Wall clock time and date at job start Tue Mar 31 2020 13:09:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53007 * 109.47191 * 2 1
4 4 H 1.08996 * 109.47038 * 174.11751 * 3 2 1
5 5 C 1.50701 * 109.47015 * 54.11809 * 3 2 1
6 6 H 1.08000 * 119.99931 * 239.99825 * 5 3 2
7 7 C 1.37871 * 120.00208 * 60.00353 * 5 3 2
8 8 N 1.31515 * 120.00041 * 359.97438 * 7 5 3
9 9 Si 1.86799 * 120.00071 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.47171 * 89.99772 * 9 7 5
11 11 H 1.48507 * 109.47340 * 209.99895 * 9 7 5
12 12 H 1.48499 * 109.47377 * 329.99929 * 9 7 5
13 13 N 1.46900 * 109.46966 * 294.11806 * 3 2 1
14 14 C 1.46895 * 110.99890 * 276.07934 * 13 3 2
15 15 C 1.50703 * 109.47130 * 175.71865 * 14 13 3
16 16 C 1.35084 * 126.07527 * 259.68846 * 15 14 13
17 17 N 1.35039 * 107.98059 * 179.83753 * 16 15 14
18 18 H 0.97001 * 125.93252 * 180.16561 * 17 16 15
19 19 N 1.40071 * 108.13595 * 0.42458 * 17 16 15
20 20 C 1.31618 * 108.10774 * 359.73852 * 19 17 16
21 21 C 1.48431 * 126.03542 * 179.97438 * 20 19 17
22 22 C 1.39347 * 120.11308 * 325.02296 * 21 20 19
23 23 C 1.38002 * 119.90633 * 179.97438 * 22 21 20
24 24 C 1.38319 * 120.13243 * 359.97438 * 23 22 21
25 25 C 1.38416 * 120.23095 * 0.02562 * 24 23 22
26 26 Cl 1.73595 * 119.95769 * 179.97438 * 25 24 23
27 27 C 1.38161 * 120.08747 * 359.74987 * 25 24 23
28 28 H 1.09000 * 109.46630 * 58.50357 * 1 2 3
29 29 H 1.09001 * 109.47178 * 298.50624 * 1 2 3
30 30 H 1.08999 * 109.47268 * 178.50388 * 1 2 3
31 31 H 1.09004 * 109.47164 * 119.99344 * 2 1 3
32 32 H 1.08992 * 109.47765 * 239.99337 * 2 1 3
33 33 H 0.96996 * 119.99833 * 180.02562 * 8 7 5
34 34 H 1.00899 * 110.99864 * 40.02907 * 13 3 2
35 35 H 1.09002 * 109.47243 * 295.71637 * 14 13 3
36 36 H 1.09001 * 109.47481 * 55.71606 * 14 13 3
37 37 H 1.08004 * 126.01267 * 359.97438 * 16 15 14
38 38 H 1.08002 * 120.05160 * 359.95769 * 22 21 20
39 39 H 1.07998 * 119.93731 * 179.97438 * 23 22 21
40 40 H 1.08004 * 119.88702 * 180.02562 * 24 23 22
41 41 H 1.08008 * 120.06759 * 180.25275 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1249 1.4443 0.1053
5 6 1.4223 2.1937 1.1512
6 1 0.8154 3.0669 0.9626
7 6 1.6321 1.7664 2.4451
8 7 2.3709 0.7028 2.6747
9 14 0.8670 2.6979 3.8721
10 1 -0.4752 2.1355 4.1676
11 1 1.7338 2.5663 5.0708
12 1 0.7342 4.1326 3.5124
13 7 1.6697 2.0928 -1.2641
14 6 2.6461 1.7884 -2.3185
15 6 2.1796 2.3833 -3.6221
16 6 1.5654 1.7187 -4.6251
17 7 1.3061 2.6021 -5.6131
18 1 0.8683 2.4019 -6.4552
19 7 1.7844 3.8564 -5.2131
20 6 2.3117 3.7297 -4.0139
21 6 2.9360 4.8142 -3.2155
22 6 3.6560 5.8241 -3.8506
23 6 4.2342 6.8306 -3.1042
24 6 4.0999 6.8389 -1.7276
25 6 3.3860 5.8384 -1.0909
26 17 3.2226 5.8554 0.6372
27 6 2.7994 4.8288 -1.8295
28 1 -0.3632 0.5369 -0.8763
29 1 -0.3633 0.4905 0.9031
30 1 -0.3634 -1.0273 -0.0268
31 1 1.8934 -0.5137 0.8901
32 1 1.8934 -0.5139 -0.8898
33 1 2.5181 0.4020 3.5850
34 1 0.7379 1.8288 -1.5471
35 1 3.6138 2.2130 -2.0511
36 1 2.7406 0.7078 -2.4254
37 1 1.3224 0.6664 -4.6343
38 1 3.7616 5.8192 -4.9254
39 1 4.7926 7.6134 -3.5959
40 1 4.5537 7.6288 -1.1473
41 1 2.2389 4.0506 -1.3327
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000184085693.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:43
Heat of formation + Delta-G solvation = 90.207585 kcal
Electronic energy + Delta-G solvation = -24617.208095 eV
Core-core repulsion = 21138.224318 eV
Total energy + Delta-G solvation = -3478.983777 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.115 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.13392 -38.72492 -36.58225 -35.89541 -33.26181 -32.37368 -31.11863 -30.36048
-29.46706 -29.29406 -26.37181 -24.03521 -23.44465 -23.12759 -22.33645 -20.45565
-19.54497 -19.23914 -17.76320 -16.61174 -15.98775 -15.30791 -15.15761 -14.78105
-14.50027 -14.48507 -13.84028 -13.68452 -13.41486 -13.11837 -12.84444 -12.75482
-12.64698 -12.32259 -11.83005 -11.52711 -11.30622 -11.17568 -11.11030 -10.89265
-10.67362 -10.50849 -10.47373 -10.25524 -9.93277 -9.81003 -9.75536 -9.53020
-8.93886 -8.56375 -8.41292 -8.28747 -8.15380 -7.20716 -5.92020 -3.92073
1.15230 1.56365 2.05000 2.62332 2.92648 2.94297 3.35897 3.43494
3.48876 3.99646 4.50378 4.58686 4.90045 5.08882 5.24806 5.39399
5.41210 5.46392 5.49065 5.57568 5.79277 5.90108 5.92277 6.23022
6.27602 6.35296 6.36386 6.45155 6.46281 6.59950 6.63454 6.74665
6.84297 6.90813 7.20170 7.30210 7.31062 7.34325 7.52620 7.72432
7.73559 7.94675 8.32009 8.55126 8.64571 9.13105 9.71414 11.15286
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.010792 B = 0.005847 C = 0.004004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2593.869549 B = 4787.381605 C = 6991.954618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.145 4.145
3 C 0.215 3.785
4 H 0.035 0.965
5 C -0.480 4.480
6 H 0.062 0.938
7 C 0.061 3.939
8 N -0.896 5.896
9 Si 0.883 3.117
10 H -0.284 1.284
11 H -0.290 1.290
12 H -0.273 1.273
13 N -0.678 5.678
14 C 0.127 3.873
15 C -0.205 4.205
16 C 0.055 3.945
17 N -0.479 5.479
18 H 0.437 0.563
19 N -0.291 5.291
20 C 0.135 3.865
21 C -0.011 4.011
22 C -0.096 4.096
23 C -0.124 4.124
24 C -0.110 4.110
25 C -0.038 4.038
26 Cl -0.055 7.055
27 C -0.083 4.083
28 H 0.029 0.971
29 H 0.066 0.934
30 H 0.020 0.980
31 H 0.092 0.908
32 H 0.010 0.990
33 H 0.257 0.743
34 H 0.329 0.671
35 H 0.073 0.927
36 H 0.030 0.970
37 H 0.175 0.825
38 H 0.124 0.876
39 H 0.127 0.873
40 H 0.127 0.873
41 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.404 5.090 -13.856 14.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.184 4.184
3 C 0.108 3.892
4 H 0.053 0.947
5 C -0.519 4.519
6 H 0.080 0.920
7 C -0.139 4.139
8 N -0.536 5.536
9 Si 0.712 3.288
10 H -0.210 1.210
11 H -0.216 1.216
12 H -0.197 1.197
13 N -0.309 5.309
14 C -0.003 4.003
15 C -0.216 4.216
16 C -0.092 4.092
17 N -0.188 5.188
18 H 0.281 0.719
19 N -0.114 5.114
20 C -0.030 4.030
21 C -0.014 4.014
22 C -0.116 4.116
23 C -0.143 4.143
24 C -0.130 4.130
25 C -0.065 4.065
26 Cl -0.026 7.026
27 C -0.102 4.102
28 H 0.048 0.952
29 H 0.085 0.915
30 H 0.039 0.961
31 H 0.110 0.890
32 H 0.029 0.971
33 H 0.067 0.933
34 H 0.148 0.852
35 H 0.091 0.909
36 H 0.048 0.952
37 H 0.192 0.808
38 H 0.142 0.858
39 H 0.145 0.855
40 H 0.145 0.855
41 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges 1.485 6.345 -14.332 15.744
hybrid contribution -0.699 -1.278 0.910 1.717
sum 0.786 5.067 -13.423 14.369
Atomic orbital electron populations
1.21560 0.97765 0.97832 1.01264 1.22098 0.94903 1.01261 1.00170
1.19227 0.96247 0.88571 0.85158 0.94698 1.20992 1.30127 1.11282
0.89502 0.91971 1.24822 0.95540 0.95070 0.98506 1.69871 1.39378
1.24207 1.20177 0.86716 0.78981 0.80741 0.82378 1.21008 1.21561
1.19730 1.60759 1.04288 1.62400 1.03466 1.20237 0.96922 0.96387
0.86748 1.20294 1.09541 0.92811 0.98951 1.22324 1.00545 0.96772
0.89583 1.46100 1.49161 1.06178 1.17318 0.71909 1.77487 1.18761
1.00960 1.14210 1.20492 0.97717 0.93140 0.91639 1.17679 0.98782
0.93167 0.91747 1.21224 0.96900 0.93565 0.99901 1.20875 1.01157
0.99093 0.93127 1.21144 0.98954 0.98080 0.94794 1.20920 1.01743
0.97724 0.86079 1.98415 1.96618 1.98241 1.09321 1.22507 0.96881
0.98349 0.92502 0.95223 0.91522 0.96121 0.88983 0.97132 0.93266
0.85247 0.90916 0.95222 0.80808 0.85816 0.85514 0.85469 0.78857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.56 9.39 37.16 0.35 -2.21 16
2 C -0.14 -3.17 5.50 -26.73 -0.15 -3.32 16
3 C 0.22 4.91 2.33 -68.86 -0.16 4.75 16
4 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16
5 C -0.48 -12.20 7.35 -34.44 -0.25 -12.45 16
6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
7 C 0.06 1.61 5.23 -17.82 -0.09 1.52 16
8 N -0.90 -24.59 11.39 55.43 0.63 -23.95 16
9 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16
10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
13 N -0.68 -13.00 3.80 -109.22 -0.41 -13.41 16
14 C 0.13 2.14 4.90 -4.98 -0.02 2.12 16
15 C -0.20 -3.09 5.54 -104.76 -0.58 -3.67 16
16 C 0.05 0.65 11.88 -17.26 -0.21 0.45 16
17 N -0.48 -5.48 7.35 30.42 0.22 -5.26 16
18 H 0.44 3.31 8.96 -182.62 -1.64 1.67 16
19 N -0.29 -4.33 12.70 33.43 0.42 -3.90 16
20 C 0.14 2.16 6.74 -82.78 -0.56 1.60 16
21 C -0.01 -0.18 5.80 -104.90 -0.61 -0.79 16
22 C -0.10 -1.33 9.75 -39.26 -0.38 -1.72 16
23 C -0.12 -1.54 10.03 -39.64 -0.40 -1.94 16
24 C -0.11 -1.51 9.82 -39.49 -0.39 -1.90 16
25 C -0.04 -0.63 6.31 -39.54 -0.25 -0.88 16
26 Cl -0.06 -0.99 28.95 -51.86 -1.50 -2.49 16
27 C -0.08 -1.45 8.56 -39.22 -0.34 -1.79 16
28 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16
29 H 0.07 1.50 7.05 -51.93 -0.37 1.14 16
30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.09 2.31 6.25 -51.93 -0.32 1.99 16
32 H 0.01 0.20 7.22 -51.93 -0.37 -0.17 16
33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
34 H 0.33 6.18 6.54 -39.29 -0.26 5.92 16
35 H 0.07 1.31 7.77 -51.93 -0.40 0.91 16
36 H 0.03 0.48 7.20 -51.93 -0.37 0.11 16
37 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16
38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16
39 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
40 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16
41 H 0.19 3.80 4.72 -52.48 -0.25 3.55 16
LS Contribution 350.66 15.07 5.28 5.28
Total: -1.00 -28.58 350.66 -10.79 -39.37
By element:
Atomic # 1 Polarization: 14.83 SS G_CDS: -6.39 Total: 8.44 kcal
Atomic # 6 Polarization: -16.20 SS G_CDS: -4.03 Total: -20.23 kcal
Atomic # 7 Polarization: -47.39 SS G_CDS: 0.86 Total: -46.52 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -28.58 -10.79 -39.37 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184085693.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.579 kcal
(2) G-P(sol) polarization free energy of solvation -28.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.001 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds