Wall clock time and date at job start Tue Mar 31 2020 13:02:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47415 * 2 1
4 4 C 1.50696 * 109.46923 * 239.99966 * 2 1 3
5 5 H 1.08004 * 119.99967 * 239.99721 * 4 2 1
6 6 C 1.37875 * 120.00542 * 60.00269 * 4 2 1
7 7 N 1.31520 * 119.99521 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00405 * 179.97438 * 6 4 2
9 9 H 1.48507 * 109.46904 * 90.00224 * 8 6 4
10 10 H 1.48498 * 109.47118 * 209.99881 * 8 6 4
11 11 H 1.48499 * 109.47134 * 330.00401 * 8 6 4
12 12 C 1.52997 * 109.46817 * 120.00127 * 2 1 3
13 13 O 1.42905 * 109.47264 * 299.99852 * 12 2 1
14 14 C 1.34907 * 117.00058 * 180.02562 * 13 12 2
15 15 O 1.21621 * 120.00192 * 359.97438 * 14 13 12
16 16 C 1.46233 * 119.99579 * 179.97438 * 14 13 12
17 17 C 1.34919 * 119.99793 * 179.97438 * 16 14 13
18 18 C 1.47165 * 119.99942 * 179.97438 * 17 16 14
19 19 C 1.39853 * 120.17400 * 359.72829 * 18 17 16
20 20 C 1.37889 * 119.82222 * 179.73846 * 19 18 17
21 21 C 1.38406 * 120.17554 * 0.54174 * 20 19 18
22 22 N 1.48017 * 119.82503 * 179.74221 * 21 20 19
23 23 O 1.21807 * 119.99814 * 179.97438 * 22 21 20
24 24 O 1.21795 * 120.00352 * 359.97096 * 22 21 20
25 25 C 1.38408 * 120.34884 * 359.71164 * 21 20 19
26 26 C 1.37886 * 120.16849 * 0.02562 * 25 21 20
27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3
28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3
29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3
30 30 H 1.08988 * 109.47529 * 179.97438 * 3 2 1
31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1
32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1
33 33 H 0.96999 * 120.00022 * 179.97438 * 7 6 4
34 34 H 1.09001 * 109.47289 * 179.97438 * 12 2 1
35 35 H 1.09004 * 109.47261 * 59.99941 * 12 2 1
36 36 H 1.07995 * 120.00327 * 359.97438 * 16 14 13
37 37 H 1.08004 * 119.99586 * 0.02562 * 17 16 14
38 38 H 1.07999 * 120.08601 * 359.97438 * 19 18 17
39 39 H 1.08006 * 119.90907 * 180.25209 * 20 19 18
40 40 H 1.07994 * 119.91527 * 180.02562 * 25 21 20
41 41 H 1.08005 * 120.08661 * 179.97438 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9428 0.8297 -2.6034
8 14 2.3225 -1.1196 -4.0079
9 1 1.3447 -2.1616 -4.4124
10 1 2.4873 -0.1403 -5.1120
11 1 3.6308 -1.7568 -3.7119
12 6 2.0399 -0.7213 1.2492
13 8 1.5636 -0.0476 2.4161
14 6 1.9265 -0.5600 3.6101
15 8 2.6280 -1.5523 3.6582
16 6 1.4762 0.0778 4.8466
17 6 1.8387 -0.4349 6.0408
18 6 1.3860 0.2073 7.2852
19 6 0.5847 1.3524 7.2341
20 6 0.1603 1.9450 8.4045
21 6 0.5343 1.4162 9.6276
22 7 0.0790 2.0620 10.8792
23 8 0.4059 1.5989 11.9573
24 8 -0.6226 3.0564 10.8311
25 6 1.3315 0.2862 9.6866
26 6 1.7596 -0.3211 8.5251
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 3.1300 1.4425 0.0005
31 1 1.6768 1.9563 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 0.7088 1.1613 -3.4844
34 1 3.1299 -0.7217 1.2491
35 1 1.6766 -1.7490 1.2492
36 1 0.8536 0.9592 4.8039
37 1 2.4617 -1.3161 6.0834
38 1 0.2961 1.7691 6.2805
39 1 -0.4619 2.8271 8.3667
40 1 1.6189 -0.1208 10.6447
41 1 2.3820 -1.2025 8.5726
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000184778016.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:12
Heat of formation + Delta-G solvation = -54.298430 kcal
Electronic energy + Delta-G solvation = -24961.136595 eV
Core-core repulsion = 21002.884651 eV
Total energy + Delta-G solvation = -3958.251944 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.52636 -40.34291 -39.85782 -36.98625 -36.91319 -35.05079 -34.79203 -32.10088
-31.42866 -31.03116 -27.46431 -25.92700 -25.69992 -25.23974 -24.08013 -23.63147
-22.00689 -19.93066 -19.70846 -19.00801 -18.96608 -17.93916 -17.87418 -16.37650
-16.34602 -15.98754 -15.75875 -15.62599 -15.25067 -14.73194 -14.38597 -13.96930
-13.39010 -13.30399 -13.18731 -12.94907 -12.56120 -12.01874 -11.91716 -11.77617
-11.62802 -11.55241 -11.48133 -11.25889 -11.23428 -11.03109 -10.77160 -10.49756
-10.48440 -10.21246 -9.99859 -9.98036 -9.49869 -9.39869 -9.20686 -8.83322
-8.43623 -6.07988 -4.19713 -0.87605 0.40760 0.44620 1.00828 1.35044
2.71191 2.96644 3.08213 3.23505 3.30749 3.34325 3.78416 3.92583
4.00752 4.28012 4.29712 4.35238 4.58273 4.77428 5.03591 5.09431
5.18127 5.18577 5.22411 5.27035 5.69084 5.77237 5.87078 5.96166
6.00039 6.02872 6.37896 6.64191 6.90145 6.90534 7.05216 7.05580
7.26650 7.31601 7.54488 7.64066 7.97879 7.99401 8.12532 8.32227
8.80080 9.46078 10.93261
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.036162 B = 0.001921 C = 0.001847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.113590 B =14569.851570 C =15152.901131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.070 3.930
3 C -0.130 4.130
4 C -0.512 4.512
5 H 0.057 0.943
6 C 0.068 3.932
7 N -0.882 5.882
8 Si 0.896 3.104
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.274 1.274
12 C 0.080 3.920
13 O -0.334 6.334
14 C 0.481 3.519
15 O -0.513 6.513
16 C -0.138 4.138
17 C -0.055 4.055
18 C -0.007 4.007
19 C -0.107 4.107
20 C -0.051 4.051
21 C -0.046 4.046
22 N 0.028 4.972
23 O -0.162 6.162
24 O -0.159 6.159
25 C -0.054 4.054
26 C -0.100 4.100
27 H 0.016 0.984
28 H 0.085 0.915
29 H 0.023 0.977
30 H 0.023 0.977
31 H 0.085 0.915
32 H 0.016 0.984
33 H 0.261 0.739
34 H 0.056 0.944
35 H 0.056 0.944
36 H 0.145 0.855
37 H 0.148 0.852
38 H 0.156 0.844
39 H 0.158 0.842
40 H 0.157 0.843
41 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.636 0.928 21.428 21.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.070 3.930
3 C -0.188 4.188
4 C -0.551 4.551
5 H 0.075 0.925
6 C -0.134 4.134
7 N -0.520 5.520
8 Si 0.724 3.276
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.199 1.199
12 C 0.007 3.993
13 O -0.249 6.249
14 C 0.326 3.674
15 O -0.405 6.405
16 C -0.156 4.156
17 C -0.073 4.073
18 C -0.008 4.008
19 C -0.125 4.125
20 C -0.070 4.070
21 C -0.129 4.129
22 N 0.547 4.453
23 O -0.377 6.377
24 O -0.375 6.375
25 C -0.073 4.073
26 C -0.118 4.118
27 H 0.035 0.965
28 H 0.103 0.897
29 H 0.042 0.958
30 H 0.042 0.958
31 H 0.103 0.897
32 H 0.035 0.965
33 H 0.071 0.929
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.163 0.837
37 H 0.166 0.834
38 H 0.174 0.826
39 H 0.175 0.825
40 H 0.174 0.826
41 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -0.295 0.454 20.629 20.636
hybrid contribution 0.291 -0.433 -0.593 0.790
sum -0.004 0.021 20.035 20.035
Atomic orbital electron populations
1.21780 0.97282 0.98998 1.00711 1.18260 0.93437 0.93071 0.88233
1.21775 0.98122 0.98151 1.00708 1.20924 1.32045 1.12316 0.89766
0.92488 1.24866 0.94800 0.94911 0.98831 1.69823 1.36275 1.22524
1.23376 0.86530 0.79284 0.79379 0.82436 1.20622 1.21120 1.19905
1.23356 0.98362 0.96056 0.81494 1.86223 1.68694 1.55443 1.14558
1.21138 0.78169 0.82373 0.85680 1.90858 1.35617 1.25398 1.88629
1.22595 1.01522 1.01372 0.90144 1.22358 0.96554 0.98667 0.89717
1.19445 0.94117 0.93675 0.93525 1.21580 0.97176 0.95042 0.98747
1.21027 0.96820 0.99677 0.89428 1.21293 1.07444 0.99738 0.84389
1.43640 0.98791 1.00106 1.02734 1.94546 1.60027 1.66701 1.16459
1.94554 1.34103 1.14757 1.94115 1.21003 0.93203 0.91900 1.01183
1.21429 0.99922 1.00610 0.89848 0.96494 0.89655 0.95793 0.95788
0.89656 0.96498 0.92851 0.92568 0.92576 0.83736 0.83422 0.82637
0.82452 0.82578 0.82816
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.01 8.10 37.16 0.30 -2.71 16
2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16
3 C -0.13 -3.01 8.10 37.16 0.30 -2.71 16
4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16
5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16
6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16
7 N -0.88 -23.39 9.35 55.43 0.52 -22.87 16
8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16
9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
12 C 0.08 1.70 4.18 37.16 0.16 1.85 16
13 O -0.33 -6.15 8.77 -41.06 -0.36 -6.51 16
14 C 0.48 7.52 7.87 33.94 0.27 7.79 16
15 O -0.51 -9.25 16.00 -19.36 -0.31 -9.56 16
16 C -0.14 -1.42 9.54 -37.55 -0.36 -1.78 16
17 C -0.05 -0.45 9.46 -37.14 -0.35 -0.80 16
18 C -0.01 -0.05 5.87 -105.06 -0.62 -0.66 16
19 C -0.11 -0.66 9.41 -39.11 -0.37 -1.03 16
20 C -0.05 -0.34 9.53 -39.65 -0.38 -0.72 16
21 C -0.05 -0.37 6.86 -79.82 -0.55 -0.92 16
22 N 0.03 0.30 4.45 34.02 0.15 0.45 16
23 O -0.16 -1.83 18.43 -29.46 -0.54 -2.37 16
24 O -0.16 -1.83 18.43 -29.46 -0.54 -2.37 16
25 C -0.05 -0.34 9.54 -39.65 -0.38 -0.72 16
26 C -0.10 -0.54 9.80 -39.10 -0.38 -0.93 16
27 H 0.02 0.34 7.68 -51.93 -0.40 -0.05 16
28 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16
29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.02 0.53 8.14 -51.94 -0.42 0.11 16
31 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16
32 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16
33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16
34 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16
35 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16
36 H 0.15 1.13 6.08 -52.49 -0.32 0.81 16
37 H 0.15 1.19 7.52 -52.48 -0.39 0.80 16
38 H 0.16 0.70 6.17 -52.49 -0.32 0.37 16
39 H 0.16 0.88 7.60 -52.48 -0.40 0.48 16
40 H 0.16 0.77 7.59 -52.49 -0.40 0.37 16
41 H 0.15 0.48 8.06 -52.48 -0.42 0.05 16
LS Contribution 357.42 15.07 5.39 5.39
Total: -1.00 -29.95 357.42 -8.45 -38.40
By element:
Atomic # 1 Polarization: 2.67 SS G_CDS: -4.92 Total: -2.24 kcal
Atomic # 6 Polarization: -10.87 SS G_CDS: -2.81 Total: -13.68 kcal
Atomic # 7 Polarization: -23.09 SS G_CDS: 0.67 Total: -22.42 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: -1.76 Total: -20.81 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -29.95 -8.45 -38.40 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184778016.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.902 kcal
(2) G-P(sol) polarization free energy of solvation -29.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds