Wall clock time and date at job start Tue Mar 31 2020 13:09:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53007 * 109.47191 * 2 1
4 4 H 1.08996 * 109.47038 * 174.11751 * 3 2 1
5 5 C 1.50701 * 109.47015 * 54.11809 * 3 2 1
6 6 H 1.08000 * 119.99931 * 239.99825 * 5 3 2
7 7 C 1.37871 * 120.00208 * 60.00353 * 5 3 2
8 8 N 1.31515 * 120.00041 * 359.97438 * 7 5 3
9 9 Si 1.86799 * 120.00071 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.47171 * 89.99772 * 9 7 5
11 11 H 1.48507 * 109.47340 * 209.99895 * 9 7 5
12 12 H 1.48499 * 109.47377 * 329.99929 * 9 7 5
13 13 N 1.46900 * 109.46966 * 294.11806 * 3 2 1
14 14 C 1.46895 * 110.99890 * 276.07934 * 13 3 2
15 15 C 1.50703 * 109.47130 * 175.71865 * 14 13 3
16 16 C 1.35084 * 126.07527 * 259.68846 * 15 14 13
17 17 N 1.35039 * 107.98059 * 179.83753 * 16 15 14
18 18 H 0.97001 * 125.93252 * 180.16561 * 17 16 15
19 19 N 1.40071 * 108.13595 * 0.42458 * 17 16 15
20 20 C 1.31618 * 108.10774 * 359.73852 * 19 17 16
21 21 C 1.48431 * 126.03542 * 179.97438 * 20 19 17
22 22 C 1.39347 * 120.11308 * 325.02296 * 21 20 19
23 23 C 1.38002 * 119.90633 * 179.97438 * 22 21 20
24 24 C 1.38319 * 120.13243 * 359.97438 * 23 22 21
25 25 C 1.38416 * 120.23095 * 0.02562 * 24 23 22
26 26 Cl 1.73595 * 119.95769 * 179.97438 * 25 24 23
27 27 C 1.38161 * 120.08747 * 359.74987 * 25 24 23
28 28 H 1.09000 * 109.46630 * 58.50357 * 1 2 3
29 29 H 1.09001 * 109.47178 * 298.50624 * 1 2 3
30 30 H 1.08999 * 109.47268 * 178.50388 * 1 2 3
31 31 H 1.09004 * 109.47164 * 119.99344 * 2 1 3
32 32 H 1.08992 * 109.47765 * 239.99337 * 2 1 3
33 33 H 0.96996 * 119.99833 * 180.02562 * 8 7 5
34 34 H 1.00899 * 110.99864 * 40.02907 * 13 3 2
35 35 H 1.09002 * 109.47243 * 295.71637 * 14 13 3
36 36 H 1.09001 * 109.47481 * 55.71606 * 14 13 3
37 37 H 1.08004 * 126.01267 * 359.97438 * 16 15 14
38 38 H 1.08002 * 120.05160 * 359.95769 * 22 21 20
39 39 H 1.07998 * 119.93731 * 179.97438 * 23 22 21
40 40 H 1.08004 * 119.88702 * 180.02562 * 24 23 22
41 41 H 1.08008 * 120.06759 * 180.25275 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1249 1.4443 0.1053
5 6 1.4223 2.1937 1.1512
6 1 0.8154 3.0669 0.9626
7 6 1.6321 1.7664 2.4451
8 7 2.3709 0.7028 2.6747
9 14 0.8670 2.6979 3.8721
10 1 -0.4752 2.1355 4.1676
11 1 1.7338 2.5663 5.0708
12 1 0.7342 4.1326 3.5124
13 7 1.6697 2.0928 -1.2641
14 6 2.6461 1.7884 -2.3185
15 6 2.1796 2.3833 -3.6221
16 6 1.5654 1.7187 -4.6251
17 7 1.3061 2.6021 -5.6131
18 1 0.8683 2.4019 -6.4552
19 7 1.7844 3.8564 -5.2131
20 6 2.3117 3.7297 -4.0139
21 6 2.9360 4.8142 -3.2155
22 6 3.6560 5.8241 -3.8506
23 6 4.2342 6.8306 -3.1042
24 6 4.0999 6.8389 -1.7276
25 6 3.3860 5.8384 -1.0909
26 17 3.2226 5.8554 0.6372
27 6 2.7994 4.8288 -1.8295
28 1 -0.3632 0.5369 -0.8763
29 1 -0.3633 0.4905 0.9031
30 1 -0.3634 -1.0273 -0.0268
31 1 1.8934 -0.5137 0.8901
32 1 1.8934 -0.5139 -0.8898
33 1 2.5181 0.4020 3.5850
34 1 0.7379 1.8288 -1.5471
35 1 3.6138 2.2130 -2.0511
36 1 2.7406 0.7078 -2.4254
37 1 1.3224 0.6664 -4.6343
38 1 3.7616 5.8192 -4.9254
39 1 4.7926 7.6134 -3.5959
40 1 4.5537 7.6288 -1.1473
41 1 2.2389 4.0506 -1.3327
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000184085693.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:42
Heat of formation + Delta-G solvation = 74.584082 kcal
Electronic energy + Delta-G solvation = -24617.885581 eV
Core-core repulsion = 21138.224318 eV
Total energy + Delta-G solvation = -3479.661263 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.115 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.19651 -39.85380 -38.26022 -37.20873 -34.82944 -33.65794 -32.77042 -31.52712
-30.69023 -30.54113 -28.16037 -25.61488 -24.80380 -24.54543 -23.48074 -21.57444
-21.05307 -20.63645 -18.88840 -17.87941 -17.70718 -16.71806 -16.47942 -16.29040
-15.91804 -15.66400 -15.36997 -14.89336 -14.74725 -14.39699 -14.32094 -14.22650
-13.95159 -13.78752 -13.52800 -12.98464 -12.80699 -12.61019 -12.41908 -12.41535
-12.35527 -12.27046 -11.91930 -11.62422 -11.58394 -11.47954 -11.29554 -10.85502
-10.81303 -10.33248 -9.67322 -9.61239 -9.27583 -8.76486 -7.96434 -6.00368
0.02785 0.40535 1.03216 1.36528 1.41635 1.45416 1.53710 1.79549
2.01543 2.51248 2.85387 3.34469 3.51138 3.83224 4.03719 4.12749
4.22270 4.30944 4.36118 4.47818 4.60169 4.65582 4.70546 4.75563
4.81940 4.85163 4.95817 5.15760 5.20168 5.21878 5.34714 5.48221
5.50622 5.54403 5.61233 5.69157 5.79267 5.86321 5.96671 6.00407
6.43892 6.46999 6.69896 6.79477 6.97591 7.11958 7.66104 9.09079
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.010792 B = 0.005847 C = 0.004004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2593.869549 B = 4787.381605 C = 6991.954618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.138 4.138
3 C 0.226 3.774
4 H -0.002 1.002
5 C -0.475 4.475
6 H 0.050 0.950
7 C 0.022 3.978
8 N -0.920 5.920
9 Si 0.927 3.073
10 H -0.278 1.278
11 H -0.291 1.291
12 H -0.275 1.275
13 N -0.675 5.675
14 C 0.140 3.860
15 C -0.237 4.237
16 C 0.083 3.917
17 N -0.460 5.460
18 H 0.456 0.544
19 N -0.308 5.308
20 C 0.119 3.881
21 C -0.023 4.023
22 C -0.096 4.096
23 C -0.109 4.109
24 C -0.108 4.108
25 C -0.055 4.055
26 Cl -0.081 7.081
27 C -0.108 4.108
28 H 0.050 0.950
29 H 0.037 0.963
30 H 0.040 0.960
31 H 0.058 0.942
32 H 0.031 0.969
33 H 0.255 0.745
34 H 0.333 0.667
35 H 0.050 0.950
36 H 0.037 0.963
37 H 0.214 0.786
38 H 0.141 0.859
39 H 0.168 0.832
40 H 0.150 0.850
41 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.941 5.462 -16.559 17.462
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.177 4.177
3 C 0.118 3.882
4 H 0.016 0.984
5 C -0.515 4.515
6 H 0.068 0.932
7 C -0.176 4.176
8 N -0.561 5.561
9 Si 0.755 3.245
10 H -0.204 1.204
11 H -0.218 1.218
12 H -0.200 1.200
13 N -0.306 5.306
14 C 0.010 3.990
15 C -0.248 4.248
16 C -0.066 4.066
17 N -0.170 5.170
18 H 0.304 0.696
19 N -0.133 5.133
20 C -0.046 4.046
21 C -0.026 4.026
22 C -0.115 4.115
23 C -0.127 4.127
24 C -0.127 4.127
25 C -0.081 4.081
26 Cl -0.052 7.052
27 C -0.128 4.128
28 H 0.069 0.931
29 H 0.056 0.944
30 H 0.059 0.941
31 H 0.077 0.923
32 H 0.049 0.951
33 H 0.064 0.936
34 H 0.152 0.848
35 H 0.068 0.932
36 H 0.056 0.944
37 H 0.230 0.770
38 H 0.158 0.842
39 H 0.186 0.814
40 H 0.168 0.832
41 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 1.001 6.733 -17.072 18.380
hybrid contribution -0.539 -1.379 1.589 2.172
sum 0.462 5.354 -15.483 16.389
Atomic orbital electron populations
1.21435 0.96156 0.99092 1.00776 1.21939 0.96228 1.00095 0.99486
1.18892 0.93680 0.89315 0.86331 0.98392 1.21156 1.29167 1.10628
0.90501 0.93200 1.25338 0.96187 0.95753 1.00326 1.69988 1.40653
1.25315 1.20159 0.86021 0.78509 0.79667 0.80300 1.20387 1.21763
1.19979 1.60605 1.04939 1.62123 1.02961 1.20007 0.95293 0.96661
0.87021 1.20162 1.12346 0.93200 0.99122 1.22777 0.97688 0.98059
0.88074 1.46135 1.47839 1.05125 1.17885 0.69622 1.77422 1.19361
1.02617 1.13874 1.20575 0.98363 0.93466 0.92153 1.17837 0.99377
0.94158 0.91196 1.21493 0.96100 0.93094 1.00838 1.21315 0.99836
0.99157 0.92364 1.21436 0.98003 0.97599 0.95692 1.21080 1.03307
0.98961 0.84800 1.98396 1.96856 1.98356 1.11579 1.22312 0.98341
0.98688 0.93509 0.93120 0.94358 0.94109 0.92321 0.95056 0.93607
0.84767 0.93186 0.94442 0.76962 0.84165 0.81439 0.83190 0.81305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.62 9.39 71.98 0.68 -3.94 16
2 C -0.14 -6.05 5.50 30.60 0.17 -5.89 16
3 C 0.23 10.62 2.33 44.17 0.10 10.72 16
4 H 0.00 -0.10 7.87 -2.39 -0.02 -0.12 16
5 C -0.48 -24.92 7.35 25.60 0.19 -24.73 16
6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16
7 C 0.02 1.18 5.23 84.65 0.44 1.62 16
8 N -0.92 -52.03 11.39 21.45 0.24 -51.78 16
9 Si 0.93 44.38 29.54 68.60 2.03 46.41 16
10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
12 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16
13 N -0.67 -26.23 3.80 -499.46 -1.90 -28.13 16
14 C 0.14 4.72 4.90 85.56 0.42 5.14 16
15 C -0.24 -6.84 5.54 -19.95 -0.11 -6.95 16
16 C 0.08 1.70 11.88 83.47 0.99 2.69 16
17 N -0.46 -9.00 7.35 -57.67 -0.42 -9.42 16
18 H 0.46 5.16 8.96 -213.34 -1.91 3.24 16
19 N -0.31 -8.53 12.70 -48.15 -0.61 -9.14 16
20 C 0.12 3.67 6.74 42.53 0.29 3.95 16
21 C -0.02 -0.74 5.80 -20.04 -0.12 -0.86 16
22 C -0.10 -2.47 9.75 22.48 0.22 -2.26 16
23 C -0.11 -2.40 10.03 22.23 0.22 -2.17 16
24 C -0.11 -2.81 9.82 22.33 0.22 -2.59 16
25 C -0.05 -1.85 6.31 22.29 0.14 -1.71 16
26 Cl -0.08 -3.01 28.95 -2.72 -0.08 -3.09 16
27 C -0.11 -3.92 8.56 22.50 0.19 -3.73 16
28 H 0.05 1.75 6.42 -2.39 -0.02 1.74 16
29 H 0.04 1.71 7.05 -2.39 -0.02 1.69 16
30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.06 3.00 6.25 -2.38 -0.01 2.99 16
32 H 0.03 1.22 7.22 -2.39 -0.02 1.20 16
33 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16
34 H 0.33 12.30 6.54 -89.69 -0.59 11.71 16
35 H 0.05 1.89 7.77 -2.39 -0.02 1.87 16
36 H 0.04 1.19 7.20 -2.39 -0.02 1.17 16
37 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16
38 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16
39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16
40 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16
41 H 0.17 6.96 4.72 -2.91 -0.01 6.94 16
Total: -1.00 -64.77 350.66 1.89 -62.89
By element:
Atomic # 1 Polarization: 24.38 SS G_CDS: -1.42 Total: 22.97 kcal
Atomic # 6 Polarization: -34.74 SS G_CDS: 4.04 Total: -30.69 kcal
Atomic # 7 Polarization: -95.79 SS G_CDS: -2.69 Total: -98.47 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal
Atomic # 17 Polarization: -3.01 SS G_CDS: -0.08 Total: -3.09 kcal
Total: -64.77 1.89 -62.89 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184085693.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.469 kcal
(2) G-P(sol) polarization free energy of solvation -64.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.584 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds