Wall clock time and date at job start Tue Mar 31 2020 13:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 N 1.46496 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00143 * 266.04037 * 4 3 2 6 6 H 1.07998 * 120.00220 * 326.50690 * 5 4 3 7 7 C 1.38815 * 119.99913 * 146.50476 * 5 4 3 8 8 N 1.31615 * 120.00078 * 154.39323 * 7 5 4 9 9 Si 1.86797 * 119.99914 * 334.39773 * 7 5 4 10 10 H 1.48506 * 109.47448 * 95.40665 * 9 7 5 11 11 H 1.48502 * 109.47291 * 215.40588 * 9 7 5 12 12 H 1.48504 * 109.47438 * 335.40339 * 9 7 5 13 13 C 1.46504 * 119.99855 * 86.04666 * 4 3 2 14 14 C 1.50694 * 109.47311 * 84.78096 * 13 4 3 15 15 C 1.35085 * 126.07774 * 6.33968 * 14 13 4 16 16 N 1.35033 * 107.98008 * 180.14147 * 15 14 13 17 17 H 0.97010 * 125.92774 * 179.89653 * 16 15 14 18 18 N 1.40070 * 108.14266 * 359.62918 * 16 15 14 19 19 C 1.31627 * 108.10331 * 0.22912 * 18 16 15 20 20 C 1.48417 * 126.03348 * 179.97438 * 19 18 16 21 21 C 1.39327 * 120.10407 * 137.65950 * 20 19 18 22 22 C 1.38005 * 119.89174 * 179.76489 * 21 20 19 23 23 C 1.38433 * 120.10543 * 0.51545 * 22 21 20 24 24 Cl 1.73601 * 119.89095 * 179.76573 * 23 22 21 25 25 C 1.38436 * 120.21609 * 359.73452 * 23 22 21 26 26 C 1.38002 * 120.10305 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.47698 * 300.00061 * 1 2 3 28 28 H 1.09001 * 109.47104 * 60.00088 * 1 2 3 29 29 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47698 * 239.99939 * 2 1 3 31 31 H 1.09001 * 109.47104 * 119.99912 * 2 1 3 32 32 H 1.09007 * 109.46925 * 59.99407 * 3 2 1 33 33 H 1.09001 * 109.47032 * 299.99956 * 3 2 1 34 34 H 0.97005 * 120.00040 * 179.97438 * 8 7 5 35 35 H 1.09008 * 109.46965 * 324.78233 * 13 4 3 36 36 H 1.09002 * 109.47213 * 204.78502 * 13 4 3 37 37 H 1.08005 * 126.01115 * 359.97438 * 15 14 13 38 38 H 1.08003 * 120.05495 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.94369 * 180.22806 * 22 21 20 40 40 H 1.07990 * 119.94973 * 179.97438 * 25 23 22 41 41 H 1.08002 * 120.05353 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1891 1.5246 1.1839 6 1 3.7834 2.0988 2.0037 7 6 5.4043 0.8696 1.3299 8 7 6.2895 1.3106 2.1984 9 14 5.7833 -0.6376 0.2936 10 1 6.5595 -0.2315 -0.9056 11 1 6.5790 -1.6021 1.0949 12 1 4.5129 -1.2777 -0.1325 13 6 4.2380 1.3548 -1.2648 14 6 4.3775 2.7318 -1.8610 15 6 4.0147 3.8932 -1.2742 16 7 4.2983 4.8988 -2.1296 17 1 4.1413 5.8428 -1.9705 18 7 4.8643 4.3428 -3.2840 19 6 4.9141 3.0369 -3.1269 20 6 5.4421 2.0588 -4.1105 21 6 6.2408 1.0001 -3.6834 22 6 6.7254 0.0904 -4.6011 23 6 6.4278 0.2345 -5.9453 24 17 7.0453 -0.9097 -7.0956 25 6 5.6388 1.2877 -6.3752 26 6 5.1456 2.1997 -5.4645 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 7.1385 0.8527 2.3006 35 1 3.6927 0.7128 -1.9568 36 1 5.2276 0.9355 -1.0832 37 1 3.5728 3.9987 -0.2944 38 1 6.4776 0.8897 -2.6354 39 1 7.3415 -0.7327 -4.2704 40 1 5.4097 1.3963 -7.4249 41 1 4.5298 3.0209 -5.8007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130811044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:00 Heat of formation + Delta-G solvation = 94.994568 kcal Electronic energy + Delta-G solvation = -24463.166280 eV Core-core repulsion = 20984.390082 eV Total energy + Delta-G solvation = -3478.776198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18826 -40.06640 -38.15976 -37.47811 -34.61786 -33.89423 -33.27822 -32.19394 -31.06072 -30.48860 -27.59150 -27.15799 -24.58241 -24.07045 -23.59380 -21.92791 -21.30470 -20.77196 -19.08804 -18.36943 -18.07559 -17.19867 -16.53049 -16.37160 -16.11931 -15.69146 -15.40023 -15.07173 -14.72466 -14.64810 -14.53489 -14.38720 -14.15760 -13.98969 -13.92789 -13.14230 -12.85605 -12.71527 -12.64175 -12.50079 -12.42155 -12.30659 -12.18523 -12.10597 -11.83823 -11.64687 -11.50197 -11.31740 -10.70098 -10.57952 -10.11204 -9.56075 -9.17846 -8.81805 -8.14662 -5.44790 -0.17166 0.24980 1.01643 1.07720 1.29908 1.44262 1.53404 1.78566 1.98288 2.46367 2.63991 3.08025 3.38937 3.45891 3.77412 3.86402 4.10554 4.24943 4.27484 4.37875 4.38839 4.49576 4.58408 4.61264 4.70090 4.74765 4.78316 4.85349 4.94885 4.99470 5.06934 5.15755 5.19183 5.27443 5.32623 5.44560 5.46322 5.60566 5.61823 5.70524 5.99670 6.22705 6.44953 6.69345 7.04050 7.71040 8.12949 9.04646 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.004620 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.935892 B = 6059.205538 C = 6581.130719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.150 3.850 4 N -0.609 5.609 5 C -0.243 4.243 6 H 0.055 0.945 7 C -0.015 4.015 8 N -0.943 5.943 9 Si 0.913 3.087 10 H -0.267 1.267 11 H -0.316 1.316 12 H -0.260 1.260 13 C 0.213 3.787 14 C -0.247 4.247 15 C 0.093 3.907 16 N -0.465 5.465 17 H 0.453 0.547 18 N -0.300 5.300 19 C 0.097 3.903 20 C -0.013 4.013 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.033 4.033 24 Cl -0.062 7.062 25 C -0.101 4.101 26 C -0.079 4.079 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.183 0.817 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 1.093 -16.676 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.025 3.975 4 N -0.331 5.331 5 C -0.372 4.372 6 H 0.073 0.927 7 C -0.211 4.211 8 N -0.588 5.588 9 Si 0.743 3.257 10 H -0.194 1.194 11 H -0.246 1.246 12 H -0.184 1.184 13 C 0.087 3.913 14 C -0.260 4.260 15 C -0.054 4.054 16 N -0.176 5.176 17 H 0.300 0.700 18 N -0.125 5.125 19 C -0.068 4.068 20 C -0.015 4.015 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.060 4.060 24 Cl -0.033 7.033 25 C -0.119 4.119 26 C -0.098 4.098 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.200 0.800 38 H 0.133 0.867 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.293 1.980 -17.440 18.332 hybrid contribution 0.577 -1.128 1.031 1.633 sum -4.716 0.852 -16.408 17.094 Atomic orbital electron populations 1.21644 0.94074 1.01757 1.02112 1.22048 0.96627 0.99407 1.00226 1.21064 0.81832 0.94618 0.99977 1.44212 1.01847 1.86070 1.00987 1.18673 1.01983 1.24140 0.92429 0.92748 1.25829 0.97038 1.00156 0.98077 1.70007 1.07167 1.40721 1.40901 0.86348 0.78249 0.82530 0.78530 1.19388 1.24570 1.18442 1.19384 0.95241 0.90502 0.86182 1.21115 1.11151 0.98453 0.95241 1.22331 0.99485 0.87190 0.96346 1.46139 1.49600 1.09731 1.12120 0.70022 1.77316 1.20334 1.08118 1.06683 1.20673 1.00281 0.91376 0.94430 1.18001 0.97831 0.93341 0.92369 1.21270 0.96994 0.94119 0.99978 1.21067 1.00858 0.99960 0.91209 1.21067 1.00518 0.94148 0.90271 1.98366 1.86273 1.59467 1.59220 1.21231 0.96485 0.92583 1.01622 1.21292 0.98977 0.99097 0.90448 0.92405 0.91919 0.92561 0.93880 0.94377 0.92848 0.92453 0.93242 0.92976 0.93798 0.80035 0.86676 0.83788 0.81728 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.14 -4.79 6.26 30.59 0.19 -4.60 16 3 C 0.15 5.32 5.69 86.38 0.49 5.81 16 4 N -0.61 -26.38 1.35 -706.32 -0.96 -27.34 16 5 C -0.24 -12.74 9.91 84.03 0.83 -11.91 16 6 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 7 C -0.01 -0.82 5.24 84.86 0.44 -0.37 16 8 N -0.94 -57.22 13.97 21.65 0.30 -56.92 16 9 Si 0.91 44.61 25.10 68.60 1.72 46.33 16 10 H -0.27 -12.18 5.48 99.48 0.54 -11.64 16 11 H -0.32 -16.04 7.11 99.48 0.71 -15.33 16 12 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.21 8.84 3.91 85.63 0.33 9.18 16 14 C -0.25 -9.35 6.05 -19.95 -0.12 -9.47 16 15 C 0.09 3.19 11.27 83.47 0.94 4.13 16 16 N -0.47 -13.49 7.35 -57.67 -0.42 -13.92 16 17 H 0.45 9.39 8.96 -213.33 -1.91 7.47 16 18 N -0.30 -9.92 12.74 -48.16 -0.61 -10.53 16 19 C 0.10 3.42 6.67 42.53 0.28 3.70 16 20 C -0.01 -0.42 5.74 -20.04 -0.12 -0.53 16 21 C -0.10 -3.34 9.04 22.48 0.20 -3.14 16 22 C -0.11 -3.03 9.81 22.26 0.22 -2.81 16 23 C -0.03 -0.77 6.32 22.36 0.14 -0.63 16 24 Cl -0.06 -1.26 28.95 -2.72 -0.08 -1.34 16 25 C -0.10 -2.12 9.81 22.26 0.22 -1.90 16 26 C -0.08 -1.95 9.78 22.48 0.22 -1.73 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.88 8.01 -2.38 -0.02 1.86 16 33 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 35 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 36 H 0.04 2.03 2.04 -2.39 0.00 2.02 16 37 H 0.18 6.19 7.79 -2.91 -0.02 6.16 16 38 H 0.12 4.29 5.36 -2.91 -0.02 4.27 16 39 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.17 2.42 8.06 -2.92 -0.02 2.40 16 41 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -64.21 354.17 3.93 -60.28 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -1.02 Total: 20.43 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 5.00 Total: -16.99 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -1.69 Total: -108.71 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.72 Total: 46.33 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -64.21 3.93 -60.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130811044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.274 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds