Wall clock time and date at job start Tue Mar 31 2020 13:02:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47415 * 2 1
4 4 C 1.50696 * 109.46923 * 239.99966 * 2 1 3
5 5 H 1.08004 * 119.99967 * 239.99721 * 4 2 1
6 6 C 1.37875 * 120.00542 * 60.00269 * 4 2 1
7 7 N 1.31520 * 119.99521 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00405 * 179.97438 * 6 4 2
9 9 H 1.48507 * 109.46904 * 90.00224 * 8 6 4
10 10 H 1.48498 * 109.47118 * 209.99881 * 8 6 4
11 11 H 1.48499 * 109.47134 * 330.00401 * 8 6 4
12 12 C 1.52997 * 109.46817 * 120.00127 * 2 1 3
13 13 O 1.42905 * 109.47264 * 299.99852 * 12 2 1
14 14 C 1.34907 * 117.00058 * 180.02562 * 13 12 2
15 15 O 1.21621 * 120.00192 * 359.97438 * 14 13 12
16 16 C 1.46233 * 119.99579 * 179.97438 * 14 13 12
17 17 C 1.34919 * 119.99793 * 179.97438 * 16 14 13
18 18 C 1.47165 * 119.99942 * 179.97438 * 17 16 14
19 19 C 1.39853 * 120.17400 * 359.72829 * 18 17 16
20 20 C 1.37889 * 119.82222 * 179.73846 * 19 18 17
21 21 C 1.38406 * 120.17554 * 0.54174 * 20 19 18
22 22 N 1.48017 * 119.82503 * 179.74221 * 21 20 19
23 23 O 1.21807 * 119.99814 * 179.97438 * 22 21 20
24 24 O 1.21795 * 120.00352 * 359.97096 * 22 21 20
25 25 C 1.38408 * 120.34884 * 359.71164 * 21 20 19
26 26 C 1.37886 * 120.16849 * 0.02562 * 25 21 20
27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3
28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3
29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3
30 30 H 1.08988 * 109.47529 * 179.97438 * 3 2 1
31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1
32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1
33 33 H 0.96999 * 120.00022 * 179.97438 * 7 6 4
34 34 H 1.09001 * 109.47289 * 179.97438 * 12 2 1
35 35 H 1.09004 * 109.47261 * 59.99941 * 12 2 1
36 36 H 1.07995 * 120.00327 * 359.97438 * 16 14 13
37 37 H 1.08004 * 119.99586 * 0.02562 * 17 16 14
38 38 H 1.07999 * 120.08601 * 359.97438 * 19 18 17
39 39 H 1.08006 * 119.90907 * 180.25209 * 20 19 18
40 40 H 1.07994 * 119.91527 * 180.02562 * 25 21 20
41 41 H 1.08005 * 120.08661 * 179.97438 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9428 0.8297 -2.6034
8 14 2.3225 -1.1196 -4.0079
9 1 1.3447 -2.1616 -4.4124
10 1 2.4873 -0.1403 -5.1120
11 1 3.6308 -1.7568 -3.7119
12 6 2.0399 -0.7213 1.2492
13 8 1.5636 -0.0476 2.4161
14 6 1.9265 -0.5600 3.6101
15 8 2.6280 -1.5523 3.6582
16 6 1.4762 0.0778 4.8466
17 6 1.8387 -0.4349 6.0408
18 6 1.3860 0.2073 7.2852
19 6 0.5847 1.3524 7.2341
20 6 0.1603 1.9450 8.4045
21 6 0.5343 1.4162 9.6276
22 7 0.0790 2.0620 10.8792
23 8 0.4059 1.5989 11.9573
24 8 -0.6226 3.0564 10.8311
25 6 1.3315 0.2862 9.6866
26 6 1.7596 -0.3211 8.5251
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 3.1300 1.4425 0.0005
31 1 1.6768 1.9563 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 0.7088 1.1613 -3.4844
34 1 3.1299 -0.7217 1.2491
35 1 1.6766 -1.7490 1.2492
36 1 0.8536 0.9592 4.8039
37 1 2.4617 -1.3161 6.0834
38 1 0.2961 1.7691 6.2805
39 1 -0.4619 2.8271 8.3667
40 1 1.6189 -0.1208 10.6447
41 1 2.3820 -1.2025 8.5726
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000184778016.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:11
Heat of formation + Delta-G solvation = -67.382289 kcal
Electronic energy + Delta-G solvation = -24961.703954 eV
Core-core repulsion = 21002.884651 eV
Total energy + Delta-G solvation = -3958.819303 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.27211 -41.53960 -40.54714 -38.48011 -37.71140 -36.67567 -35.60265 -33.27539
-32.59361 -31.82344 -28.43352 -27.56678 -27.43626 -27.01270 -24.93191 -24.27247
-22.87926 -20.84726 -20.73329 -20.41131 -19.77974 -19.01538 -18.62675 -17.84966
-17.52338 -17.39603 -16.94486 -16.59045 -16.22530 -15.79092 -15.00929 -14.84997
-14.81612 -14.67573 -14.43919 -13.89187 -13.71732 -13.35283 -13.26971 -13.05575
-12.84914 -12.77133 -12.63492 -12.35115 -12.33607 -12.33277 -12.33026 -12.14324
-11.91306 -11.76674 -11.71018 -11.24817 -11.19039 -10.73402 -10.45989 -10.40253
-9.88324 -8.04821 -6.22542 -1.57460 -0.35299 -0.05144 0.33901 0.59029
1.42717 1.44906 1.53146 1.81154 1.81501 2.39018 2.44984 3.18670
3.27838 3.30848 3.45402 3.72134 3.79137 3.97584 4.02002 4.26964
4.27390 4.29228 4.59379 4.62524 4.66149 4.67565 4.77650 4.84123
5.05580 5.07995 5.10378 5.19623 5.23230 5.23733 5.37148 5.40184
5.58401 5.64486 5.66022 6.08949 6.18640 6.37481 6.42660 6.71936
6.83413 7.45402 8.94579
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.036162 B = 0.001921 C = 0.001847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.113590 B =14569.851570 C =15152.901131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.059 3.941
3 C -0.119 4.119
4 C -0.532 4.532
5 H 0.049 0.951
6 C 0.027 3.973
7 N -0.899 5.899
8 Si 0.951 3.049
9 H -0.278 1.278
10 H -0.282 1.282
11 H -0.273 1.273
12 C 0.095 3.905
13 O -0.342 6.342
14 C 0.480 3.520
15 O -0.546 6.546
16 C -0.163 4.163
17 C -0.015 4.015
18 C -0.016 4.016
19 C -0.098 4.098
20 C -0.055 4.055
21 C -0.057 4.057
22 N 0.029 4.971
23 O -0.177 6.177
24 O -0.184 6.184
25 C -0.055 4.055
26 C -0.084 4.084
27 H 0.035 0.965
28 H 0.062 0.938
29 H 0.019 0.981
30 H 0.019 0.981
31 H 0.062 0.938
32 H 0.035 0.965
33 H 0.262 0.738
34 H 0.047 0.953
35 H 0.047 0.953
36 H 0.171 0.829
37 H 0.151 0.849
38 H 0.175 0.825
39 H 0.166 0.834
40 H 0.170 0.830
41 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.388 0.573 22.502 22.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.059 3.941
3 C -0.177 4.177
4 C -0.570 4.570
5 H 0.067 0.933
6 C -0.173 4.173
7 N -0.537 5.537
8 Si 0.777 3.223
9 H -0.203 1.203
10 H -0.208 1.208
11 H -0.198 1.198
12 C 0.021 3.979
13 O -0.257 6.257
14 C 0.328 3.672
15 O -0.439 6.439
16 C -0.181 4.181
17 C -0.033 4.033
18 C -0.016 4.016
19 C -0.116 4.116
20 C -0.074 4.074
21 C -0.140 4.140
22 N 0.543 4.457
23 O -0.391 6.391
24 O -0.396 6.396
25 C -0.074 4.074
26 C -0.102 4.102
27 H 0.054 0.946
28 H 0.081 0.919
29 H 0.038 0.962
30 H 0.038 0.962
31 H 0.081 0.919
32 H 0.054 0.946
33 H 0.071 0.929
34 H 0.066 0.934
35 H 0.066 0.934
36 H 0.188 0.812
37 H 0.169 0.831
38 H 0.192 0.808
39 H 0.184 0.816
40 H 0.187 0.813
41 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -0.065 0.123 21.730 21.731
hybrid contribution 0.242 -0.362 -0.782 0.895
sum 0.176 -0.239 20.949 20.951
Atomic orbital electron populations
1.21627 0.97019 0.98618 1.00437 1.18288 0.93685 0.93308 0.88810
1.21622 0.97752 0.97881 1.00433 1.21205 1.32226 1.12417 0.91199
0.93293 1.25509 0.95069 0.95594 1.01161 1.69936 1.36728 1.23224
1.23806 0.85668 0.78701 0.78413 0.79491 1.20349 1.20771 1.19828
1.22849 0.97578 0.95336 0.82132 1.86192 1.69113 1.55519 1.14905
1.21994 0.77269 0.82000 0.85939 1.90841 1.37289 1.26966 1.88787
1.22486 1.04409 1.03211 0.88012 1.22468 0.93864 0.97459 0.89537
1.19425 0.94890 0.94131 0.93165 1.21799 0.96160 0.94495 0.99194
1.21189 0.97006 1.00098 0.89111 1.21561 1.08424 1.00535 0.83513
1.43998 0.98366 0.99897 1.03408 1.94526 1.60250 1.66749 1.17565
1.94542 1.35055 1.15643 1.94381 1.21233 0.92655 0.91251 1.02260
1.21727 0.98934 1.00788 0.88798 0.94596 0.91904 0.96170 0.96155
0.91906 0.94602 0.92866 0.93444 0.93432 0.81165 0.83127 0.80784
0.81633 0.81251 0.80019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.50 8.10 71.98 0.58 -4.92 16
2 C 0.06 2.81 0.58 -52.93 -0.03 2.78 16
3 C -0.12 -5.50 8.10 71.98 0.58 -4.91 16
4 C -0.53 -27.92 8.01 25.60 0.21 -27.71 16
5 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16
6 C 0.03 1.40 5.15 84.65 0.44 1.83 16
7 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16
8 Si 0.95 41.87 29.54 68.60 2.03 43.89 16
9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16
10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16
11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16
12 C 0.10 4.01 4.18 71.98 0.30 4.31 16
13 O -0.34 -12.25 8.77 -58.22 -0.51 -12.77 16
14 C 0.48 14.41 7.87 69.90 0.55 14.96 16
15 O -0.55 -19.29 16.00 19.44 0.31 -18.98 16
16 C -0.16 -2.92 9.54 23.59 0.22 -2.70 16
17 C -0.01 -0.19 9.46 23.85 0.23 0.03 16
18 C -0.02 -0.15 5.87 -20.15 -0.12 -0.27 16
19 C -0.10 -0.88 9.41 22.58 0.21 -0.67 16
20 C -0.06 -0.62 9.53 22.23 0.21 -0.41 16
21 C -0.06 -0.83 6.86 36.46 0.25 -0.58 16
22 N 0.03 0.59 4.45 -46.27 -0.21 0.38 16
23 O -0.18 -3.87 18.43 18.88 0.35 -3.53 16
24 O -0.18 -4.18 18.43 18.89 0.35 -3.84 16
25 C -0.06 -0.54 9.54 22.23 0.21 -0.33 16
26 C -0.08 -0.60 9.80 22.58 0.22 -0.38 16
27 H 0.04 1.47 7.68 -2.39 -0.02 1.45 16
28 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16
29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
31 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16
32 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16
33 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16
34 H 0.05 2.04 8.13 -2.39 -0.02 2.02 16
35 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16
36 H 0.17 2.08 6.08 -2.91 -0.02 2.06 16
37 H 0.15 1.95 7.52 -2.91 -0.02 1.92 16
38 H 0.17 0.90 6.17 -2.91 -0.02 0.88 16
39 H 0.17 1.56 7.60 -2.91 -0.02 1.54 16
40 H 0.17 1.21 7.59 -2.91 -0.02 1.19 16
41 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16
Total: -1.00 -65.17 357.42 7.64 -57.53
By element:
Atomic # 1 Polarization: 2.96 SS G_CDS: 1.06 Total: 4.02 kcal
Atomic # 6 Polarization: -23.03 SS G_CDS: 4.07 Total: -18.96 kcal
Atomic # 7 Polarization: -47.36 SS G_CDS: -0.01 Total: -47.37 kcal
Atomic # 8 Polarization: -39.61 SS G_CDS: 0.50 Total: -39.11 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal
Total: -65.17 7.64 -57.53 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184778016.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal
(2) G-P(sol) polarization free energy of solvation -65.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds