Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 C 1.50692 * 109.47216 * 239.99621 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99922 * 4 2 1 6 6 C 1.37882 * 120.00053 * 60.00013 * 4 2 1 7 7 N 1.31518 * 119.99625 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47210 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46914 * 120.00139 * 8 6 4 11 11 H 1.48493 * 109.47308 * 240.00147 * 8 6 4 12 12 C 1.53001 * 109.46801 * 119.99850 * 2 1 3 13 13 O 1.45203 * 109.47533 * 299.99668 * 12 2 1 14 14 C 1.34746 * 117.00262 * 180.02562 * 13 12 2 15 15 O 1.21504 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.47470 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.39780 * 120.03891 * 359.97438 * 16 14 13 18 18 C 1.37777 * 120.05111 * 179.97438 * 17 16 14 19 19 C 1.38834 * 120.03090 * 0.03716 * 18 17 16 20 20 C 1.39690 * 120.21162 * 0.03466 * 19 18 17 21 21 C 1.37956 * 120.01389 * 359.90908 * 20 19 18 22 22 O 1.36034 * 119.44098 * 179.86225 * 20 19 18 23 23 C 1.43004 * 116.66667 * 327.25202 * 22 20 19 24 24 C 1.50753 * 109.59054 * 46.35259 * 23 22 20 25 25 O 1.21280 * 120.11112 * 148.66151 * 24 23 22 26 26 N 1.35068 * 119.77327 * 328.70149 * 24 23 22 27 27 H 1.09005 * 109.47465 * 300.00215 * 1 2 3 28 28 H 1.08995 * 109.47146 * 60.00211 * 1 2 3 29 29 H 1.09003 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47247 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46880 * 299.99951 * 3 2 1 32 32 H 1.09005 * 109.47069 * 59.99542 * 3 2 1 33 33 H 0.97002 * 119.99475 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47146 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47346 * 60.00181 * 12 2 1 36 36 H 1.08003 * 119.97262 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.98625 * 180.02562 * 18 17 16 38 38 H 1.07997 * 120.11413 * 180.34743 * 21 20 19 39 39 H 1.09003 * 109.44824 * 166.38552 * 23 22 20 40 40 H 1.08999 * 109.45486 * 286.33335 * 23 22 20 41 41 H 0.97001 * 120.46389 * 181.58675 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2864 -3.6036 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 6 2.0399 -0.7212 1.2493 13 8 1.5560 -0.0367 2.4349 14 6 1.9184 -0.5484 3.6275 15 8 2.6200 -1.5393 3.6756 16 6 1.4635 0.0941 4.8745 17 6 0.6567 1.2343 4.8201 18 6 0.2311 1.8345 5.9850 19 6 0.6038 1.3079 7.2143 20 6 1.4111 0.1696 7.2758 21 6 1.8393 -0.4364 6.1128 22 8 1.7691 -0.3315 8.4887 23 6 1.9484 0.6142 9.5463 24 6 0.7933 1.5828 9.5594 25 8 0.4188 2.0690 10.6055 26 7 0.1764 1.9067 8.4023 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.3661 1.6446 3.8643 37 1 -0.3925 2.7152 5.9418 38 1 2.4588 -1.3198 6.1584 39 1 1.9918 0.0882 10.5001 40 1 2.8784 1.1609 9.3907 41 1 -0.5529 2.5462 8.3960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184759517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -148.575076 kcal Electronic energy + Delta-G solvation = -26108.670562 eV Core-core repulsion = 22146.330476 eV Total energy + Delta-G solvation = -3962.340086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62566 -41.42295 -39.96306 -38.67421 -38.12962 -36.58674 -36.33083 -33.25863 -31.89244 -31.39846 -29.02607 -27.58626 -27.51886 -27.11227 -25.36567 -24.50355 -22.49083 -21.12551 -20.65234 -20.11887 -19.03386 -18.74782 -17.94325 -17.76010 -17.46809 -17.30365 -16.95617 -16.59685 -16.34250 -15.73123 -15.49100 -15.04925 -15.04229 -14.88656 -14.77367 -14.38047 -14.07639 -13.61319 -13.60724 -13.29828 -13.12119 -12.82661 -12.60575 -12.57619 -12.37487 -12.29879 -12.11982 -12.01730 -11.70077 -11.68908 -11.30915 -11.23923 -11.17155 -10.69330 -10.37864 -9.91259 -9.20497 -8.02819 -6.20022 -0.63270 0.10636 0.90880 1.43214 1.46451 1.53639 1.54331 1.57670 1.67509 2.24756 2.47627 2.58323 2.81571 3.20968 3.42588 3.63584 3.93285 4.00444 4.01136 4.13754 4.28123 4.31359 4.33220 4.57815 4.64971 4.78605 4.85672 4.96260 5.09845 5.18505 5.23891 5.28309 5.28782 5.34954 5.41747 5.58859 5.62026 5.68496 5.68814 6.08329 6.13335 6.21965 6.40649 6.59090 6.73334 6.85743 7.47861 8.96763 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.002424 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.020527 B =11548.367938 C =12074.444516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.062 3.938 3 C -0.120 4.120 4 C -0.532 4.532 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.097 3.903 13 O -0.342 6.342 14 C 0.501 3.499 15 O -0.544 6.544 16 C -0.127 4.127 17 C -0.042 4.042 18 C -0.120 4.120 19 C 0.133 3.867 20 C 0.059 3.941 21 C -0.049 4.049 22 O -0.307 6.307 23 C 0.047 3.953 24 C 0.493 3.507 25 O -0.540 6.540 26 N -0.649 5.649 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.146 0.854 39 H 0.170 0.830 40 H 0.126 0.874 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 4.398 21.479 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.024 3.976 13 O -0.257 6.257 14 C 0.348 3.652 15 O -0.436 6.436 16 C -0.129 4.129 17 C -0.061 4.061 18 C -0.140 4.140 19 C 0.036 3.964 20 C 0.012 3.988 21 C -0.068 4.068 22 O -0.222 6.222 23 C -0.030 4.030 24 C 0.281 3.719 25 O -0.416 6.416 26 N -0.296 5.296 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.143 0.857 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.329 4.198 22.018 22.454 hybrid contribution 0.141 -0.335 -1.200 1.254 sum -1.188 3.863 20.819 21.207 Atomic orbital electron populations 1.21635 0.96946 0.98641 1.00544 1.18261 0.93720 0.93326 0.88516 1.21632 0.97754 0.97811 1.00547 1.21240 1.32139 1.12400 0.91232 0.93362 1.25473 0.95041 0.95581 1.01049 1.69940 1.36790 1.23223 1.23712 0.85635 0.78140 0.78687 0.79922 1.19831 1.20654 1.20618 1.23302 0.97683 0.95267 0.81372 1.86534 1.69152 1.55448 1.14599 1.21525 0.76925 0.81593 0.85202 1.90798 1.37306 1.26871 1.88622 1.18813 1.05339 0.99717 0.89050 1.21505 0.92340 0.91883 1.00375 1.20908 1.02868 1.02108 0.88100 1.18315 0.97093 0.93401 0.87571 1.18213 0.99738 0.94800 0.86001 1.20431 0.97869 1.00501 0.88030 1.86306 1.85937 1.33934 1.16010 1.23528 0.96104 0.90744 0.92619 1.21974 0.85054 0.82133 0.82740 1.90822 1.65237 1.54664 1.30917 1.43668 1.36577 1.44334 1.05059 0.94356 0.91872 0.96258 0.96217 0.91876 0.94346 0.92883 0.93109 0.93177 0.82486 0.80378 0.83594 0.81254 0.85685 0.72980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.11 71.98 0.58 -4.92 16 2 C 0.06 2.93 0.58 -52.93 -0.03 2.90 16 3 C -0.12 -5.48 8.11 71.98 0.58 -4.89 16 4 C -0.53 -27.96 8.01 25.60 0.21 -27.76 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.49 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.78 9.35 21.45 0.20 -47.58 16 8 Si 0.95 42.03 29.54 68.60 2.03 44.05 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.10 4.16 4.27 71.98 0.31 4.47 16 13 O -0.34 -12.59 8.11 -56.56 -0.46 -13.05 16 14 C 0.50 16.95 7.89 70.26 0.55 17.50 16 15 O -0.54 -21.37 16.13 19.82 0.32 -21.05 16 16 C -0.13 -3.17 5.88 -20.08 -0.12 -3.29 16 17 C -0.04 -0.80 9.60 22.53 0.22 -0.58 16 18 C -0.12 -1.56 9.92 22.30 0.22 -1.33 16 19 C 0.13 1.97 6.55 38.38 0.25 2.22 16 20 C 0.06 1.08 6.43 22.55 0.15 1.23 16 21 C -0.05 -1.10 9.53 22.59 0.22 -0.88 16 22 O -0.31 -5.12 10.45 -93.93 -0.98 -6.10 16 23 C 0.05 0.51 7.17 71.25 0.51 1.02 16 24 C 0.49 7.48 7.94 87.63 0.70 8.18 16 25 O -0.54 -11.62 17.95 -3.03 -0.05 -11.68 16 26 N -0.65 -8.14 5.45 -302.64 -1.65 -9.79 16 27 H 0.04 1.54 7.68 -2.38 -0.02 1.52 16 28 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 32 H 0.04 1.54 7.68 -2.38 -0.02 1.52 16 33 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 34 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.16 2.91 7.59 -2.91 -0.02 2.89 16 37 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.15 3.43 7.64 -2.91 -0.02 3.41 16 39 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.43 3.64 8.88 -92.71 -0.82 2.82 16 Total: -1.00 -65.68 348.00 4.43 -61.24 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.25 Total: 8.17 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.78 Total: -4.21 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -1.45 Total: -57.38 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -1.18 Total: -51.88 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -65.68 4.43 -61.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184759517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.331 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds