Wall clock time and date at job start Tue Mar 31 2020 13:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 H 1.09001 * 109.47388 * 55.00597 * 3 2 1 5 5 N 1.46493 * 109.47381 * 294.99979 * 3 2 1 6 6 C 1.39989 * 120.00003 * 85.00204 * 5 3 2 7 7 C 1.40432 * 125.97226 * 0.02562 * 6 5 3 8 8 C 1.35251 * 107.86019 * 179.70499 * 7 6 5 9 9 N 1.34962 * 107.86128 * 0.42675 * 8 7 6 10 10 C 1.46500 * 125.97410 * 179.83595 * 9 8 7 11 11 C 1.50706 * 109.47299 * 124.71196 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 N 1.31219 * 125.97824 * 179.97438 * 6 5 3 20 20 C 1.50703 * 109.47227 * 175.00044 * 3 2 1 21 21 C 1.38244 * 119.98524 * 79.72408 * 20 3 2 22 22 C 1.38216 * 120.01078 * 179.72638 * 21 20 3 23 23 C 1.38354 * 119.98331 * 0.55353 * 22 21 20 24 24 Cl 1.73601 * 120.00834 * 179.70319 * 23 22 21 25 25 C 1.38348 * 119.98010 * 359.72184 * 23 22 21 26 26 C 1.38223 * 119.98171 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.46527 * 300.00059 * 1 2 3 28 28 H 1.08993 * 109.47032 * 59.99601 * 1 2 3 29 29 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46983 * 239.99666 * 2 1 3 31 31 H 1.09001 * 109.47323 * 120.00371 * 2 1 3 32 32 H 0.97001 * 120.00581 * 265.00242 * 5 3 2 33 33 H 1.07997 * 126.07138 * 0.02562 * 7 6 5 34 34 H 1.07992 * 126.07316 * 180.25997 * 8 7 6 35 35 H 1.09004 * 109.47078 * 4.71958 * 10 9 8 36 36 H 1.08993 * 109.47364 * 244.71729 * 10 9 8 37 37 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 38 38 H 1.07995 * 119.99503 * 0.02562 * 21 20 3 39 39 H 1.07992 * 120.00593 * 180.27401 * 22 21 20 40 40 H 1.07996 * 120.01137 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.98877 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.3882 2.6864 -1.3713 7 6 -0.6021 2.7231 -0.3763 8 6 -1.6699 3.3844 -0.8781 9 7 -1.3754 3.7457 -2.1446 10 6 -2.2557 4.4799 -3.0569 11 6 -1.5482 5.7149 -3.5524 12 1 -0.5433 5.9310 -3.2211 13 6 -2.1839 6.5689 -4.4284 14 7 -3.4057 6.3029 -4.8360 15 14 -1.3067 8.0993 -5.0431 16 1 -2.1968 8.8405 -5.9724 17 1 -0.9612 8.9687 -3.8897 18 1 -0.0648 7.7055 -5.7556 19 7 -0.0785 3.3014 -2.4323 20 6 3.5420 1.4443 0.1238 21 6 4.3271 1.1973 -0.9869 22 6 5.7047 1.2045 -0.8751 23 6 6.2977 1.4474 0.3510 24 17 8.0278 1.4489 0.4937 25 6 5.5114 1.6888 1.4635 26 6 4.1339 1.6866 1.3493 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.2720 2.1232 -1.9978 33 1 -0.5230 2.3029 0.6154 34 1 -2.5951 3.5852 -0.3585 35 1 -3.1652 4.7689 -2.5302 36 1 -2.5129 3.8440 -3.9040 37 1 -3.8611 5.5081 -4.5171 38 1 3.8640 1.0036 -1.9431 39 1 6.3180 1.0159 -1.7438 40 1 5.9737 1.8781 2.4209 41 1 3.5200 1.8755 2.2176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152771437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:31 Heat of formation + Delta-G solvation = 92.866594 kcal Electronic energy + Delta-G solvation = -23413.365300 eV Core-core repulsion = 19934.496825 eV Total energy + Delta-G solvation = -3478.868474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51866 -39.80470 -37.24520 -36.30245 -33.92220 -32.38511 -31.43606 -31.31736 -30.08600 -29.11202 -26.56574 -25.38872 -23.35638 -22.77458 -22.42506 -21.34381 -20.09308 -19.27419 -17.60520 -17.18293 -16.62884 -15.98680 -15.61386 -15.13645 -14.80737 -14.61039 -14.06035 -13.90183 -13.79376 -13.77223 -13.44661 -13.16951 -12.82274 -12.57967 -12.31108 -12.17382 -11.87911 -11.76488 -11.63303 -11.29351 -11.15160 -11.10104 -11.02100 -10.84553 -10.69770 -10.14599 -9.92576 -9.64054 -9.35346 -8.90501 -8.83141 -8.54400 -7.96843 -7.05588 -6.53678 -4.27773 0.79901 0.97857 1.83010 2.82887 3.10145 3.34864 3.39594 3.41923 3.60614 3.68485 4.10652 4.36694 4.44016 4.46772 4.56690 4.96267 4.98863 5.08451 5.12250 5.19410 5.29454 5.40651 5.46536 5.54281 5.63519 5.75700 5.83597 5.89917 5.91566 5.97533 6.07305 6.15867 6.32611 6.44742 6.46307 6.50093 6.56759 6.75820 7.00523 7.57953 7.73794 7.92817 8.12325 8.40643 8.63233 8.82271 9.40369 10.82999 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002749 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.860497 B =10184.921758 C =11659.425565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.212 3.788 4 H 0.087 0.913 5 N -0.721 5.721 6 C 0.310 3.690 7 C -0.328 4.328 8 C 0.062 3.938 9 N -0.326 5.326 10 C 0.252 3.748 11 C -0.604 4.604 12 H 0.063 0.937 13 C 0.022 3.978 14 N -0.907 5.907 15 Si 1.076 2.924 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.285 1.285 19 N -0.330 5.330 20 C -0.078 4.078 21 C -0.097 4.097 22 C -0.107 4.107 23 C -0.037 4.037 24 Cl -0.075 7.075 25 C -0.108 4.108 26 C -0.097 4.097 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.323 -13.426 14.107 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.105 3.895 4 H 0.105 0.895 5 N -0.364 5.364 6 C 0.054 3.946 7 C -0.361 4.361 8 C -0.089 4.089 9 N -0.106 5.106 10 C 0.133 3.867 11 C -0.643 4.643 12 H 0.081 0.919 13 C -0.183 4.183 14 N -0.542 5.542 15 Si 0.903 3.097 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.212 1.212 19 N -0.162 5.162 20 C -0.079 4.079 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.064 4.064 24 Cl -0.046 7.046 25 C -0.127 4.127 26 C -0.115 4.115 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.233 0.767 33 H 0.153 0.847 34 H 0.178 0.822 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.351 -11.679 11.989 22.711 hybrid contribution 0.386 -1.598 1.616 2.305 sum 15.736 -13.277 13.606 24.678 Atomic orbital electron populations 1.22043 0.94748 1.01005 1.03283 1.22047 0.97208 0.95852 1.01983 1.19587 0.88529 0.93290 0.88095 0.89524 1.43441 1.13191 1.64560 1.15203 1.19116 0.87168 0.95286 0.93021 1.20882 0.95498 1.18007 1.01693 1.22337 1.00129 0.98949 0.87476 1.48685 1.10431 1.41197 1.10240 1.19654 0.87643 0.91512 0.87871 1.22111 1.03481 1.07329 1.31335 0.91895 1.25907 0.96002 1.02526 0.93835 1.70851 1.12104 1.28076 1.43215 0.83431 0.75132 0.74668 0.76460 1.20572 1.21279 1.21160 1.77460 0.94991 1.22347 1.21395 1.20145 0.95699 0.98351 0.93689 1.20961 0.92616 0.99044 0.98968 1.21054 0.95033 1.00157 0.96285 1.20951 0.84484 1.05301 0.95672 1.98372 1.10924 1.97057 1.98286 1.21029 0.93420 1.00396 0.97858 1.20984 0.93889 0.99183 0.97477 0.92528 0.90821 0.93602 0.91755 0.91643 0.76722 0.84722 0.82166 0.94021 0.95081 0.92336 0.84922 0.84840 0.84852 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.30 37.16 0.31 -1.41 16 2 C -0.13 -1.30 5.59 -26.73 -0.15 -1.45 16 3 C 0.21 2.30 2.44 -69.09 -0.17 2.14 16 4 H 0.09 0.95 7.00 -51.93 -0.36 0.59 16 5 N -0.72 -10.34 5.17 -54.70 -0.28 -10.62 16 6 C 0.31 5.73 6.86 -154.55 -1.06 4.67 16 7 C -0.33 -5.53 7.59 -39.82 -0.30 -5.83 16 8 C 0.06 1.17 11.44 -17.24 -0.20 0.97 16 9 N -0.33 -7.50 3.67 -62.56 -0.23 -7.73 16 10 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 11 C -0.60 -17.19 9.24 -34.44 -0.32 -17.51 16 12 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 14 N -0.91 -26.63 13.65 55.43 0.76 -25.88 16 15 Si 1.08 25.25 29.90 -169.99 -5.08 20.17 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 N -0.33 -7.59 12.42 31.41 0.39 -7.20 16 20 C -0.08 -0.76 4.95 -104.62 -0.52 -1.28 16 21 C -0.10 -0.93 9.05 -39.59 -0.36 -1.29 16 22 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 23 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.17 16 25 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 26 C -0.10 -0.84 9.67 -39.59 -0.38 -1.22 16 27 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 28 H 0.07 1.05 5.38 -51.93 -0.28 0.77 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.40 5.54 7.01 -40.82 -0.29 5.25 16 33 H 0.14 1.86 5.50 -52.49 -0.29 1.57 16 34 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.04 1.02 7.94 -51.93 -0.41 0.61 16 36 H 0.03 0.83 8.00 -51.93 -0.42 0.42 16 37 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 38 H 0.13 1.17 6.93 -52.49 -0.36 0.81 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.91 8.04 -52.49 -0.42 0.48 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.74 353.20 -10.14 -41.87 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.21 Total: 4.85 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -4.30 Total: -18.62 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.63 Total: -51.42 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.74 -10.14 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152771437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.738 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds