Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47360 * 2 1 4 4 H 1.08996 * 109.47369 * 305.00384 * 3 2 1 5 5 C 1.50701 * 109.47395 * 184.99576 * 3 2 1 6 6 H 1.07998 * 120.00091 * 240.00138 * 5 3 2 7 7 C 1.37872 * 119.99860 * 60.00214 * 5 3 2 8 8 N 1.31520 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46728 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47633 * 119.99743 * 9 7 5 12 12 H 1.48508 * 109.47011 * 239.99973 * 9 7 5 13 13 O 1.45201 * 109.47084 * 64.99760 * 3 2 1 14 14 C 1.34750 * 117.00009 * 270.00249 * 13 3 2 15 15 O 1.21504 * 120.00338 * 359.97438 * 14 13 3 16 16 C 1.47453 * 119.99913 * 179.97438 * 14 13 3 17 17 C 1.39822 * 120.08074 * 0.30904 * 16 14 13 18 18 C 1.37634 * 119.91866 * 180.25387 * 17 16 14 19 19 C 1.39154 * 120.08030 * 359.45661 * 18 17 16 20 20 N 1.39412 * 119.91939 * 180.27685 * 19 18 17 21 21 C 1.47091 * 125.55888 * 173.94432 * 20 19 18 22 22 C 1.54098 * 103.77714 * 179.87130 * 21 20 19 23 23 O 1.45698 * 104.00543 * 0.37136 * 22 21 20 24 24 C 1.33767 * 109.48108 * 359.75673 * 23 22 21 25 25 O 1.21500 * 123.07768 * 180.02562 * 24 23 22 26 26 C 1.39146 * 120.15692 * 0.25144 * 19 18 17 27 27 C 1.37631 * 120.08266 * 0.02562 * 26 19 18 28 28 H 1.08994 * 109.47087 * 300.00074 * 1 2 3 29 29 H 1.09000 * 109.46693 * 60.00012 * 1 2 3 30 30 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47303 * 239.99806 * 2 1 3 32 32 H 1.09000 * 109.46693 * 119.99987 * 2 1 3 33 33 H 0.97001 * 119.99988 * 180.02562 * 8 7 5 34 34 H 1.07994 * 120.03805 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.96033 * 179.73346 * 18 17 16 36 36 H 1.08999 * 110.56472 * 298.56854 * 21 20 19 37 37 H 1.08997 * 110.56783 * 61.42789 * 21 20 19 38 38 H 1.09002 * 110.72544 * 241.64237 * 22 21 20 39 39 H 1.08997 * 110.43270 * 118.96379 * 22 21 20 40 40 H 1.08007 * 119.95668 * 180.02562 * 26 19 18 41 41 H 1.07999 * 120.04196 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8783 -1.2278 8 7 3.4063 0.3365 -2.1727 9 14 6.0051 0.8799 -1.3810 10 1 6.5988 1.5451 -0.1934 11 1 6.4963 -0.5191 -1.4625 12 1 6.4001 1.6156 -2.6090 13 8 1.6559 2.0916 1.2407 14 6 0.4682 2.7278 1.2560 15 8 -0.2273 2.7402 0.2597 16 6 0.0124 3.4090 2.4817 17 6 0.8143 3.4013 3.6272 18 6 0.3832 4.0338 4.7711 19 6 -0.8438 4.6899 4.7852 20 7 -1.2745 5.3343 5.9440 21 6 -2.4814 6.1669 6.0615 22 6 -2.4748 6.6167 7.5354 23 8 -1.2726 6.0044 8.0855 24 6 -0.6534 5.3010 7.1310 25 8 0.3776 4.6875 7.3227 26 6 -1.6417 4.7048 3.6453 27 6 -1.2197 4.0697 2.4995 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8295 -0.0619 -2.9494 34 1 1.7689 2.8966 3.6154 35 1 1.0002 4.0246 5.6576 36 1 -2.4189 7.0279 5.3961 37 1 -3.3741 5.5796 5.8465 38 1 -3.3612 6.2516 8.0541 39 1 -2.4149 7.7030 7.6014 40 1 -2.5933 5.2154 3.6597 41 1 -1.8393 4.0820 1.6150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188078012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -143.388368 kcal Electronic energy + Delta-G solvation = -26241.479540 eV Core-core repulsion = 22279.364366 eV Total energy + Delta-G solvation = -3962.115174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.05539 -41.46761 -39.99527 -38.60097 -37.62466 -36.60125 -35.49253 -33.38648 -32.22525 -31.99782 -30.31691 -29.27605 -26.23397 -25.33354 -24.99986 -23.18452 -23.01272 -22.05071 -21.31522 -19.35735 -19.18648 -18.54730 -18.49616 -18.08171 -17.68376 -17.05574 -16.72284 -16.30449 -15.85750 -15.53543 -15.29766 -15.18760 -15.03889 -14.85299 -14.76851 -14.56409 -14.17830 -13.76563 -13.45933 -13.35361 -13.25196 -13.23598 -13.10004 -12.82771 -12.57817 -12.54687 -12.14172 -11.93535 -11.76410 -11.55739 -11.44568 -11.30534 -11.26307 -10.82048 -10.53292 -10.16074 -9.24295 -8.28044 -6.44393 -0.43757 0.27138 1.07738 1.26976 1.40899 1.41445 1.55233 1.75037 2.02949 2.39446 2.42219 2.73451 3.01463 3.21286 3.34922 3.80460 3.85200 3.95572 4.02410 4.12409 4.29949 4.36699 4.40045 4.41433 4.53480 4.55512 4.66332 4.70992 4.81807 4.93761 5.04391 5.08593 5.14641 5.21827 5.23247 5.31824 5.40651 5.51373 5.66817 5.76678 5.96554 6.11724 6.12298 6.60218 6.65518 6.98659 7.27018 8.79085 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.002723 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.938688 B =10280.145512 C =11042.208549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.274 1.274 13 O -0.361 6.361 14 C 0.493 3.507 15 O -0.541 6.541 16 C -0.163 4.163 17 C -0.035 4.035 18 C -0.179 4.179 19 C 0.214 3.786 20 N -0.566 5.566 21 C 0.049 3.951 22 C 0.037 3.963 23 O -0.334 6.334 24 C 0.640 3.360 25 O -0.546 6.546 26 C -0.142 4.142 27 C -0.025 4.025 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.271 0.729 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.185 0.815 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 14.323 17.772 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.200 1.200 13 O -0.278 6.278 14 C 0.340 3.660 15 O -0.434 6.434 16 C -0.166 4.166 17 C -0.054 4.054 18 C -0.199 4.199 19 C 0.119 3.881 20 N -0.302 5.302 21 C -0.071 4.071 22 C -0.036 4.036 23 O -0.244 6.244 24 C 0.396 3.604 25 O -0.433 6.433 26 C -0.162 4.162 27 C -0.044 4.044 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.202 0.798 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.170 13.992 17.742 28.379 hybrid contribution 1.143 -0.377 -0.674 1.379 sum -16.027 13.615 17.068 27.084 Atomic orbital electron populations 1.21706 0.96171 1.00620 1.00135 1.21869 0.94604 0.98026 1.02281 1.20402 0.94534 0.89330 0.78506 0.97270 1.21345 0.90536 1.39928 1.06871 0.91882 1.25778 1.04176 0.93870 0.94343 1.70014 1.37305 1.37918 1.09872 0.85178 0.77794 0.78357 0.78338 1.19057 1.19578 1.19987 1.86525 1.35499 1.63091 1.42650 1.21638 0.79752 0.76096 0.88543 1.90738 1.55944 1.60074 1.36615 1.19338 0.99016 1.06271 0.91937 1.21324 0.98796 0.94544 0.90733 1.21456 0.97101 1.01539 0.99845 1.17667 0.93020 0.92402 0.84976 1.45407 1.27347 1.49511 1.07889 1.23597 0.87483 0.97185 0.98858 1.24936 0.85567 1.01953 0.91168 1.87323 1.40434 1.62014 1.34637 1.18692 0.82977 0.78767 0.80006 1.90950 1.23628 1.46097 1.82656 1.20898 1.01739 1.04015 0.89582 1.21218 0.92575 0.91526 0.99054 0.94637 0.94256 0.91954 0.89388 0.93805 0.91984 0.84995 0.83353 0.85114 0.84872 0.84122 0.84257 0.79774 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.56 71.98 0.62 -5.22 16 2 C -0.13 -6.75 5.49 30.59 0.17 -6.58 16 3 C 0.23 12.69 2.25 29.85 0.07 12.76 16 4 H 0.01 0.59 7.16 -2.39 -0.02 0.58 16 5 C -0.55 -32.12 8.90 25.60 0.23 -31.89 16 6 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.99 11.29 21.45 0.24 -52.74 16 9 Si 0.98 43.98 29.54 68.60 2.03 46.00 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 O -0.36 -18.31 9.05 -56.61 -0.51 -18.82 16 14 C 0.49 21.96 6.34 70.25 0.45 22.40 16 15 O -0.54 -26.00 13.52 19.82 0.27 -25.73 16 16 C -0.16 -5.59 5.88 -20.08 -0.12 -5.70 16 17 C -0.03 -1.13 9.60 22.51 0.22 -0.92 16 18 C -0.18 -5.06 9.27 22.35 0.21 -4.86 16 19 C 0.21 4.51 6.62 38.37 0.25 4.77 16 20 N -0.57 -8.92 3.15 -759.79 -2.39 -11.31 16 21 C 0.05 0.11 6.48 86.64 0.56 0.67 16 22 C 0.04 0.05 8.23 72.35 0.60 0.64 16 23 O -0.33 -5.22 11.09 -47.27 -0.52 -5.74 16 24 C 0.64 14.11 8.76 129.91 1.14 15.25 16 25 O -0.55 -17.33 14.74 19.69 0.29 -17.04 16 26 C -0.14 -2.41 9.47 22.34 0.21 -2.20 16 27 C -0.02 -0.63 9.58 22.51 0.22 -0.41 16 28 H 0.03 1.55 6.06 -2.39 -0.01 1.54 16 29 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.09 4.95 5.95 -2.39 -0.01 4.93 16 32 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.13 4.55 7.60 -2.91 -0.02 4.53 16 35 H 0.15 4.63 5.26 -2.91 -0.02 4.61 16 36 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.13 -0.41 8.11 -2.39 -0.02 -0.43 16 38 H 0.14 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.19 1.20 7.27 -2.91 -0.02 1.18 16 41 H 0.15 3.57 7.64 -2.91 -0.02 3.55 16 Total: -1.00 -81.23 344.10 5.72 -75.51 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.07 Total: 9.71 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.25 Total: 0.18 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -2.15 Total: -64.06 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -0.48 Total: -67.33 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -81.23 5.72 -75.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.883 kcal (2) G-P(sol) polarization free energy of solvation -81.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds