 28 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47491 * 300.00386 * 1 2 3 30 30 H 1.08992 * 109.47152 * 294.99887 * 4 2 1 31 31 H 1.08999 * 109.47137 * 55.00127 * 4 2 1 32 32 H 1.09004 * 109.47174 * 95.13359 * 6 5 4 33 33 H 1.09002 * 109.46943 * 215.12920 * 6 5 4 34 34 H 1.09001 * 109.47360 * 335.12563 * 6 5 4 35 35 H 0.96998 * 120.00121 * 179.97438 * 10 9 7 36 36 H 0.96998 * 120.00711 * 265.00340 * 15 2 1 37 37 H 1.08004 * 120.18786 * 359.95289 * 22 21 20 38 38 H 1.07999 * 119.84613 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.47903 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.01975 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 3.5000 -0.8264 1.1908 6 6 4.1257 -1.9921 0.5615 7 6 4.2798 0.1648 1.7242 8 1 3.8670 0.8401 2.4590 9 6 5.6008 0.3015 1.3207 10 7 6.0234 -0.3086 0.2335 11 14 6.7790 1.3512 2.3203 12 1 7.3496 0.5395 3.4252 13 1 7.8759 1.8353 1.4441 14 1 6.0480 2.5134 2.8863 15 7 2.0184 -0.6907 -1.1960 16 6 2.1472 -0.0184 -2.3570 17 8 1.8576 1.1615 -2.4118 18 6 2.6380 -0.7133 -3.5605 19 7 2.9555 -1.9706 -3.5425 20 16 3.4442 -2.4632 -4.9398 21 6 3.2738 -0.9331 -5.7978 22 6 3.5069 -0.5253 -7.1028 23 6 3.2655 0.7733 -7.4590 24 6 2.7901 1.6807 -6.5209 25 6 2.5540 1.3013 -5.2329 26 6 2.7865 -0.0263 -4.8390 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7515 -0.1583 2.1370 31 1 1.6052 -1.7198 1.2953 32 1 4.3628 -1.7608 -0.4770 33 1 5.0415 -2.2454 1.0955 34 1 3.4383 -2.8373 0.5977 35 1 6.9464 -0.2127 -0.0487 36 1 2.2491 -1.6318 -1.1525 37 1 3.8773 -1.2290 -7.8337 38 1 3.4461 1.0947 -8.4741 39 1 2.6037 2.7025 -6.8167 40 1 2.1840 2.0203 -4.5170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:39 Heat of formation + Delta-G solvation = 45.308800 kcal Electronic energy + Delta-G solvation = -24607.210933 eV Core-core repulsion = 21128.323904 eV Total energy + Delta-G solvation = -3478.887029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40227 -38.85443 -36.84982 -36.22882 -34.02863 -31.35135 -31.13947 -30.58978 -30.09018 -26.14832 -25.94431 -25.50663 -23.16047 -22.60297 -21.52720 -20.19228 -19.85005 -18.60125 -17.29077 -16.79241 -16.32715 -15.42450 -15.26021 -15.16324 -14.87873 -14.62395 -14.06385 -13.89047 -13.60500 -13.46885 -13.13551 -12.84275 -12.32823 -12.17569 -12.12765 -11.92316 -11.75777 -11.43215 -11.07927 -11.07157 -10.83087 -10.76515 -10.68179 -10.51511 -10.18019 -9.95073 -9.81440 -9.80409 -9.46720 -9.09108 -8.59944 -8.39125 -7.82834 -6.75583 -5.69361 -3.13138 0.42623 1.07064 1.36504 1.74046 1.86313 3.38895 3.41199 3.47168 3.48458 3.57951 3.81879 4.37953 4.53327 4.68515 4.84999 5.12468 5.25122 5.35719 5.42387 5.44155 5.49688 5.69833 5.84656 5.88075 5.98594 5.99956 6.09481 6.11477 6.24905 6.32392 6.43925 6.48932 6.53796 6.68719 6.75454 6.87102 7.13969 7.36640 7.72738 7.83774 8.07641 8.40198 8.68761 9.25096 9.88728 10.35972 11.35617 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004323 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.379911 B = 6475.907392 C = 6977.331755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.089 0.911 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.070 0.930 9 C 0.004 3.996 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.674 5.674 16 C 0.591 3.409 17 O -0.539 6.539 18 C 0.104 3.896 19 N -0.481 5.481 20 S 0.373 5.627 21 C -0.200 4.200 22 C -0.077 4.077 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.038 4.038 26 C -0.086 4.086 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.005 1.005 35 H 0.251 0.749 36 H 0.404 0.596 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -2.820 -14.498 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.107 0.893 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.087 0.913 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.323 5.323 16 C 0.371 3.629 17 O -0.416 6.416 18 C -0.085 4.085 19 N -0.306 5.306 20 S 0.532 5.468 21 C -0.321 4.321 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.060 4.060 26 C -0.096 4.096 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.240 0.760 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.044 -4.248 -14.050 16.738 hybrid contribution 0.642 1.905 0.322 2.036 sum -7.401 -2.342 -13.728 15.771 Atomic orbital electron populations 1.22154 0.96582 1.01246 1.01824 1.22006 0.91887 0.99282 0.86134 0.89314 1.21199 0.85832 0.97323 0.94214 1.43939 0.99045 1.20923 1.68050 1.20850 0.94461 0.85037 0.97962 1.19181 0.92940 1.09739 1.16734 0.91258 1.24947 0.98613 0.99425 0.96470 1.70090 1.15854 1.46717 1.22101 0.86296 0.80961 0.80030 0.79392 1.21542 1.21882 1.20562 1.45666 1.63937 1.14217 1.08500 1.17010 0.78105 0.85828 0.81944 1.90714 1.51606 1.14704 1.84533 1.22065 1.02723 0.88329 0.95380 1.71468 1.17492 1.17004 1.24612 1.81285 1.61046 1.10827 0.93665 1.24299 1.06790 1.01518 0.99486 1.19890 1.00766 0.96610 0.92620 1.21027 0.97860 0.92870 0.99792 1.20884 1.00301 1.00235 0.93000 1.20867 0.95365 0.93399 0.96359 1.19639 1.03305 0.95934 0.90758 0.92873 0.93117 0.91853 0.92044 0.93934 0.94862 0.93892 0.98663 0.93916 0.76023 0.85044 0.85034 0.85071 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.11 2.20 2.88 -67.93 -0.20 2.00 16 3 H 0.09 2.01 7.58 -51.93 -0.39 1.61 16 4 C 0.14 2.84 5.33 -4.03 -0.02 2.81 16 5 N -0.60 -14.77 2.78 -181.11 -0.50 -15.28 16 6 C 0.16 3.95 7.60 59.85 0.45 4.41 16 7 C -0.26 -7.07 9.68 -15.06 -0.15 -7.21 16 8 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 9 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 10 N -0.90 -26.73 10.67 55.49 0.59 -26.13 16 11 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 N -0.67 -13.38 4.42 -54.89 -0.24 -13.62 16 16 C 0.59 12.19 7.77 -12.54 -0.10 12.09 16 17 O -0.54 -11.90 14.67 5.26 0.08 -11.82 16 18 C 0.10 1.93 6.82 -81.99 -0.56 1.38 16 19 N -0.48 -8.40 10.49 28.24 0.30 -8.10 16 20 S 0.37 5.12 23.36 -107.50 -2.51 2.61 16 21 C -0.20 -2.79 6.73 -38.49 -0.26 -3.05 16 22 C -0.08 -0.83 10.03 -39.93 -0.40 -1.23 16 23 C -0.09 -0.91 10.00 -39.85 -0.40 -1.30 16 24 C -0.12 -1.40 9.93 -40.02 -0.40 -1.80 16 25 C -0.04 -0.56 9.57 -39.45 -0.38 -0.94 16 26 C -0.09 -1.42 6.10 -105.09 -0.64 -2.06 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 31 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 32 H 0.03 0.89 6.97 -51.93 -0.36 0.52 16 33 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 34 H -0.01 -0.11 7.83 -51.93 -0.41 -0.52 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.40 7.88 6.62 -40.82 -0.27 7.61 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.15 2.31 6.64 -52.49 -0.35 1.97 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -32.53 347.79 -9.92 -42.45 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.06 Total: 4.26 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.77 Total: 3.04 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.14 Total: -63.13 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -2.51 Total: 2.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.53 -9.92 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.759 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds