Wall clock time and date at job start Tue Mar 31 2020 12:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30852 * 125.80960 * 2 1 4 4 N 1.40097 * 108.27946 * 180.25597 * 3 2 1 5 5 C 1.40184 * 126.09525 * 179.68002 * 4 3 2 6 6 C 1.38838 * 120.05959 * 144.77173 * 5 4 3 7 7 C 1.38126 * 119.93045 * 179.72147 * 6 5 4 8 8 C 1.38282 * 120.06580 * 0.54881 * 7 6 5 9 9 C 1.38289 * 120.13263 * 359.72711 * 8 7 6 10 10 C 1.38118 * 120.06439 * 359.97438 * 9 8 7 11 11 C 1.35799 * 107.80018 * 359.72108 * 4 3 2 12 12 Cl 1.73599 * 126.20174 * 180.02562 * 11 4 3 13 13 C 1.35465 * 107.59663 * 359.97438 * 11 4 3 14 14 C 1.50703 * 126.02845 * 180.02562 * 13 11 4 15 15 N 1.46899 * 109.47107 * 90.02481 * 14 13 11 16 16 C 1.46902 * 111.00255 * 293.95458 * 15 14 13 17 17 C 1.46901 * 111.00103 * 169.99758 * 15 14 13 18 18 C 1.50696 * 109.47399 * 190.00043 * 17 15 14 19 19 H 1.08005 * 119.99725 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00189 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99790 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47047 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47167 * 119.99895 * 22 20 18 25 25 H 1.48495 * 109.47058 * 239.99959 * 22 20 18 26 26 H 1.09002 * 109.47249 * 270.21383 * 1 2 3 27 27 H 1.08999 * 109.47074 * 30.21797 * 1 2 3 28 28 H 1.09007 * 109.47232 * 150.21729 * 1 2 3 29 29 H 1.08002 * 120.03925 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.96962 * 180.27387 * 7 6 5 31 31 H 1.07998 * 119.93321 * 179.74547 * 8 7 6 32 32 H 1.07995 * 119.96806 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.03401 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47152 * 330.02569 * 14 13 11 35 35 H 1.09001 * 109.46980 * 210.02669 * 14 13 11 36 36 H 1.09005 * 109.46528 * 59.99744 * 16 15 14 37 37 H 1.09000 * 109.46785 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.47044 * 300.00388 * 16 15 14 39 39 H 1.08998 * 109.47407 * 310.00536 * 17 15 14 40 40 H 1.09007 * 109.46608 * 69.99971 * 17 15 14 41 41 H 0.96994 * 119.99598 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0612 0.0000 4 7 3.6085 0.6392 -0.0059 5 6 4.7372 1.4706 -0.0142 6 6 5.8829 1.0946 0.6739 7 6 6.9954 1.9131 0.6593 8 6 6.9650 3.1112 -0.0305 9 6 5.8233 3.4911 -0.7120 10 6 4.7098 2.6739 -0.7061 11 6 3.6149 -0.7188 -0.0032 12 17 5.0206 -1.7375 -0.0077 13 6 2.3256 -1.1344 0.0048 14 6 1.8559 -2.5663 0.0108 15 7 1.7102 -3.0280 1.3977 16 6 3.0134 -3.0848 2.0734 17 6 1.0325 -4.3303 1.4507 18 6 0.6817 -4.6564 2.8795 19 1 0.9363 -3.9651 3.6693 20 6 0.0357 -5.8372 3.1785 21 7 -0.2747 -6.6787 2.2167 22 14 -0.3998 -6.2410 4.9496 23 1 0.0543 -5.1385 5.8347 24 1 -1.8709 -6.4018 5.0733 25 1 0.2714 -7.5040 5.3487 26 1 -0.3634 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3634 -0.8920 -0.5105 29 1 5.9057 0.1612 1.2167 30 1 7.8885 1.6191 1.1906 31 1 7.8347 3.7515 -0.0371 32 1 5.8025 4.4272 -1.2501 33 1 3.8185 2.9709 -1.2389 34 1 2.5858 -3.1903 -0.5050 35 1 0.8945 -2.6355 -0.4981 36 1 3.4622 -2.0915 2.0809 37 1 2.8764 -3.4292 3.0985 38 1 3.6683 -3.7754 1.5421 39 1 0.1219 -4.2906 0.8529 40 1 1.6942 -5.1005 1.0541 41 1 -0.7288 -7.5095 2.4272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:57 Heat of formation + Delta-G solvation = 90.319000 kcal Electronic energy + Delta-G solvation = -23976.565148 eV Core-core repulsion = 20497.586202 eV Total energy + Delta-G solvation = -3478.978946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79301 -40.07929 -38.31654 -38.01978 -35.26922 -34.57063 -32.26907 -31.87905 -31.48983 -29.15048 -28.54049 -27.91842 -25.60152 -23.80714 -23.48817 -22.28997 -21.82607 -20.57219 -19.19571 -18.43951 -17.30873 -17.17670 -16.67387 -16.53193 -16.00944 -15.73520 -15.55327 -15.24762 -15.05301 -14.61653 -14.37448 -14.12383 -14.05136 -13.77384 -13.68290 -13.30124 -13.24381 -13.07864 -13.01054 -12.75267 -12.59444 -12.50097 -12.34825 -12.19809 -12.10285 -11.82548 -11.61957 -11.26266 -10.90197 -10.58509 -10.06359 -10.01172 -9.24795 -8.95351 -8.16567 -6.25481 -0.28891 0.23012 0.28229 0.74484 1.38172 1.41758 1.42527 1.43813 1.56796 2.43455 2.65499 3.16110 3.27641 3.53748 3.80186 3.84231 3.87180 3.95535 4.17374 4.29516 4.37103 4.41545 4.48439 4.53922 4.64889 4.68797 4.79926 4.85260 4.91645 4.95494 4.96928 5.06547 5.23366 5.25953 5.31432 5.33442 5.44080 5.50454 5.63782 5.68900 5.99139 6.08346 6.33763 6.37037 6.63961 6.90250 7.43653 8.94367 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.003198 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.196944 B = 8753.907039 C = 9266.051978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.103 3.897 3 N -0.288 5.288 4 N -0.325 5.325 5 C 0.117 3.883 6 C -0.143 4.143 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.098 4.098 10 C -0.121 4.121 11 C 0.119 3.881 12 Cl 0.013 6.987 13 C -0.191 4.191 14 C 0.131 3.869 15 N -0.537 5.537 16 C 0.049 3.951 17 C 0.209 3.791 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.280 1.280 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.033 0.967 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.014 0.986 40 H -0.036 1.036 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 19.899 -7.155 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 N -0.110 5.110 4 N -0.103 5.103 5 C 0.026 3.974 6 C -0.163 4.163 7 C -0.116 4.116 8 C -0.130 4.130 9 C -0.116 4.116 10 C -0.141 4.141 11 C -0.032 4.032 12 Cl 0.041 6.959 13 C -0.203 4.203 14 C 0.002 3.998 15 N -0.262 5.262 16 C -0.099 4.099 17 C 0.083 3.917 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.206 1.206 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.145 0.855 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.032 0.968 40 H -0.018 1.018 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.858 21.283 -6.941 26.329 hybrid contribution 0.192 -2.400 0.369 2.435 sum 14.050 18.883 -6.572 24.437 Atomic orbital electron populations 1.20330 0.83735 1.04521 1.04197 1.22683 0.98586 0.88749 0.96289 1.77489 0.84711 1.21963 1.26814 1.45988 1.05114 1.01981 1.57267 1.17924 0.84540 0.93168 1.01735 1.21328 0.93229 1.02026 0.99765 1.21388 0.97540 0.93919 0.98716 1.21720 0.99159 0.96360 0.95747 1.21448 0.91575 0.99910 0.98705 1.21131 1.00658 0.93254 0.99093 1.21726 0.90758 0.83520 1.07173 1.98389 1.37388 1.63363 1.96712 1.19688 0.89635 0.97291 1.13679 1.20311 1.00500 0.88628 0.90331 1.62038 1.20538 1.29636 1.13944 1.22151 0.89516 0.99132 0.99114 1.19403 0.92221 0.83600 0.96483 1.21460 1.37126 1.03543 0.93595 0.92240 1.25827 0.95773 0.96062 1.01704 1.70078 1.42295 1.11042 1.33899 0.85400 0.77950 0.78020 0.79639 1.19045 1.20313 1.20571 0.89728 0.88908 0.89263 0.85913 0.82375 0.81759 0.82091 0.85471 0.94876 0.89425 0.92555 0.92653 0.96728 0.96835 1.01784 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 10.26 71.24 0.73 -1.06 16 2 C 0.10 3.31 7.21 43.11 0.31 3.62 16 3 N -0.29 -9.38 12.34 -47.36 -0.58 -9.97 16 4 N -0.32 -10.15 3.75 -178.44 -0.67 -10.82 16 5 C 0.12 3.05 6.37 38.09 0.24 3.29 16 6 C -0.14 -3.19 8.83 22.39 0.20 -2.99 16 7 C -0.10 -1.47 10.04 22.25 0.22 -1.24 16 8 C -0.11 -1.33 10.04 22.29 0.22 -1.10 16 9 C -0.10 -1.38 10.04 22.25 0.22 -1.16 16 10 C -0.12 -2.60 9.77 22.38 0.22 -2.39 16 11 C 0.12 3.83 6.20 83.44 0.52 4.35 16 12 Cl 0.01 0.37 24.34 -2.72 -0.07 0.31 16 13 C -0.19 -6.52 4.99 -20.10 -0.10 -6.62 16 14 C 0.13 4.90 5.09 85.56 0.44 5.33 16 15 N -0.54 -23.77 4.74 -931.63 -4.42 -28.19 16 16 C 0.05 2.03 8.23 127.69 1.05 3.08 16 17 C 0.21 11.07 4.72 85.56 0.40 11.48 16 18 C -0.52 -29.43 8.46 25.60 0.22 -29.21 16 19 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 20 C 0.00 0.25 5.46 84.66 0.46 0.71 16 21 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 22 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 2.20 7.24 -2.38 -0.02 2.18 16 29 H 0.12 2.90 6.20 -2.91 -0.02 2.88 16 30 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.03 1.24 7.89 -2.39 -0.02 1.22 16 35 H 0.09 3.14 7.03 -2.39 -0.02 3.12 16 36 H 0.06 2.12 5.71 -2.38 -0.01 2.10 16 37 H 0.05 2.44 6.76 -2.39 -0.02 2.42 16 38 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 39 H 0.01 0.76 7.93 -2.39 -0.02 0.74 16 40 H -0.04 -2.04 8.12 -2.38 -0.02 -2.06 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.39 353.87 2.97 -65.42 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.04 Total: 6.12 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.36 Total: -13.92 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -5.39 Total: -104.41 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.07 Total: 0.31 kcal Total: -68.39 2.97 -65.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.740 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds