Wall clock time and date at job start Tue Mar 31 2020 12:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47056 * 2 1 4 4 C 1.53001 * 109.46487 * 240.00451 * 2 1 3 5 5 N 1.46503 * 109.46632 * 184.99835 * 4 2 1 6 6 C 1.46504 * 120.00049 * 269.99931 * 5 4 2 7 7 C 1.36935 * 120.00189 * 90.00454 * 5 4 2 8 8 H 1.08007 * 120.00029 * 22.33437 * 7 5 4 9 9 C 1.38814 * 120.00457 * 202.33859 * 7 5 4 10 10 N 1.31619 * 119.99585 * 11.35670 * 9 7 5 11 11 Si 1.86794 * 120.00233 * 191.36594 * 9 7 5 12 12 H 1.48504 * 109.47359 * 59.99417 * 11 9 7 13 13 H 1.48501 * 109.47369 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47091 * 299.99636 * 11 9 7 15 15 N 1.46495 * 109.47104 * 120.00577 * 2 1 3 16 16 C 1.34771 * 119.99993 * 274.99499 * 15 2 1 17 17 O 1.21609 * 120.00300 * 0.02562 * 16 15 2 18 18 C 1.47385 * 119.99917 * 180.02562 * 16 15 2 19 19 N 1.29679 * 121.83075 * 359.71627 * 18 16 15 20 20 S 1.56006 * 111.74502 * 179.86985 * 19 18 16 21 21 C 1.76254 * 97.55807 * 0.34047 * 20 19 18 22 22 C 1.38701 * 134.18239 * 179.79142 * 21 20 19 23 23 C 1.36797 * 119.62864 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.30549 * 0.02562 * 23 22 21 25 25 C 1.36329 * 121.03741 * 359.95718 * 24 23 22 26 26 C 1.40413 * 119.96264 * 0.04035 * 25 24 23 27 27 H 1.08997 * 109.47561 * 59.99001 * 1 2 3 28 28 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46963 * 299.99417 * 1 2 3 30 30 H 1.08994 * 109.47313 * 304.99849 * 4 2 1 31 31 H 1.09004 * 109.47053 * 65.00167 * 4 2 1 32 32 H 1.08997 * 109.46883 * 94.22840 * 6 5 4 33 33 H 1.09002 * 109.46706 * 214.23059 * 6 5 4 34 34 H 1.09001 * 109.46779 * 334.22579 * 6 5 4 35 35 H 0.96997 * 119.99908 * 179.97438 * 10 9 7 36 36 H 0.97002 * 120.00012 * 95.00504 * 15 2 1 37 37 H 1.08006 * 120.18221 * 359.97438 * 22 21 20 38 38 H 1.08000 * 119.85098 * 179.97438 * 23 22 21 39 39 H 1.08008 * 119.48268 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.02327 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 -1.2494 5 7 3.4999 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0849 -1.9158 -0.6026 8 1 3.5337 -2.8400 -0.5090 9 6 5.3862 -1.8327 -0.1267 10 7 5.9794 -0.6614 -0.0341 11 14 6.2956 -3.3830 0.3821 12 1 6.3967 -4.3016 -0.7804 13 1 7.6588 -3.0261 0.8505 14 1 5.5543 -4.0539 1.4801 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3570 17 8 1.8575 1.1614 2.4119 18 6 2.6389 -0.7132 3.5602 19 7 2.9527 -1.9714 3.5432 20 16 3.4471 -2.4626 4.9389 21 6 3.2766 -0.9326 5.7970 22 6 3.5104 -0.5248 7.1020 23 6 3.2686 0.7736 7.4584 24 6 2.7911 1.6805 6.5208 25 6 2.5547 1.3013 5.2329 26 6 2.7934 -0.0247 4.8373 27 1 -0.3634 0.5140 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6052 -1.7197 -1.2953 31 1 1.7514 -0.1581 -2.1370 32 1 4.6021 0.9456 -0.9803 33 1 5.2402 -0.2027 -2.1814 34 1 3.7808 0.7485 -2.5472 35 1 6.8886 -0.6032 0.2989 36 1 2.2491 -1.6319 1.1524 37 1 3.8805 -1.2287 7.8328 38 1 3.4490 1.0949 8.4736 39 1 2.6044 2.7024 6.8168 40 1 2.1838 2.0201 4.5172 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:42 Heat of formation + Delta-G solvation = 44.671194 kcal Electronic energy + Delta-G solvation = -24852.716193 eV Core-core repulsion = 21373.801516 eV Total energy + Delta-G solvation = -3478.914677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31174 -38.76493 -36.77681 -36.16761 -33.97889 -31.38866 -31.08200 -30.53288 -29.94372 -26.18729 -25.75126 -25.56166 -23.09290 -22.53238 -21.55488 -20.13502 -19.68491 -18.52448 -17.30924 -16.57555 -16.30998 -15.39975 -15.19509 -15.10041 -14.86206 -14.57012 -13.97478 -13.84858 -13.58910 -13.44322 -12.99436 -12.83021 -12.27613 -12.16646 -12.11385 -11.85822 -11.69053 -11.38868 -11.26234 -10.95406 -10.80951 -10.69105 -10.59913 -10.39724 -10.23698 -10.04397 -9.80239 -9.73805 -9.37163 -9.02364 -8.53558 -8.33942 -7.74944 -6.75818 -5.71465 -3.17139 0.52134 1.13176 1.45433 1.82401 1.97279 3.38012 3.43241 3.43722 3.46322 3.68295 3.91703 4.45821 4.50179 4.75868 4.89891 5.18744 5.33190 5.36622 5.48015 5.49461 5.54891 5.67865 5.88505 5.93816 5.98968 6.05964 6.15942 6.17152 6.25504 6.37612 6.45546 6.49144 6.55364 6.75607 6.81403 6.88493 7.23636 7.40321 7.73716 7.81816 8.25223 8.39245 8.82264 9.23467 9.86952 10.36067 11.32903 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.005539 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.088357 B = 5053.468491 C = 6328.118561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.080 0.920 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.255 4.255 8 H 0.065 0.935 9 C 0.011 3.989 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.662 5.662 16 C 0.590 3.410 17 O -0.549 6.549 18 C 0.103 3.897 19 N -0.471 5.471 20 S 0.368 5.632 21 C -0.201 4.201 22 C -0.076 4.076 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.038 4.038 26 C -0.085 4.085 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.044 0.956 34 H -0.004 1.004 35 H 0.251 0.749 36 H 0.413 0.587 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 0.937 12.141 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.188 4.188 10 N -0.544 5.544 11 Si 0.723 3.277 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.206 1.206 15 N -0.311 5.311 16 C 0.370 3.630 17 O -0.427 6.427 18 C -0.085 4.085 19 N -0.296 5.296 20 S 0.526 5.474 21 C -0.322 4.322 22 C -0.098 4.098 23 C -0.117 4.117 24 C -0.145 4.145 25 C -0.060 4.060 26 C -0.096 4.096 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.250 0.750 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.543 -0.452 11.657 13.891 hybrid contribution 0.539 0.509 0.470 0.877 sum -7.004 0.056 12.127 14.004 Atomic orbital electron populations 1.22157 0.96608 1.01406 1.01683 1.21956 0.91992 0.98512 0.86744 0.90213 1.21202 0.86065 0.97949 0.93457 1.43903 0.98856 1.22667 1.66628 1.20795 0.92968 0.90430 0.93805 1.19003 0.97115 0.89387 1.32976 0.91681 1.24952 0.98658 0.96090 0.99137 1.70059 1.13362 1.21597 1.49415 0.86501 0.79254 0.83253 0.78668 1.21062 1.21724 1.20617 1.45619 1.62826 1.14884 1.07806 1.17006 0.78151 0.85763 0.82070 1.90687 1.52437 1.14849 1.84750 1.22069 1.02827 0.88266 0.95377 1.71539 1.16982 1.17066 1.24011 1.81354 1.61052 1.10993 0.93962 1.24332 1.06807 1.01657 0.99430 1.19883 1.00744 0.96585 0.92627 1.21004 0.98071 0.92883 0.99752 1.20866 1.00463 1.00162 0.93048 1.20848 0.95442 0.93425 0.96299 1.19665 1.03231 0.95902 0.90808 0.92028 0.92943 0.92856 0.93295 0.92744 0.95436 0.93692 0.98563 0.93827 0.74971 0.85122 0.85106 0.85144 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.32 16 4 C 0.14 2.79 5.36 -4.04 -0.02 2.77 16 5 N -0.60 -14.59 2.82 -181.11 -0.51 -15.10 16 6 C 0.16 4.07 9.01 59.85 0.54 4.61 16 7 C -0.26 -6.74 8.02 -15.06 -0.12 -6.86 16 8 H 0.07 1.68 7.84 -52.48 -0.41 1.27 16 9 C 0.01 0.30 5.13 -17.43 -0.09 0.21 16 10 N -0.90 -26.26 10.59 55.49 0.59 -25.67 16 11 Si 0.89 22.02 29.57 -169.99 -5.03 16.99 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 N -0.66 -13.80 4.48 -54.90 -0.25 -14.04 16 16 C 0.59 12.61 7.77 -12.54 -0.10 12.51 16 17 O -0.55 -12.23 14.67 5.27 0.08 -12.15 16 18 C 0.10 2.05 6.82 -81.99 -0.56 1.49 16 19 N -0.47 -9.18 10.49 28.25 0.30 -8.88 16 20 S 0.37 5.74 23.36 -107.50 -2.51 3.23 16 21 C -0.20 -3.04 6.73 -38.49 -0.26 -3.30 16 22 C -0.08 -0.89 10.03 -39.93 -0.40 -1.29 16 23 C -0.09 -0.98 10.00 -39.86 -0.40 -1.38 16 24 C -0.13 -1.47 9.93 -40.02 -0.40 -1.87 16 25 C -0.04 -0.58 9.57 -39.45 -0.38 -0.96 16 26 C -0.09 -1.49 6.10 -105.09 -0.64 -2.13 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 31 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 33 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 34 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.41 8.91 6.84 -40.82 -0.28 8.63 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.15 2.35 6.64 -52.48 -0.35 2.00 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -31.66 348.29 -9.85 -41.51 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.10 Total: 5.13 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.67 Total: 3.75 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.13 Total: -63.70 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -2.51 Total: 3.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.66 -9.85 -41.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.181 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds