Wall clock time and date at job start Tue Mar 31 2020 13:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 H 1.09001 * 109.47388 * 55.00597 * 3 2 1 5 5 N 1.46493 * 109.47381 * 294.99979 * 3 2 1 6 6 C 1.39989 * 120.00003 * 85.00204 * 5 3 2 7 7 C 1.40432 * 125.97226 * 0.02562 * 6 5 3 8 8 C 1.35251 * 107.86019 * 179.70499 * 7 6 5 9 9 N 1.34962 * 107.86128 * 0.42675 * 8 7 6 10 10 C 1.46500 * 125.97410 * 179.83595 * 9 8 7 11 11 C 1.50706 * 109.47299 * 124.71196 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 N 1.31219 * 125.97824 * 179.97438 * 6 5 3 20 20 C 1.50703 * 109.47227 * 175.00044 * 3 2 1 21 21 C 1.38244 * 119.98524 * 79.72408 * 20 3 2 22 22 C 1.38216 * 120.01078 * 179.72638 * 21 20 3 23 23 C 1.38354 * 119.98331 * 0.55353 * 22 21 20 24 24 Cl 1.73601 * 120.00834 * 179.70319 * 23 22 21 25 25 C 1.38348 * 119.98010 * 359.72184 * 23 22 21 26 26 C 1.38223 * 119.98171 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.46527 * 300.00059 * 1 2 3 28 28 H 1.08993 * 109.47032 * 59.99601 * 1 2 3 29 29 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46983 * 239.99666 * 2 1 3 31 31 H 1.09001 * 109.47323 * 120.00371 * 2 1 3 32 32 H 0.97001 * 120.00581 * 265.00242 * 5 3 2 33 33 H 1.07997 * 126.07138 * 0.02562 * 7 6 5 34 34 H 1.07992 * 126.07316 * 180.25997 * 8 7 6 35 35 H 1.09004 * 109.47078 * 4.71958 * 10 9 8 36 36 H 1.08993 * 109.47364 * 244.71729 * 10 9 8 37 37 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 38 38 H 1.07995 * 119.99503 * 0.02562 * 21 20 3 39 39 H 1.07992 * 120.00593 * 180.27401 * 22 21 20 40 40 H 1.07996 * 120.01137 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.98877 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.3882 2.6864 -1.3713 7 6 -0.6021 2.7231 -0.3763 8 6 -1.6699 3.3844 -0.8781 9 7 -1.3754 3.7457 -2.1446 10 6 -2.2557 4.4799 -3.0569 11 6 -1.5482 5.7149 -3.5524 12 1 -0.5433 5.9310 -3.2211 13 6 -2.1839 6.5689 -4.4284 14 7 -3.4057 6.3029 -4.8360 15 14 -1.3067 8.0993 -5.0431 16 1 -2.1968 8.8405 -5.9724 17 1 -0.9612 8.9687 -3.8897 18 1 -0.0648 7.7055 -5.7556 19 7 -0.0785 3.3014 -2.4323 20 6 3.5420 1.4443 0.1238 21 6 4.3271 1.1973 -0.9869 22 6 5.7047 1.2045 -0.8751 23 6 6.2977 1.4474 0.3510 24 17 8.0278 1.4489 0.4937 25 6 5.5114 1.6888 1.4635 26 6 4.1339 1.6866 1.3493 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.2720 2.1232 -1.9978 33 1 -0.5230 2.3029 0.6154 34 1 -2.5951 3.5852 -0.3585 35 1 -3.1652 4.7689 -2.5302 36 1 -2.5129 3.8440 -3.9040 37 1 -3.8611 5.5081 -4.5171 38 1 3.8640 1.0036 -1.9431 39 1 6.3180 1.0159 -1.7438 40 1 5.9737 1.8781 2.4209 41 1 3.5200 1.8755 2.2176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152771437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:30 Heat of formation + Delta-G solvation = 75.940364 kcal Electronic energy + Delta-G solvation = -23414.099276 eV Core-core repulsion = 19934.496825 eV Total energy + Delta-G solvation = -3479.602451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92315 -40.63518 -38.12360 -37.15400 -35.88078 -33.74933 -32.42919 -32.05129 -31.40197 -30.56808 -28.14782 -26.60282 -24.89862 -23.87342 -23.23159 -22.45707 -21.50837 -20.49811 -19.19416 -18.41077 -17.97610 -16.90777 -16.68761 -16.18416 -16.08111 -15.74433 -15.61740 -15.10819 -15.05419 -14.67306 -14.45323 -14.38733 -13.94038 -13.79712 -13.59548 -13.50148 -13.30456 -13.16071 -12.61488 -12.51530 -12.42231 -12.16752 -11.96629 -11.94361 -11.81013 -11.70871 -11.44363 -11.10857 -10.77547 -10.66483 -10.02695 -9.61136 -9.47154 -8.83933 -8.41282 -6.53508 0.07946 0.30470 1.13983 1.31706 1.49879 1.56562 1.70904 1.78900 2.27802 2.47892 2.57763 2.81724 3.02271 3.55861 3.78061 3.92966 4.00389 4.17149 4.20105 4.27836 4.37139 4.40576 4.54320 4.64073 4.70174 4.72119 4.79958 4.90471 4.96697 4.99972 5.01378 5.15509 5.20052 5.23660 5.32735 5.47418 5.55324 5.57502 5.69367 5.78728 5.95460 6.32289 6.40928 6.54162 6.77273 7.21810 7.36773 8.59423 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002749 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.860497 B =10184.921758 C =11659.425565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.212 3.788 4 H 0.094 0.906 5 N -0.714 5.714 6 C 0.320 3.680 7 C -0.310 4.310 8 C 0.054 3.946 9 N -0.359 5.359 10 C 0.264 3.736 11 C -0.617 4.617 12 H 0.042 0.958 13 C -0.021 4.021 14 N -0.925 5.925 15 Si 1.119 2.881 16 H -0.274 1.274 17 H -0.270 1.270 18 H -0.278 1.278 19 N -0.394 5.394 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.047 4.047 24 Cl -0.075 7.075 25 C -0.110 4.110 26 C -0.094 4.094 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.172 0.828 34 H 0.191 0.809 35 H 0.048 0.952 36 H 0.007 0.993 37 H 0.260 0.740 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.520 -13.834 16.445 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.107 3.893 4 H 0.112 0.888 5 N -0.357 5.357 6 C 0.063 3.937 7 C -0.342 4.342 8 C -0.094 4.094 9 N -0.139 5.139 10 C 0.144 3.856 11 C -0.655 4.655 12 H 0.060 0.940 13 C -0.221 4.221 14 N -0.561 5.561 15 Si 0.940 3.060 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.204 1.204 19 N -0.227 5.227 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.073 4.073 24 Cl -0.046 7.046 25 C -0.129 4.129 26 C -0.113 4.113 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.189 0.811 34 H 0.208 0.792 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.566 -12.133 14.380 25.069 hybrid contribution 0.126 -1.623 0.994 1.907 sum 16.692 -13.756 15.374 26.537 Atomic orbital electron populations 1.21987 0.95570 1.01314 1.01988 1.21995 0.96279 0.95216 1.02935 1.19773 0.89469 0.93569 0.86465 0.88838 1.43749 1.11624 1.63725 1.16592 1.19472 0.88455 0.93531 0.92279 1.21242 0.94018 1.16392 1.02538 1.23026 1.01889 0.98334 0.86134 1.48358 1.10751 1.43435 1.11399 1.19214 0.88168 0.90308 0.87912 1.22299 1.02754 1.08751 1.31713 0.93981 1.27271 0.96013 1.05105 0.93674 1.70946 1.12877 1.28231 1.44074 0.82892 0.74457 0.71904 0.76742 1.19884 1.19517 1.20372 1.77337 0.95820 1.25329 1.24173 1.20088 0.94870 0.99437 0.94371 1.21039 0.92913 0.99358 0.99160 1.21189 0.95060 1.00234 0.96816 1.21133 0.84712 1.05430 0.96060 1.98372 1.10872 1.97052 1.98278 1.21284 0.93467 0.99709 0.98399 1.21233 0.94164 0.98197 0.97697 0.91370 0.94258 0.92688 0.92330 0.89138 0.76776 0.81114 0.79159 0.93419 0.97561 0.93079 0.84928 0.84013 0.83032 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.30 71.98 0.60 -2.42 16 2 C -0.13 -2.15 5.59 30.59 0.17 -1.98 16 3 C 0.21 4.11 2.44 44.25 0.11 4.22 16 4 H 0.09 1.72 7.00 -2.39 -0.02 1.70 16 5 N -0.71 -19.80 5.17 -326.98 -1.69 -21.49 16 6 C 0.32 11.66 6.86 133.39 0.92 12.58 16 7 C -0.31 -9.88 7.59 22.12 0.17 -9.71 16 8 C 0.05 1.99 11.44 83.52 0.96 2.95 16 9 N -0.36 -16.86 3.67 -351.84 -1.29 -18.15 16 10 C 0.26 13.95 5.57 85.64 0.48 14.42 16 11 C -0.62 -36.11 9.24 25.60 0.24 -35.87 16 12 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 13 C -0.02 -1.23 5.46 84.65 0.46 -0.76 16 14 N -0.92 -55.22 13.65 21.45 0.29 -54.93 16 15 Si 1.12 50.96 29.90 68.60 2.05 53.02 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 N -0.39 -18.55 12.42 -54.54 -0.68 -19.23 16 20 C -0.09 -1.51 4.95 -19.86 -0.10 -1.60 16 21 C -0.11 -1.90 9.05 22.27 0.20 -1.70 16 22 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 23 C -0.05 -0.79 6.32 22.32 0.14 -0.65 16 24 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.30 16 25 C -0.11 -1.60 9.83 22.29 0.22 -1.38 16 26 C -0.09 -1.35 9.67 22.27 0.22 -1.14 16 27 H 0.07 1.17 6.54 -2.39 -0.02 1.16 16 28 H 0.04 1.06 5.38 -2.39 -0.01 1.05 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.40 11.00 7.01 -92.71 -0.65 10.35 16 33 H 0.17 4.09 5.50 -2.91 -0.02 4.07 16 34 H 0.19 5.50 8.06 -2.91 -0.02 5.47 16 35 H 0.05 2.42 7.94 -2.39 -0.02 2.40 16 36 H 0.01 0.37 8.00 -2.39 -0.02 0.35 16 37 H 0.26 15.36 7.22 -92.71 -0.67 14.69 16 38 H 0.13 2.29 6.93 -2.91 -0.02 2.27 16 39 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.16 1.48 8.04 -2.91 -0.02 1.45 16 Total: -1.00 -70.35 353.20 4.10 -66.24 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.51 Total: 20.64 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.99 Total: -24.79 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.36 Total: -113.80 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.02 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -70.35 4.10 -66.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152771437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.184 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds