Wall clock time and date at job start Tue Mar 31 2020 12:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50704 * 109.46893 * 2 1 4 4 N 1.30842 * 125.88538 * 270.21188 * 3 2 1 5 5 N 1.40080 * 108.23235 * 180.25692 * 4 3 2 6 6 C 1.46496 * 126.03603 * 179.75204 * 5 4 3 7 7 C 1.34984 * 107.93147 * 359.71805 * 5 4 3 8 8 Cl 1.73594 * 126.14485 * 179.97438 * 7 5 4 9 9 C 1.35464 * 107.71393 * 0.02562 * 7 5 4 10 10 C 1.50702 * 126.05243 * 180.02562 * 9 7 5 11 11 N 1.46502 * 109.47369 * 90.01358 * 10 9 7 12 12 C 1.38851 * 119.99852 * 180.02562 * 11 10 9 13 13 C 1.39569 * 119.84086 * 180.02562 * 12 11 10 14 14 C 1.36334 * 120.16297 * 180.25875 * 13 12 11 15 15 C 1.40889 * 119.83655 * 359.49369 * 14 13 12 16 16 C 1.41135 * 120.15862 * 180.25515 * 15 14 13 17 17 H 1.07999 * 120.00089 * 204.74690 * 16 15 14 18 18 C 1.39863 * 120.00243 * 24.74620 * 16 15 14 19 19 N 1.30909 * 119.99664 * 17.83501 * 18 16 15 20 20 Si 1.86802 * 120.00327 * 197.83849 * 18 16 15 21 21 H 1.48502 * 109.46990 * 60.00094 * 20 18 16 22 22 H 1.48499 * 109.46887 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47107 * 299.99842 * 20 18 16 24 24 C 1.40894 * 119.68764 * 0.48101 * 15 14 13 25 25 C 1.36337 * 119.82988 * 359.77221 * 24 15 14 26 26 H 1.08997 * 109.47001 * 300.00498 * 1 2 3 27 27 H 1.08999 * 109.46750 * 60.00285 * 1 2 3 28 28 H 1.08994 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47240 * 239.99932 * 2 1 3 30 30 H 1.08996 * 109.46956 * 119.99223 * 2 1 3 31 31 H 1.09004 * 109.47642 * 269.96519 * 6 5 4 32 32 H 1.08998 * 109.47184 * 29.96073 * 6 5 4 33 33 H 1.09005 * 109.47395 * 149.96165 * 6 5 4 34 34 H 1.09001 * 109.46890 * 330.01733 * 10 9 7 35 35 H 1.08997 * 109.46877 * 210.01968 * 10 9 7 36 36 H 0.97005 * 119.99968 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.91969 * 359.97438 * 13 12 11 38 38 H 1.08005 * 120.08631 * 179.74088 * 14 13 12 39 39 H 0.97003 * 119.99503 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.08210 * 179.75397 * 24 15 14 41 41 H 1.08012 * 119.91223 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2843 2.1453 -1.0601 5 7 2.7363 3.4013 -0.6353 6 6 3.1334 4.5129 -1.5028 7 6 2.7406 3.4067 0.7145 8 17 3.2184 4.7299 1.7316 9 6 2.3062 2.1938 1.1330 10 6 2.1501 1.7535 2.5658 11 7 0.7993 2.0767 3.0317 12 6 0.4193 1.7639 4.3300 13 6 -0.8686 2.0729 4.7703 14 6 -1.2469 1.7734 6.0454 15 6 -0.3376 1.1409 6.9161 16 6 -0.7238 0.8230 8.2358 17 1 0.0245 0.7213 9.0078 18 6 -2.0757 0.6396 8.5439 19 7 -2.9404 0.4145 7.5871 20 14 -2.6476 0.7158 10.3206 21 1 -2.3287 2.0513 10.8863 22 1 -4.1144 0.4916 10.3785 23 1 -1.9543 -0.3343 11.1092 24 6 0.9607 0.8315 6.4647 25 6 1.3268 1.1416 5.1885 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.1993 4.4418 -1.7198 32 1 2.5693 4.4664 -2.4343 33 1 2.9273 5.4579 -1.0000 34 1 2.8819 2.2705 3.1865 35 1 2.3105 0.6776 2.6347 36 1 0.1703 2.5093 2.4331 37 1 -1.5657 2.5545 4.1006 38 1 -2.2424 2.0169 6.3861 39 1 -3.8779 0.2870 7.8008 40 1 1.6641 0.3503 7.1279 41 1 2.3219 0.9054 4.8411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185156512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:51 Heat of formation + Delta-G solvation = 71.951702 kcal Electronic energy + Delta-G solvation = -23575.804999 eV Core-core repulsion = 20096.029587 eV Total energy + Delta-G solvation = -3479.775412 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54169 -39.66127 -37.99792 -36.94451 -35.69843 -34.66650 -32.86702 -31.94801 -31.19543 -30.07627 -28.29513 -26.58505 -25.36406 -24.33880 -22.79656 -22.04096 -21.71614 -20.59890 -19.06057 -18.17523 -17.54097 -17.01342 -16.86128 -16.28888 -16.07887 -15.58641 -15.30162 -14.75218 -14.63507 -14.42618 -14.32819 -14.13109 -13.92847 -13.70926 -13.58540 -13.47391 -13.18477 -13.03577 -12.71546 -12.68394 -12.56985 -12.48007 -12.33555 -12.24216 -12.05303 -11.53122 -11.50845 -11.13017 -11.01235 -10.24589 -10.23210 -9.63685 -9.32175 -8.49913 -8.08317 -5.94508 0.33949 0.45227 1.17087 1.26511 1.36460 1.42257 1.52826 1.59082 1.64388 2.30494 2.90104 3.13630 3.28337 3.83131 3.91055 4.00062 4.17345 4.21064 4.30045 4.44680 4.52441 4.52934 4.56850 4.57295 4.68973 4.77078 4.97610 5.07398 5.08374 5.16274 5.24603 5.31603 5.38639 5.46389 5.48216 5.62874 5.80937 5.83235 5.99547 6.25073 6.42787 6.48531 6.74580 6.95032 7.14519 7.18079 7.36692 8.53043 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.002870 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.272090 B = 9752.977372 C =10472.977613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.099 3.901 4 N -0.292 5.292 5 N -0.366 5.366 6 C 0.086 3.914 7 C 0.136 3.864 8 Cl 0.011 6.989 9 C -0.235 4.235 10 C 0.219 3.781 11 N -0.741 5.741 12 C 0.124 3.876 13 C -0.175 4.175 14 C -0.140 4.140 15 C 0.035 3.965 16 C -0.507 4.507 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.842 5.842 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.262 1.262 24 C -0.195 4.195 25 C -0.165 4.165 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.389 0.611 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.281 0.719 40 H 0.094 0.906 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 6.104 -17.971 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.067 4.067 4 N -0.116 5.116 5 N -0.150 5.150 6 C -0.053 4.053 7 C -0.020 4.020 8 Cl 0.039 6.961 9 C -0.248 4.248 10 C 0.094 3.906 11 N -0.375 5.375 12 C 0.024 3.976 13 C -0.197 4.197 14 C -0.160 4.160 15 C 0.032 3.968 16 C -0.538 4.538 17 H 0.084 0.916 18 C -0.179 4.179 19 N -0.470 5.470 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.187 1.187 24 C -0.215 4.215 25 C -0.187 4.187 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.223 0.777 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.446 6.296 -19.317 22.845 hybrid contribution -0.602 0.431 1.589 1.753 sum 9.844 6.727 -17.728 21.364 Atomic orbital electron populations 1.21655 0.93829 1.02838 1.01533 1.20081 0.96427 0.87253 1.04416 1.22438 0.97199 0.97876 0.89142 1.77459 1.21851 0.90318 1.21952 1.48849 1.50702 1.12585 1.02845 1.22322 1.02939 0.85031 0.95017 1.21633 1.03629 0.92231 0.84475 1.98431 1.89890 1.43957 1.63785 1.19665 1.14899 0.93414 0.96862 1.19177 0.84789 0.99162 0.87446 1.43944 1.13554 1.70000 1.10023 1.17364 0.92895 1.01404 0.85935 1.20178 0.95369 1.07496 0.96645 1.20823 0.99785 1.01318 0.94076 1.17781 0.92278 0.92730 0.94034 1.19555 0.93071 1.45711 0.95501 0.91559 1.26572 0.96451 0.91831 1.03091 1.69920 1.04261 1.36885 1.35974 0.85388 0.77506 0.79671 0.77874 1.18899 1.19561 1.18675 1.20747 0.97481 1.07048 0.96214 1.20084 0.98696 1.05844 0.94077 0.93538 0.92833 0.90603 0.88920 0.89110 0.88551 0.87484 0.87957 0.92828 0.91947 0.77734 0.87988 0.88477 0.90880 0.88740 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.90 71.99 0.71 -2.24 16 2 C -0.04 -0.87 6.31 29.85 0.19 -0.68 16 3 C 0.10 2.40 6.47 43.10 0.28 2.67 16 4 N -0.29 -7.11 12.57 -47.39 -0.60 -7.71 16 5 N -0.37 -7.66 4.01 -359.27 -1.44 -9.10 16 6 C 0.09 1.00 11.31 127.77 1.44 2.44 16 7 C 0.14 3.14 7.45 83.57 0.62 3.76 16 8 Cl 0.01 0.24 28.34 -2.72 -0.08 0.16 16 9 C -0.24 -5.95 5.47 -20.11 -0.11 -6.06 16 10 C 0.22 6.15 5.01 85.63 0.43 6.58 16 11 N -0.74 -24.34 5.69 -342.71 -1.95 -26.29 16 12 C 0.12 5.16 6.67 38.67 0.26 5.42 16 13 C -0.17 -8.15 9.82 22.15 0.22 -7.93 16 14 C -0.14 -7.56 8.64 22.47 0.19 -7.37 16 15 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 16 C -0.51 -28.71 9.03 23.37 0.21 -28.50 16 17 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 18 C 0.03 1.71 5.13 85.22 0.44 2.15 16 19 N -0.84 -46.35 10.96 21.82 0.24 -46.12 16 20 Si 0.97 40.55 29.60 68.60 2.03 42.58 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 C -0.19 -9.74 9.74 22.48 0.22 -9.52 16 25 C -0.16 -7.15 9.23 22.15 0.20 -6.95 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.81 7.25 -2.39 -0.02 1.79 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 0.91 7.81 -2.38 -0.02 0.89 16 34 H 0.05 1.54 7.69 -2.39 -0.02 1.52 16 35 H 0.06 1.73 7.03 -2.39 -0.02 1.71 16 36 H 0.39 12.26 8.46 -92.70 -0.78 11.47 16 37 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.10 5.55 6.17 -2.91 -0.02 5.54 16 39 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 40 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.12 4.32 6.68 -2.90 -0.02 4.30 16 Total: -1.00 -64.57 360.50 3.66 -60.90 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.27 Total: 29.99 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 5.19 Total: -44.41 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -3.75 Total: -89.22 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -64.57 3.66 -60.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185156512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.856 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds