Wall clock time and date at job start Tue Mar 31 2020 13:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47360 * 2 1 4 4 H 1.08996 * 109.47369 * 305.00384 * 3 2 1 5 5 C 1.50701 * 109.47395 * 184.99576 * 3 2 1 6 6 H 1.07998 * 120.00091 * 240.00138 * 5 3 2 7 7 C 1.37872 * 119.99860 * 60.00214 * 5 3 2 8 8 N 1.31520 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46728 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47633 * 119.99743 * 9 7 5 12 12 H 1.48508 * 109.47011 * 239.99973 * 9 7 5 13 13 O 1.45201 * 109.47084 * 64.99760 * 3 2 1 14 14 C 1.34750 * 117.00009 * 270.00249 * 13 3 2 15 15 O 1.21504 * 120.00338 * 359.97438 * 14 13 3 16 16 C 1.47453 * 119.99913 * 179.97438 * 14 13 3 17 17 C 1.39822 * 120.08074 * 0.30904 * 16 14 13 18 18 C 1.37634 * 119.91866 * 180.25387 * 17 16 14 19 19 C 1.39154 * 120.08030 * 359.45661 * 18 17 16 20 20 N 1.39412 * 119.91939 * 180.27685 * 19 18 17 21 21 C 1.47091 * 125.55888 * 173.94432 * 20 19 18 22 22 C 1.54098 * 103.77714 * 179.87130 * 21 20 19 23 23 O 1.45698 * 104.00543 * 0.37136 * 22 21 20 24 24 C 1.33767 * 109.48108 * 359.75673 * 23 22 21 25 25 O 1.21500 * 123.07768 * 180.02562 * 24 23 22 26 26 C 1.39146 * 120.15692 * 0.25144 * 19 18 17 27 27 C 1.37631 * 120.08266 * 0.02562 * 26 19 18 28 28 H 1.08994 * 109.47087 * 300.00074 * 1 2 3 29 29 H 1.09000 * 109.46693 * 60.00012 * 1 2 3 30 30 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47303 * 239.99806 * 2 1 3 32 32 H 1.09000 * 109.46693 * 119.99987 * 2 1 3 33 33 H 0.97001 * 119.99988 * 180.02562 * 8 7 5 34 34 H 1.07994 * 120.03805 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.96033 * 179.73346 * 18 17 16 36 36 H 1.08999 * 110.56472 * 298.56854 * 21 20 19 37 37 H 1.08997 * 110.56783 * 61.42789 * 21 20 19 38 38 H 1.09002 * 110.72544 * 241.64237 * 22 21 20 39 39 H 1.08997 * 110.43270 * 118.96379 * 22 21 20 40 40 H 1.08007 * 119.95668 * 180.02562 * 26 19 18 41 41 H 1.07999 * 120.04196 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8783 -1.2278 8 7 3.4063 0.3365 -2.1727 9 14 6.0051 0.8799 -1.3810 10 1 6.5988 1.5451 -0.1934 11 1 6.4963 -0.5191 -1.4625 12 1 6.4001 1.6156 -2.6090 13 8 1.6559 2.0916 1.2407 14 6 0.4682 2.7278 1.2560 15 8 -0.2273 2.7402 0.2597 16 6 0.0124 3.4090 2.4817 17 6 0.8143 3.4013 3.6272 18 6 0.3832 4.0338 4.7711 19 6 -0.8438 4.6899 4.7852 20 7 -1.2745 5.3343 5.9440 21 6 -2.4814 6.1669 6.0615 22 6 -2.4748 6.6167 7.5354 23 8 -1.2726 6.0044 8.0855 24 6 -0.6534 5.3010 7.1310 25 8 0.3776 4.6875 7.3227 26 6 -1.6417 4.7048 3.6453 27 6 -1.2197 4.0697 2.4995 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8295 -0.0619 -2.9494 34 1 1.7689 2.8966 3.6154 35 1 1.0002 4.0246 5.6576 36 1 -2.4189 7.0279 5.3961 37 1 -3.3741 5.5796 5.8465 38 1 -3.3612 6.2516 8.0541 39 1 -2.4149 7.7030 7.6014 40 1 -2.5933 5.2154 3.6597 41 1 -1.8393 4.0820 1.6150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188078012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:54 Heat of formation + Delta-G solvation = -122.263467 kcal Electronic energy + Delta-G solvation = -26240.563495 eV Core-core repulsion = 22279.364366 eV Total energy + Delta-G solvation = -3961.199129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35183 -39.93442 -38.78358 -37.69640 -36.06370 -35.48249 -33.48191 -31.47939 -31.25494 -30.99382 -29.56894 -27.27578 -25.04279 -24.65339 -23.16143 -22.18210 -21.84936 -20.69057 -19.54400 -18.52375 -17.96706 -17.52935 -17.38798 -16.58028 -16.09617 -15.45352 -15.22106 -15.17415 -14.71766 -14.59115 -14.49943 -14.35076 -14.16474 -13.60399 -13.22712 -12.93289 -12.83632 -12.80702 -12.52524 -12.00827 -11.56235 -11.43637 -11.30973 -11.26914 -11.15451 -10.95594 -10.63525 -10.61422 -10.47749 -10.25365 -9.78506 -9.63056 -9.34834 -9.10910 -8.77749 -8.44435 -8.25749 -6.16857 -4.23550 0.73464 1.31353 1.80356 2.23751 2.85087 3.08324 3.25273 3.32175 3.37041 3.48198 3.67608 3.94514 4.02118 4.08476 4.35496 4.59229 4.65946 4.74791 4.83107 5.02702 5.15250 5.20046 5.34383 5.36779 5.54641 5.98395 6.09909 6.11435 6.25562 6.30355 6.34278 6.44993 6.51202 6.77440 6.87785 6.90476 6.99072 7.19349 7.26766 7.49216 7.63827 7.75910 7.95924 8.17594 8.64743 8.90973 9.41639 10.90007 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.002723 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.938688 B =10280.145512 C =11042.208549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.350 6.350 14 C 0.497 3.503 15 O -0.515 6.515 16 C -0.134 4.134 17 C -0.030 4.030 18 C -0.167 4.167 19 C 0.199 3.801 20 N -0.568 5.568 21 C 0.057 3.943 22 C 0.042 3.958 23 O -0.320 6.320 24 C 0.644 3.356 25 O -0.494 6.494 26 C -0.169 4.169 27 C -0.031 4.031 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 12.542 16.402 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.266 6.266 14 C 0.342 3.658 15 O -0.407 6.407 16 C -0.136 4.136 17 C -0.048 4.048 18 C -0.186 4.186 19 C 0.106 3.894 20 N -0.305 5.305 21 C -0.065 4.065 22 C -0.033 4.033 23 O -0.230 6.230 24 C 0.398 3.602 25 O -0.377 6.377 26 C -0.190 4.190 27 C -0.050 4.050 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.178 0.822 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.738 12.168 16.343 25.146 hybrid contribution 0.580 0.019 -0.395 0.702 sum -14.157 12.187 15.947 24.562 Atomic orbital electron populations 1.21860 0.98390 0.98997 1.00763 1.22021 0.92647 0.99325 1.03391 1.20705 0.95042 0.88769 0.78551 0.93437 1.21083 0.89649 1.38797 1.06222 0.91231 1.24883 0.99227 0.94787 0.95081 1.69903 1.35273 1.37927 1.09505 0.86237 0.83937 0.77869 0.78218 1.19444 1.20728 1.20795 1.86536 1.33572 1.62363 1.44147 1.20826 0.81047 0.76800 0.87146 1.90772 1.55639 1.58988 1.35280 1.19509 0.96774 1.03609 0.93693 1.21512 0.99230 0.93851 0.90252 1.21547 0.95577 1.00545 1.00977 1.17596 0.94109 0.93989 0.83732 1.45287 1.25954 1.49774 1.09452 1.23029 0.89061 0.96645 0.97801 1.24374 0.86913 1.00421 0.91595 1.87341 1.38423 1.62381 1.34902 1.18463 0.83364 0.79131 0.79198 1.90991 1.21205 1.43918 1.81622 1.20538 1.00603 1.05871 0.91944 1.21038 0.94119 0.92295 0.97554 0.94906 0.92820 0.94834 0.87318 0.93929 0.92466 0.83345 0.82189 0.87809 0.87872 0.86997 0.87021 0.85077 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.16 0.32 -2.85 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.91 2.25 -27.89 -0.06 5.85 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.56 8.90 -34.44 -0.31 -14.87 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.12 11.29 55.43 0.63 -24.49 16 9 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 O -0.35 -8.36 9.05 -40.63 -0.37 -8.73 16 14 C 0.50 10.58 6.34 34.48 0.22 10.80 16 15 O -0.52 -11.90 13.52 -19.27 -0.26 -12.16 16 16 C -0.13 -2.24 5.88 -104.96 -0.62 -2.86 16 17 C -0.03 -0.46 9.60 -39.21 -0.38 -0.83 16 18 C -0.17 -2.32 9.27 -39.46 -0.37 -2.69 16 19 C 0.20 2.33 6.62 -83.74 -0.55 1.78 16 20 N -0.57 -5.38 3.15 -118.27 -0.37 -5.75 16 21 C 0.06 0.22 6.48 -3.15 -0.02 0.20 16 22 C 0.04 0.12 8.23 37.73 0.31 0.44 16 23 O -0.32 -2.88 11.09 -37.82 -0.42 -3.30 16 24 C 0.64 7.53 8.76 53.71 0.47 8.00 16 25 O -0.49 -7.65 14.74 -19.11 -0.28 -7.94 16 26 C -0.17 -1.77 9.47 -39.47 -0.37 -2.15 16 27 C -0.03 -0.42 9.58 -39.21 -0.38 -0.80 16 28 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 29 H 0.05 1.24 7.79 -51.93 -0.40 0.83 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.15 2.32 7.60 -52.49 -0.40 1.92 16 35 H 0.16 2.36 5.26 -52.48 -0.28 2.08 16 36 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.10 0.20 8.11 -51.93 -0.42 -0.22 16 38 H 0.11 0.07 8.14 -51.93 -0.42 -0.36 16 39 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.13 0.89 7.27 -52.48 -0.38 0.51 16 41 H 0.14 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -34.28 344.10 -7.82 -42.10 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.94 Total: 0.84 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.98 Total: -1.91 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.25 Total: -30.25 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.33 Total: -32.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.28 -7.82 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.159 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds