Wall clock time and date at job start Tue Mar 31 2020 13:01:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47296 * 2 1
4 4 C 1.50700 * 109.46880 * 239.99648 * 2 1 3
5 5 H 1.07995 * 120.00317 * 240.00036 * 4 2 1
6 6 C 1.37882 * 119.99858 * 60.00272 * 4 2 1
7 7 N 1.31511 * 119.99698 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 119.99983 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46852 * 60.00036 * 8 6 4
10 10 H 1.48497 * 109.46879 * 179.97438 * 8 6 4
11 11 H 1.48494 * 109.47174 * 299.99990 * 8 6 4
12 12 C 1.53005 * 109.46964 * 120.00190 * 2 1 3
13 13 O 1.45201 * 109.47002 * 299.99810 * 12 2 1
14 14 C 1.34746 * 117.00088 * 180.02562 * 13 12 2
15 15 O 1.21506 * 119.99951 * 359.97438 * 14 13 12
16 16 C 1.47474 * 120.00060 * 179.97438 * 14 13 12
17 17 C 1.39774 * 120.06074 * 359.97438 * 16 14 13
18 18 C 1.37824 * 120.10652 * 179.97438 * 17 16 14
19 19 C 1.38719 * 120.08003 * 359.97438 * 18 17 16
20 20 C 1.39700 * 120.10648 * 0.05008 * 19 18 17
21 21 C 1.38065 * 120.12799 * 359.96598 * 20 19 18
22 22 N 1.40275 * 119.23914 * 179.97438 * 20 19 18
23 23 C 1.35086 * 118.96316 * 15.82843 * 22 20 19
24 24 O 1.21290 * 120.14178 * 181.36105 * 23 22 20
25 25 C 1.50748 * 119.72843 * 1.11228 * 23 22 20
26 26 O 1.35832 * 120.50435 * 180.09704 * 19 18 17
27 27 H 1.09004 * 109.46663 * 300.00350 * 1 2 3
28 28 H 1.09002 * 109.47266 * 59.99918 * 1 2 3
29 29 H 1.08999 * 109.47327 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.47012 * 179.97438 * 3 2 1
31 31 H 1.08996 * 109.46944 * 299.99806 * 3 2 1
32 32 H 1.09001 * 109.47080 * 59.99987 * 3 2 1
33 33 H 0.97007 * 120.00040 * 179.97438 * 7 6 4
34 34 H 1.08999 * 109.46497 * 179.97438 * 12 2 1
35 35 H 1.08998 * 109.47181 * 59.99896 * 12 2 1
36 36 H 1.08001 * 119.94933 * 359.96236 * 17 16 14
37 37 H 1.07998 * 119.96147 * 180.02562 * 18 17 16
38 38 H 1.07998 * 120.15357 * 180.02562 * 21 20 19
39 39 H 0.97001 * 120.51515 * 195.54454 * 22 20 19
40 40 H 1.08994 * 109.54539 * 208.88904 * 25 23 22
41 41 H 1.09001 * 109.19400 * 89.04315 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1314
6 6 1.6992 -0.2394 -2.4827
7 7 0.9428 0.8296 -2.6034
8 14 2.3224 -1.1197 -4.0080
9 1 1.8278 -2.5200 -4.0081
10 1 1.8267 -0.4201 -5.2204
11 1 3.8073 -1.1192 -4.0078
12 6 2.0400 -0.7213 1.2493
13 8 1.5560 -0.0368 2.4348
14 6 1.9184 -0.5485 3.6275
15 8 2.6194 -1.5399 3.6755
16 6 1.4644 0.0946 4.8745
17 6 0.6585 1.2354 4.8207
18 6 0.2332 1.8369 5.9856
19 6 0.6035 1.3114 7.2148
20 6 1.4092 0.1717 7.2757
21 6 1.8392 -0.4359 6.1129
22 7 1.7731 -0.3440 8.5284
23 6 1.0932 0.0585 9.6241
24 8 1.4058 -0.3548 10.7207
25 6 -0.0522 1.0278 9.4790
26 8 0.1876 1.8961 8.3681
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 3.1301 1.4424 0.0005
31 1 1.6768 1.9562 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 0.7087 1.1612 -3.4844
34 1 3.1300 -0.7217 1.2490
35 1 1.6766 -1.7490 1.2492
36 1 0.3688 1.6463 3.8649
37 1 -0.3897 2.7180 5.9413
38 1 2.4617 -1.3171 6.1595
39 1 2.4990 -0.9827 8.6061
40 1 -0.1459 1.6204 10.3889
41 1 -0.9741 0.4707 9.3121
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000184814628.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:52
Heat of formation + Delta-G solvation = -130.764382 kcal
Electronic energy + Delta-G solvation = -26116.956983 eV
Core-core repulsion = 22155.389226 eV
Total energy + Delta-G solvation = -3961.567757 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.87851 -40.13027 -39.10424 -37.83546 -36.55463 -35.56240 -34.88548 -31.47293
-31.13282 -30.30612 -28.45911 -26.00513 -25.65759 -25.24726 -24.41321 -23.27233
-21.88559 -19.86479 -19.33095 -18.92757 -18.50076 -17.57333 -16.80622 -16.57820
-16.18463 -15.86526 -15.78996 -15.47814 -15.02798 -14.77904 -14.68560 -14.30403
-13.74654 -13.67606 -13.19613 -13.08920 -12.96330 -12.76859 -11.98530 -11.79785
-11.58855 -11.53863 -11.22281 -11.17697 -10.98028 -10.77018 -10.58927 -10.45181
-10.35699 -10.16903 -9.95384 -9.46208 -9.37043 -9.13716 -8.80650 -8.42479
-8.40354 -6.05223 -4.16906 0.33275 0.75018 1.76585 2.24446 2.55381
2.77386 3.07407 3.27472 3.32156 3.35828 3.46359 3.52517 4.16676
4.35369 4.41173 4.57969 4.75750 4.78582 4.85305 5.07879 5.21387
5.32442 5.52889 5.71632 5.98934 6.01254 6.03747 6.05255 6.15723
6.31596 6.42190 6.68869 6.77270 6.94182 6.96074 7.09297 7.09782
7.29509 7.35849 7.58377 7.66860 8.01722 8.06426 8.16348 8.35338
8.82713 9.48782 10.95940
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.036811 B = 0.002439 C = 0.002329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 760.467494 B =11475.947192 C =12016.925209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.071 3.929
3 C -0.130 4.130
4 C -0.514 4.514
5 H 0.056 0.944
6 C 0.069 3.931
7 N -0.882 5.882
8 Si 0.896 3.104
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.277 1.277
12 C 0.085 3.915
13 O -0.341 6.341
14 C 0.501 3.499
15 O -0.515 6.515
16 C -0.108 4.108
17 C -0.045 4.045
18 C -0.119 4.119
19 C 0.106 3.894
20 C 0.075 3.925
21 C -0.060 4.060
22 N -0.657 5.657
23 C 0.491 3.509
24 O -0.513 6.513
25 C 0.050 3.950
26 O -0.298 6.298
27 H 0.017 0.983
28 H 0.084 0.916
29 H 0.023 0.977
30 H 0.023 0.977
31 H 0.084 0.916
32 H 0.017 0.983
33 H 0.262 0.738
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.157 0.843
37 H 0.150 0.850
38 H 0.148 0.852
39 H 0.418 0.582
40 H 0.148 0.852
41 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.554 2.968 19.847 20.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.071 3.929
3 C -0.188 4.188
4 C -0.552 4.552
5 H 0.075 0.925
6 C -0.133 4.133
7 N -0.520 5.520
8 Si 0.723 3.277
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.202 1.202
12 C 0.012 3.988
13 O -0.256 6.256
14 C 0.345 3.655
15 O -0.406 6.406
16 C -0.110 4.110
17 C -0.064 4.064
18 C -0.138 4.138
19 C 0.060 3.940
20 C -0.020 4.020
21 C -0.081 4.081
22 N -0.305 5.305
23 C 0.278 3.722
24 O -0.387 6.387
25 C -0.028 4.028
26 O -0.212 6.212
27 H 0.036 0.964
28 H 0.103 0.897
29 H 0.042 0.958
30 H 0.042 0.958
31 H 0.103 0.897
32 H 0.036 0.964
33 H 0.072 0.928
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.175 0.825
37 H 0.168 0.832
38 H 0.166 0.834
39 H 0.258 0.742
40 H 0.166 0.834
41 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -3.441 2.886 20.361 20.850
hybrid contribution 0.892 -1.227 -0.827 1.727
sum -2.549 1.660 19.534 19.769
Atomic orbital electron populations
1.21782 0.97275 0.99012 1.00706 1.18246 0.93444 0.93082 0.88163
1.21780 0.98151 0.98143 1.00708 1.20891 1.32118 1.12359 0.89796
0.92547 1.24847 0.94763 0.94902 0.98772 1.69812 1.36197 1.22531
1.23461 0.86601 0.79233 0.79762 0.82074 1.20247 1.21200 1.20238
1.23748 0.98349 0.95877 0.80788 1.86565 1.68923 1.55614 1.14544
1.20876 0.77690 0.81946 0.84948 1.90812 1.35883 1.25433 1.88440
1.19045 1.02928 0.98236 0.90774 1.21497 0.92967 0.92622 0.99276
1.20562 1.02280 1.02542 0.88408 1.18911 0.95871 0.92115 0.87146
1.17758 1.02061 0.96478 0.85720 1.20658 0.99159 0.99449 0.88816
1.43709 1.36099 1.45771 1.04901 1.21530 0.84574 0.82159 0.83908
1.90828 1.66577 1.56537 1.24805 1.23245 0.96138 0.92699 0.90708
1.86236 1.83300 1.33717 1.17954 0.96422 0.89695 0.95801 0.95792
0.89700 0.96412 0.92810 0.92339 0.92349 0.82541 0.83223 0.83410
0.74182 0.83433 0.87935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.99 8.11 37.16 0.30 -2.68 16
2 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16
3 C -0.13 -2.99 8.11 37.16 0.30 -2.69 16
4 C -0.51 -13.34 8.01 -34.44 -0.28 -13.61 16
5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16
6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16
7 N -0.88 -23.34 9.35 55.43 0.52 -22.82 16
8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16
9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16
11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
12 C 0.08 1.80 4.27 37.16 0.16 1.95 16
13 O -0.34 -6.31 8.11 -40.62 -0.33 -6.64 16
14 C 0.50 8.38 7.89 34.49 0.27 8.65 16
15 O -0.51 -9.78 16.13 -19.27 -0.31 -10.09 16
16 C -0.11 -1.37 5.88 -104.96 -0.62 -1.99 16
17 C -0.04 -0.48 9.60 -39.16 -0.38 -0.85 16
18 C -0.12 -1.05 9.98 -39.56 -0.39 -1.45 16
19 C 0.11 1.00 6.45 -38.86 -0.25 0.75 16
20 C 0.07 0.72 6.54 -83.51 -0.55 0.18 16
21 C -0.06 -0.65 9.49 -39.05 -0.37 -1.02 16
22 N -0.66 -5.76 5.47 -9.68 -0.05 -5.81 16
23 C 0.49 4.54 7.94 -10.82 -0.09 4.45 16
24 O -0.51 -6.27 17.95 5.55 0.10 -6.17 16
25 C 0.05 0.32 7.16 36.03 0.26 0.58 16
26 O -0.30 -2.51 10.44 -19.21 -0.20 -2.71 16
27 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16
28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
32 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16
33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16
34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16
36 H 0.16 1.64 7.59 -52.49 -0.40 1.24 16
37 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16
38 H 0.15 1.53 7.65 -52.49 -0.40 1.13 16
39 H 0.42 3.10 8.89 -40.82 -0.36 2.74 16
40 H 0.15 0.62 8.14 -51.93 -0.42 0.19 16
41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
LS Contribution 348.05 15.07 5.25 5.25
Total: -1.00 -30.32 348.05 -6.95 -37.27
By element:
Atomic # 1 Polarization: 5.89 SS G_CDS: -5.09 Total: 0.80 kcal
Atomic # 6 Polarization: -2.66 SS G_CDS: -1.81 Total: -4.47 kcal
Atomic # 7 Polarization: -29.10 SS G_CDS: 0.47 Total: -28.63 kcal
Atomic # 8 Polarization: -24.87 SS G_CDS: -0.74 Total: -25.61 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -30.32 -6.95 -37.27 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184814628.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.496 kcal
(2) G-P(sol) polarization free energy of solvation -30.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds