Wall clock time and date at job start Tue Mar 31 2020 12:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50704 * 109.46893 * 2 1 4 4 N 1.30842 * 125.88538 * 270.21188 * 3 2 1 5 5 N 1.40080 * 108.23235 * 180.25692 * 4 3 2 6 6 C 1.46496 * 126.03603 * 179.75204 * 5 4 3 7 7 C 1.34984 * 107.93147 * 359.71805 * 5 4 3 8 8 Cl 1.73594 * 126.14485 * 179.97438 * 7 5 4 9 9 C 1.35464 * 107.71393 * 0.02562 * 7 5 4 10 10 C 1.50702 * 126.05243 * 180.02562 * 9 7 5 11 11 N 1.46502 * 109.47369 * 90.01358 * 10 9 7 12 12 C 1.38851 * 119.99852 * 180.02562 * 11 10 9 13 13 C 1.39569 * 119.84086 * 180.02562 * 12 11 10 14 14 C 1.36334 * 120.16297 * 180.25875 * 13 12 11 15 15 C 1.40889 * 119.83655 * 359.49369 * 14 13 12 16 16 C 1.41135 * 120.15862 * 180.25515 * 15 14 13 17 17 H 1.07999 * 120.00089 * 204.74690 * 16 15 14 18 18 C 1.39863 * 120.00243 * 24.74620 * 16 15 14 19 19 N 1.30909 * 119.99664 * 17.83501 * 18 16 15 20 20 Si 1.86802 * 120.00327 * 197.83849 * 18 16 15 21 21 H 1.48502 * 109.46990 * 60.00094 * 20 18 16 22 22 H 1.48499 * 109.46887 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47107 * 299.99842 * 20 18 16 24 24 C 1.40894 * 119.68764 * 0.48101 * 15 14 13 25 25 C 1.36337 * 119.82988 * 359.77221 * 24 15 14 26 26 H 1.08997 * 109.47001 * 300.00498 * 1 2 3 27 27 H 1.08999 * 109.46750 * 60.00285 * 1 2 3 28 28 H 1.08994 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47240 * 239.99932 * 2 1 3 30 30 H 1.08996 * 109.46956 * 119.99223 * 2 1 3 31 31 H 1.09004 * 109.47642 * 269.96519 * 6 5 4 32 32 H 1.08998 * 109.47184 * 29.96073 * 6 5 4 33 33 H 1.09005 * 109.47395 * 149.96165 * 6 5 4 34 34 H 1.09001 * 109.46890 * 330.01733 * 10 9 7 35 35 H 1.08997 * 109.46877 * 210.01968 * 10 9 7 36 36 H 0.97005 * 119.99968 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.91969 * 359.97438 * 13 12 11 38 38 H 1.08005 * 120.08631 * 179.74088 * 14 13 12 39 39 H 0.97003 * 119.99503 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.08210 * 179.75397 * 24 15 14 41 41 H 1.08012 * 119.91223 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2843 2.1453 -1.0601 5 7 2.7363 3.4013 -0.6353 6 6 3.1334 4.5129 -1.5028 7 6 2.7406 3.4067 0.7145 8 17 3.2184 4.7299 1.7316 9 6 2.3062 2.1938 1.1330 10 6 2.1501 1.7535 2.5658 11 7 0.7993 2.0767 3.0317 12 6 0.4193 1.7639 4.3300 13 6 -0.8686 2.0729 4.7703 14 6 -1.2469 1.7734 6.0454 15 6 -0.3376 1.1409 6.9161 16 6 -0.7238 0.8230 8.2358 17 1 0.0245 0.7213 9.0078 18 6 -2.0757 0.6396 8.5439 19 7 -2.9404 0.4145 7.5871 20 14 -2.6476 0.7158 10.3206 21 1 -2.3287 2.0513 10.8863 22 1 -4.1144 0.4916 10.3785 23 1 -1.9543 -0.3343 11.1092 24 6 0.9607 0.8315 6.4647 25 6 1.3268 1.1416 5.1885 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.1993 4.4418 -1.7198 32 1 2.5693 4.4664 -2.4343 33 1 2.9273 5.4579 -1.0000 34 1 2.8819 2.2705 3.1865 35 1 2.3105 0.6776 2.6347 36 1 0.1703 2.5093 2.4331 37 1 -1.5657 2.5545 4.1006 38 1 -2.2424 2.0169 6.3861 39 1 -3.8779 0.2870 7.8008 40 1 1.6641 0.3503 7.1279 41 1 2.3219 0.9054 4.8411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185156512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:52 Heat of formation + Delta-G solvation = 87.519891 kcal Electronic energy + Delta-G solvation = -23575.129912 eV Core-core repulsion = 20096.029587 eV Total energy + Delta-G solvation = -3479.100325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59131 -37.87216 -37.05953 -35.54359 -34.49916 -32.98454 -31.93810 -30.62588 -29.42178 -28.45391 -27.23934 -25.22269 -23.78350 -23.40002 -21.27465 -20.59021 -20.14329 -19.54827 -17.27742 -17.01896 -16.17166 -15.79470 -15.31828 -15.23752 -14.62501 -14.35549 -13.78631 -13.70208 -13.58574 -13.21989 -13.06671 -12.79626 -12.61231 -12.54958 -12.27945 -11.89681 -11.82722 -11.65712 -11.60982 -11.38830 -11.26845 -11.06019 -10.95931 -10.80046 -10.56678 -10.39086 -9.65620 -9.33626 -9.24092 -9.16293 -8.63809 -8.45947 -7.41616 -6.58506 -6.30743 -3.97103 1.28111 1.40783 2.37784 2.39444 2.97946 3.16484 3.18057 3.20953 3.42256 4.09618 4.10474 4.61404 4.66420 4.79428 4.82209 4.91160 5.04124 5.06152 5.22881 5.32980 5.43735 5.58666 5.87311 5.88987 5.99563 6.01068 6.17079 6.25866 6.34672 6.36814 6.42889 6.47785 6.92731 7.13664 7.27364 7.37283 7.37548 7.67010 7.73403 7.87123 8.21342 8.41297 8.57117 8.75658 8.87782 9.12156 9.22292 10.42946 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.002870 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.272090 B = 9752.977372 C =10472.977613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.103 3.897 4 N -0.277 5.277 5 N -0.371 5.371 6 C 0.098 3.902 7 C 0.135 3.865 8 Cl 0.002 6.998 9 C -0.217 4.217 10 C 0.216 3.784 11 N -0.753 5.753 12 C 0.099 3.901 13 C -0.163 4.163 14 C -0.122 4.122 15 C 0.074 3.926 16 C -0.468 4.468 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.809 5.809 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.188 4.188 25 C -0.160 4.160 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.383 0.617 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.276 0.724 40 H 0.089 0.911 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 5.592 -16.595 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.063 4.063 4 N -0.100 5.100 5 N -0.155 5.155 6 C -0.043 4.043 7 C -0.019 4.019 8 Cl 0.030 6.970 9 C -0.230 4.230 10 C 0.090 3.910 11 N -0.389 5.389 12 C 0.001 3.999 13 C -0.185 4.185 14 C -0.142 4.142 15 C 0.071 3.929 16 C -0.499 4.499 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.436 5.436 20 Si 0.727 3.273 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.208 4.208 25 C -0.183 4.183 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.216 0.784 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.395 5.768 -17.880 21.006 hybrid contribution -0.428 0.500 1.405 1.551 sum 8.968 6.268 -16.475 19.777 Atomic orbital electron populations 1.21711 0.93632 1.02403 1.02626 1.20023 0.96732 0.87900 1.03589 1.22220 0.97390 0.97251 0.89430 1.77489 1.21277 0.89560 1.21672 1.48500 1.51919 1.12300 1.02755 1.21927 1.01587 0.85849 0.94943 1.21553 1.04275 0.92248 0.83784 1.98424 1.90033 1.44510 1.63995 1.19818 1.12983 0.92543 0.97619 1.19169 0.86575 0.98890 0.86366 1.43891 1.12297 1.71071 1.11642 1.17320 0.93935 1.03989 0.84607 1.20018 0.94065 1.07175 0.97281 1.20905 1.00477 1.00056 0.92736 1.17473 0.90928 0.91116 0.93384 1.19325 0.92058 1.43489 0.95061 0.91082 1.25777 0.96833 0.92691 0.98691 1.69853 1.03853 1.36021 1.33901 0.86487 0.77663 0.79681 0.83475 1.19159 1.20647 1.19312 1.20549 0.98103 1.07161 0.94986 1.19844 0.97279 1.06208 0.94921 0.91436 0.92879 0.91756 0.90409 0.89278 0.90355 0.88734 0.89358 0.92788 0.92405 0.78416 0.89706 0.86472 0.91358 0.89228 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.90 37.16 0.37 -1.27 16 2 C -0.04 -0.48 6.31 -27.88 -0.18 -0.66 16 3 C 0.10 1.35 6.47 -82.41 -0.53 0.81 16 4 N -0.28 -3.66 12.57 33.67 0.42 -3.24 16 5 N -0.37 -4.32 4.01 -64.91 -0.26 -4.58 16 6 C 0.10 0.70 11.31 59.84 0.68 1.38 16 7 C 0.14 1.71 7.45 -17.16 -0.13 1.58 16 8 Cl 0.00 0.03 28.34 -51.86 -1.47 -1.44 16 9 C -0.22 -2.95 5.47 -105.01 -0.57 -3.53 16 10 C 0.22 3.25 5.01 -5.19 -0.03 3.23 16 11 N -0.75 -13.05 5.69 -59.67 -0.34 -13.39 16 12 C 0.10 2.11 6.67 -83.69 -0.56 1.56 16 13 C -0.16 -3.81 9.82 -39.77 -0.39 -4.20 16 14 C -0.12 -3.19 8.64 -39.26 -0.34 -3.53 16 15 C 0.07 2.00 5.57 -106.79 -0.60 1.41 16 16 C -0.47 -12.80 9.03 -37.88 -0.34 -13.14 16 17 H 0.07 1.88 7.91 -52.49 -0.41 1.46 16 18 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 19 N -0.81 -21.60 10.96 55.54 0.61 -20.99 16 20 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.19 -4.65 9.74 -39.26 -0.38 -5.03 16 25 C -0.16 -3.57 9.23 -39.77 -0.37 -3.94 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.97 7.25 -51.93 -0.38 0.59 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.52 7.81 -51.93 -0.41 0.11 16 34 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 35 H 0.06 0.87 7.03 -51.93 -0.37 0.50 16 36 H 0.38 6.39 8.46 -40.82 -0.35 6.04 16 37 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.09 1.73 6.68 -52.48 -0.35 1.38 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -29.55 360.50 -9.59 -39.14 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.50 Total: 8.16 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -3.46 Total: -23.47 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.43 Total: -42.20 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.47 Total: -1.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.55 -9.59 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185156512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.664 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds