Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 N 1.46496 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00143 * 266.04037 * 4 3 2 6 6 H 1.07998 * 120.00220 * 326.50690 * 5 4 3 7 7 C 1.38815 * 119.99913 * 146.50476 * 5 4 3 8 8 N 1.31615 * 120.00078 * 154.39323 * 7 5 4 9 9 Si 1.86797 * 119.99914 * 334.39773 * 7 5 4 10 10 H 1.48506 * 109.47448 * 95.40665 * 9 7 5 11 11 H 1.48502 * 109.47291 * 215.40588 * 9 7 5 12 12 H 1.48504 * 109.47438 * 335.40339 * 9 7 5 13 13 C 1.46504 * 119.99855 * 86.04666 * 4 3 2 14 14 C 1.50694 * 109.47311 * 84.78096 * 13 4 3 15 15 C 1.35085 * 126.07774 * 6.33968 * 14 13 4 16 16 N 1.35033 * 107.98008 * 180.14147 * 15 14 13 17 17 H 0.97010 * 125.92774 * 179.89653 * 16 15 14 18 18 N 1.40070 * 108.14266 * 359.62918 * 16 15 14 19 19 C 1.31627 * 108.10331 * 0.22912 * 18 16 15 20 20 C 1.48417 * 126.03348 * 179.97438 * 19 18 16 21 21 C 1.39327 * 120.10407 * 137.65950 * 20 19 18 22 22 C 1.38005 * 119.89174 * 179.76489 * 21 20 19 23 23 C 1.38433 * 120.10543 * 0.51545 * 22 21 20 24 24 Cl 1.73601 * 119.89095 * 179.76573 * 23 22 21 25 25 C 1.38436 * 120.21609 * 359.73452 * 23 22 21 26 26 C 1.38002 * 120.10305 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.47698 * 300.00061 * 1 2 3 28 28 H 1.09001 * 109.47104 * 60.00088 * 1 2 3 29 29 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47698 * 239.99939 * 2 1 3 31 31 H 1.09001 * 109.47104 * 119.99912 * 2 1 3 32 32 H 1.09007 * 109.46925 * 59.99407 * 3 2 1 33 33 H 1.09001 * 109.47032 * 299.99956 * 3 2 1 34 34 H 0.97005 * 120.00040 * 179.97438 * 8 7 5 35 35 H 1.09008 * 109.46965 * 324.78233 * 13 4 3 36 36 H 1.09002 * 109.47213 * 204.78502 * 13 4 3 37 37 H 1.08005 * 126.01115 * 359.97438 * 15 14 13 38 38 H 1.08003 * 120.05495 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.94369 * 180.22806 * 22 21 20 40 40 H 1.07990 * 119.94973 * 179.97438 * 25 23 22 41 41 H 1.08002 * 120.05353 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1891 1.5246 1.1839 6 1 3.7834 2.0988 2.0037 7 6 5.4043 0.8696 1.3299 8 7 6.2895 1.3106 2.1984 9 14 5.7833 -0.6376 0.2936 10 1 6.5595 -0.2315 -0.9056 11 1 6.5790 -1.6021 1.0949 12 1 4.5129 -1.2777 -0.1325 13 6 4.2380 1.3548 -1.2648 14 6 4.3775 2.7318 -1.8610 15 6 4.0147 3.8932 -1.2742 16 7 4.2983 4.8988 -2.1296 17 1 4.1413 5.8428 -1.9705 18 7 4.8643 4.3428 -3.2840 19 6 4.9141 3.0369 -3.1269 20 6 5.4421 2.0588 -4.1105 21 6 6.2408 1.0001 -3.6834 22 6 6.7254 0.0904 -4.6011 23 6 6.4278 0.2345 -5.9453 24 17 7.0453 -0.9097 -7.0956 25 6 5.6388 1.2877 -6.3752 26 6 5.1456 2.1997 -5.4645 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 7.1385 0.8527 2.3006 35 1 3.6927 0.7128 -1.9568 36 1 5.2276 0.9355 -1.0832 37 1 3.5728 3.9987 -0.2944 38 1 6.4776 0.8897 -2.6354 39 1 7.3415 -0.7327 -4.2704 40 1 5.4097 1.3963 -7.4249 41 1 4.5298 3.0209 -5.8007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130811044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = 109.863781 kcal Electronic energy + Delta-G solvation = -24462.521503 eV Core-core repulsion = 20984.390082 eV Total energy + Delta-G solvation = -3478.131421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84306 -38.97393 -36.51472 -36.46909 -33.09595 -32.51451 -31.58430 -31.06216 -29.55905 -29.28578 -26.10448 -25.40126 -23.40562 -22.81739 -22.16093 -20.53341 -19.87389 -19.37310 -17.55546 -17.03616 -16.57532 -15.47544 -15.39625 -15.14733 -14.53906 -14.21518 -14.02978 -13.84436 -13.50232 -13.46166 -13.13330 -12.78977 -12.60902 -12.54044 -12.36415 -11.68851 -11.62903 -11.57273 -11.48371 -11.14897 -10.91214 -10.83039 -10.74467 -10.59620 -10.38884 -10.09883 -9.86721 -9.59521 -9.44924 -9.04543 -8.56096 -8.35797 -7.77820 -6.96763 -6.03684 -3.39344 0.95054 1.31925 2.07621 2.35793 3.14115 3.20015 3.24148 3.46338 3.51099 3.78408 4.48924 4.68826 4.81171 4.87022 4.92405 5.26610 5.32042 5.36759 5.57738 5.60855 5.66659 5.68789 5.83302 5.95081 5.95187 6.12807 6.14610 6.20116 6.23025 6.28534 6.37753 6.42976 6.47698 6.52684 6.56525 6.76663 6.81614 6.88241 7.01246 7.04591 7.68640 7.95761 8.04568 8.31342 8.94811 9.68813 10.08545 11.11872 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.004620 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.935892 B = 6059.205538 C = 6581.130719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.150 3.850 4 N -0.603 5.603 5 C -0.268 4.268 6 H 0.081 0.919 7 C 0.038 3.962 8 N -0.895 5.895 9 Si 0.864 3.136 10 H -0.283 1.283 11 H -0.302 1.302 12 H -0.266 1.266 13 C 0.207 3.793 14 C -0.219 4.219 15 C 0.089 3.911 16 N -0.483 5.483 17 H 0.435 0.565 18 N -0.294 5.294 19 C 0.099 3.901 20 C 0.008 3.992 21 C -0.087 4.087 22 C -0.109 4.109 23 C -0.034 4.034 24 Cl -0.079 7.079 25 C -0.113 4.113 26 C -0.084 4.084 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.183 0.817 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 1.088 -13.703 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.024 3.976 4 N -0.324 5.324 5 C -0.396 4.396 6 H 0.099 0.901 7 C -0.163 4.163 8 N -0.536 5.536 9 Si 0.694 3.306 10 H -0.211 1.211 11 H -0.230 1.230 12 H -0.190 1.190 13 C 0.080 3.920 14 C -0.232 4.232 15 C -0.056 4.056 16 N -0.191 5.191 17 H 0.278 0.722 18 N -0.119 5.119 19 C -0.066 4.066 20 C 0.006 3.994 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.061 4.061 24 Cl -0.050 7.050 25 C -0.132 4.132 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.200 0.800 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.887 1.952 -14.419 15.061 hybrid contribution 0.215 -1.195 0.168 1.226 sum -3.671 0.757 -14.251 14.735 Atomic orbital electron populations 1.21724 0.97234 1.00528 1.00960 1.22146 0.93855 1.00901 1.01815 1.20943 0.84045 0.93580 0.98994 1.44145 1.00430 1.85997 1.01851 1.18763 1.02584 1.26401 0.91898 0.90130 1.25362 0.96612 0.97848 0.96485 1.69897 1.06513 1.39220 1.37991 0.87187 0.78265 0.85744 0.79391 1.21136 1.23021 1.19034 1.19548 0.96485 0.89261 0.86687 1.21236 1.09054 0.98915 0.93966 1.22376 0.99950 0.86944 0.96356 1.46164 1.50772 1.09080 1.13117 0.72156 1.77355 1.20109 1.08353 1.06064 1.20463 1.00670 0.90950 0.94514 1.17913 0.96748 0.93331 0.91433 1.21462 0.95489 0.92841 1.00842 1.20980 1.00870 1.00135 0.90748 1.20969 1.00901 0.93751 0.90448 1.98355 1.86501 1.60041 1.60089 1.20912 0.98051 0.93889 1.00364 1.21146 0.99198 0.98513 0.91511 0.93118 0.93514 0.93772 0.93252 0.91818 0.92894 0.94503 0.92756 0.93765 0.91612 0.80008 0.84024 0.84686 0.84864 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.65 16 2 C -0.15 -2.55 6.26 -26.73 -0.17 -2.72 16 3 C 0.15 2.75 5.69 -4.04 -0.02 2.72 16 4 N -0.60 -13.05 1.35 -174.60 -0.24 -13.29 16 5 C -0.27 -6.88 9.91 -15.06 -0.15 -7.03 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.04 1.02 5.24 -17.43 -0.09 0.93 16 8 N -0.90 -26.14 13.97 55.49 0.78 -25.36 16 9 Si 0.86 20.99 25.10 -169.99 -4.27 16.72 16 10 H -0.28 -6.46 5.48 56.52 0.31 -6.15 16 11 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.21 4.31 3.91 -5.19 -0.02 4.29 16 14 C -0.22 -4.20 6.05 -104.76 -0.63 -4.83 16 15 C 0.09 1.56 11.27 -17.26 -0.19 1.36 16 16 N -0.48 -7.35 7.35 30.42 0.22 -7.13 16 17 H 0.44 4.91 8.96 -182.61 -1.64 3.28 16 18 N -0.29 -5.09 12.74 33.43 0.43 -4.66 16 19 C 0.10 1.79 6.67 -82.78 -0.55 1.23 16 20 C 0.01 0.13 5.74 -104.89 -0.60 -0.47 16 21 C -0.09 -1.41 9.04 -39.26 -0.35 -1.77 16 22 C -0.11 -1.54 9.81 -39.59 -0.39 -1.92 16 23 C -0.03 -0.44 6.32 -39.44 -0.25 -0.69 16 24 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 25 C -0.11 -1.38 9.81 -39.60 -0.39 -1.77 16 26 C -0.08 -1.15 9.78 -39.26 -0.38 -1.53 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.95 8.01 -51.93 -0.42 0.54 16 33 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.04 0.88 8.11 -51.92 -0.42 0.46 16 36 H 0.07 1.50 2.04 -51.93 -0.11 1.39 16 37 H 0.18 3.13 7.79 -52.48 -0.41 2.73 16 38 H 0.14 2.57 5.36 -52.48 -0.28 2.29 16 39 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -29.26 354.17 -9.79 -39.05 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.72 Total: 5.58 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.83 Total: -13.84 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 1.19 Total: -50.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.27 Total: 16.72 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.26 -9.79 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130811044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.917 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds