Wall clock time and date at job start Tue Mar 31 2020 13:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 C 1.50692 * 109.47216 * 239.99621 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99922 * 4 2 1 6 6 C 1.37882 * 120.00053 * 60.00013 * 4 2 1 7 7 N 1.31518 * 119.99625 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47210 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46914 * 120.00139 * 8 6 4 11 11 H 1.48493 * 109.47308 * 240.00147 * 8 6 4 12 12 C 1.53001 * 109.46801 * 119.99850 * 2 1 3 13 13 O 1.45203 * 109.47533 * 299.99668 * 12 2 1 14 14 C 1.34746 * 117.00262 * 180.02562 * 13 12 2 15 15 O 1.21504 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.47470 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.39780 * 120.03891 * 359.97438 * 16 14 13 18 18 C 1.37777 * 120.05111 * 179.97438 * 17 16 14 19 19 C 1.38834 * 120.03090 * 0.03716 * 18 17 16 20 20 C 1.39690 * 120.21162 * 0.03466 * 19 18 17 21 21 C 1.37956 * 120.01389 * 359.90908 * 20 19 18 22 22 O 1.36034 * 119.44098 * 179.86225 * 20 19 18 23 23 C 1.43004 * 116.66667 * 327.25202 * 22 20 19 24 24 C 1.50753 * 109.59054 * 46.35259 * 23 22 20 25 25 O 1.21280 * 120.11112 * 148.66151 * 24 23 22 26 26 N 1.35068 * 119.77327 * 328.70149 * 24 23 22 27 27 H 1.09005 * 109.47465 * 300.00215 * 1 2 3 28 28 H 1.08995 * 109.47146 * 60.00211 * 1 2 3 29 29 H 1.09003 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47247 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46880 * 299.99951 * 3 2 1 32 32 H 1.09005 * 109.47069 * 59.99542 * 3 2 1 33 33 H 0.97002 * 119.99475 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47146 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47346 * 60.00181 * 12 2 1 36 36 H 1.08003 * 119.97262 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.98625 * 180.02562 * 18 17 16 38 38 H 1.07997 * 120.11413 * 180.34743 * 21 20 19 39 39 H 1.09003 * 109.44824 * 166.38552 * 23 22 20 40 40 H 1.08999 * 109.45486 * 286.33335 * 23 22 20 41 41 H 0.97001 * 120.46389 * 181.58675 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2864 -3.6036 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 6 2.0399 -0.7212 1.2493 13 8 1.5560 -0.0367 2.4349 14 6 1.9184 -0.5484 3.6275 15 8 2.6200 -1.5393 3.6756 16 6 1.4635 0.0941 4.8745 17 6 0.6567 1.2343 4.8201 18 6 0.2311 1.8345 5.9850 19 6 0.6038 1.3079 7.2143 20 6 1.4111 0.1696 7.2758 21 6 1.8393 -0.4364 6.1128 22 8 1.7691 -0.3315 8.4887 23 6 1.9484 0.6142 9.5463 24 6 0.7933 1.5828 9.5594 25 8 0.4188 2.0690 10.6055 26 7 0.1764 1.9067 8.4023 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.3661 1.6446 3.8643 37 1 -0.3925 2.7152 5.9418 38 1 2.4588 -1.3198 6.1584 39 1 1.9918 0.0882 10.5001 40 1 2.8784 1.1609 9.3907 41 1 -0.5529 2.5462 8.3960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184759517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:57 Heat of formation + Delta-G solvation = -130.450180 kcal Electronic energy + Delta-G solvation = -26107.884608 eV Core-core repulsion = 22146.330476 eV Total energy + Delta-G solvation = -3961.554132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89159 -40.12037 -39.09893 -37.80665 -36.62933 -35.52100 -34.88637 -31.37919 -31.10971 -30.50497 -28.33455 -25.99591 -25.65701 -25.23589 -24.35980 -23.60795 -21.42576 -20.25644 -19.26383 -18.87783 -18.29016 -17.74422 -17.03786 -16.24779 -16.15904 -15.86158 -15.77213 -15.60358 -14.99084 -14.78719 -14.67904 -14.32123 -13.92813 -13.57938 -13.15517 -13.02617 -12.87037 -12.76736 -12.01774 -11.79426 -11.63784 -11.54937 -11.22995 -11.17217 -10.99837 -10.70296 -10.58058 -10.45870 -10.33820 -10.16435 -9.94305 -9.45488 -9.36369 -9.13860 -8.78757 -8.42615 -8.40726 -6.05358 -4.16690 0.25821 0.88239 1.67760 2.23083 2.58986 2.70136 3.22190 3.24967 3.33777 3.38750 3.45678 3.52809 4.14428 4.35816 4.43796 4.62045 4.66157 4.74055 4.91477 5.15264 5.21522 5.34164 5.52332 5.74636 5.97190 6.01822 6.04078 6.06755 6.11747 6.30185 6.43171 6.69428 6.80022 6.94439 6.97642 7.09245 7.10134 7.23569 7.36357 7.58502 7.67394 8.01811 8.08296 8.17513 8.35722 8.83516 9.49109 10.95915 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.002424 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.020527 B =11548.367938 C =12074.444516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.085 3.915 13 O -0.342 6.342 14 C 0.501 3.499 15 O -0.512 6.512 16 C -0.108 4.108 17 C -0.045 4.045 18 C -0.136 4.136 19 C 0.121 3.879 20 C 0.060 3.940 21 C -0.044 4.044 22 O -0.298 6.298 23 C 0.050 3.950 24 C 0.492 3.508 25 O -0.510 6.510 26 N -0.657 5.657 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 3.396 20.006 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.345 3.655 15 O -0.403 6.403 16 C -0.110 4.110 17 C -0.064 4.064 18 C -0.157 4.157 19 C 0.025 3.975 20 C 0.014 3.986 21 C -0.063 4.063 22 O -0.212 6.212 23 C -0.028 4.028 24 C 0.279 3.721 25 O -0.384 6.384 26 N -0.304 5.304 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.120 0.880 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.846 3.184 20.538 20.800 hybrid contribution 0.020 -0.062 -0.893 0.895 sum -0.826 3.122 19.645 19.909 Atomic orbital electron populations 1.21779 0.97289 0.99033 1.00668 1.18254 0.93439 0.93083 0.88237 1.21778 0.98151 0.98164 1.00669 1.20972 1.31908 1.12304 0.89757 0.92406 1.24857 0.94790 0.94915 0.98812 1.69837 1.36399 1.22582 1.23221 0.86485 0.78664 0.79706 0.82850 1.19755 1.20969 1.20967 1.23743 0.98361 0.95896 0.80765 1.86561 1.68997 1.55646 1.14550 1.20839 0.77765 0.81975 0.84881 1.90819 1.35721 1.25352 1.88396 1.19037 1.02964 0.98184 0.90798 1.21448 0.92931 0.92724 0.99265 1.20642 1.03750 1.01790 0.89496 1.18270 0.98141 0.94164 0.86972 1.18247 0.99670 0.94622 0.86037 1.20542 0.97558 1.00422 0.87817 1.86309 1.85971 1.32935 1.16004 1.23226 0.96134 0.90931 0.92551 1.21629 0.84935 0.82394 0.83136 1.90824 1.64263 1.53377 1.29931 1.43694 1.36526 1.44547 1.05644 0.96454 0.89722 0.95771 0.95780 0.89717 0.96460 0.92949 0.92316 0.92313 0.82753 0.83926 0.82766 0.83473 0.87984 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.11 37.16 0.30 -2.69 16 2 C 0.07 1.65 0.58 -155.67 -0.09 1.56 16 3 C -0.13 -2.99 8.11 37.16 0.30 -2.68 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.08 1.80 4.27 37.16 0.16 1.96 16 13 O -0.34 -6.35 8.11 -40.62 -0.33 -6.68 16 14 C 0.50 8.45 7.89 34.49 0.27 8.72 16 15 O -0.51 -9.84 16.13 -19.27 -0.31 -10.15 16 16 C -0.11 -1.39 5.88 -104.96 -0.62 -2.01 16 17 C -0.04 -0.47 9.60 -39.17 -0.38 -0.85 16 18 C -0.14 -1.12 9.92 -39.53 -0.39 -1.52 16 19 C 0.12 1.08 6.55 -83.50 -0.55 0.53 16 20 C 0.06 0.61 6.43 -39.14 -0.25 0.36 16 21 C -0.04 -0.51 9.53 -39.08 -0.37 -0.88 16 22 O -0.30 -2.79 10.45 -19.85 -0.21 -3.00 16 23 C 0.05 0.33 7.17 36.03 0.26 0.59 16 24 C 0.49 4.36 7.94 -10.83 -0.09 4.28 16 25 O -0.51 -5.99 17.95 5.56 0.10 -5.89 16 26 N -0.66 -5.13 5.45 -9.64 -0.05 -5.18 16 27 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 32 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 33 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.15 1.61 7.59 -52.48 -0.40 1.22 16 37 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.15 1.79 7.64 -52.49 -0.40 1.38 16 39 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.42 2.47 8.88 -40.82 -0.36 2.11 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -30.42 348.00 -6.96 -37.38 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.09 Total: 0.23 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.81 Total: -4.51 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.47 Total: -28.03 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.75 Total: -25.72 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.42 -6.96 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184759517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.073 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds