Wall clock time and date at job start Tue Mar 31 2020 12:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 C 1.53011 * 109.46761 * 240.00582 * 2 1 3 5 5 C 1.53004 * 109.46817 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.46739 * 180.02562 * 5 4 2 7 7 O 1.20826 * 120.00382 * 359.97438 * 6 5 4 8 8 O 1.34230 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.47449 * 120.00710 * 2 1 3 10 10 S 1.65599 * 120.00031 * 308.78214 * 9 2 1 11 11 O 1.42095 * 104.27452 * 319.13069 * 10 9 2 12 12 O 1.42097 * 104.27618 * 191.26784 * 10 9 2 13 13 C 1.81398 * 104.44717 * 75.19727 * 10 9 2 14 14 C 1.53005 * 109.47004 * 183.08810 * 13 10 9 15 15 C 1.50690 * 115.55190 * 299.67734 * 14 13 10 16 16 H 1.08003 * 120.00494 * 93.69718 * 15 14 13 17 17 C 1.37878 * 119.99989 * 273.69461 * 15 14 13 18 18 N 1.31516 * 120.00136 * 6.14019 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 186.14469 * 17 15 14 20 20 H 1.48505 * 109.47221 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47193 * 299.99783 * 19 17 15 22 22 H 1.48500 * 109.47291 * 59.99651 * 19 17 15 23 23 C 1.52998 * 117.49167 * 85.34768 * 14 13 10 24 24 C 1.53002 * 117.49643 * 154.00241 * 14 13 10 25 25 H 1.09000 * 109.46952 * 308.81913 * 1 2 3 26 26 H 1.08998 * 109.47400 * 68.82162 * 1 2 3 27 27 H 1.09003 * 109.46851 * 188.82382 * 1 2 3 28 28 H 1.08998 * 109.46885 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47225 * 300.00505 * 3 2 1 30 30 H 1.08999 * 109.46677 * 60.00810 * 3 2 1 31 31 H 1.08996 * 109.46555 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47135 * 299.99968 * 4 2 1 33 33 H 1.08998 * 109.46819 * 299.99589 * 5 4 2 34 34 H 1.08998 * 109.47194 * 60.00127 * 5 4 2 35 35 H 0.96705 * 117.00006 * 179.97438 * 8 6 5 36 36 H 0.97008 * 119.99653 * 128.78281 * 9 2 1 37 37 H 1.09002 * 109.47277 * 63.09703 * 13 10 9 38 38 H 1.08999 * 109.47618 * 303.09517 * 13 10 9 39 39 H 0.97003 * 120.00037 * 355.20425 * 18 17 15 40 40 H 1.09011 * 117.49548 * 215.00075 * 23 14 13 41 41 H 1.08995 * 117.50628 * 0.02562 * 23 14 13 42 42 H 1.08997 * 117.50019 * 359.97438 * 24 14 13 43 43 H 1.09004 * 117.49664 * 144.97510 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5298 0.0003 -2.4986 6 6 2.0315 -0.7104 -3.7291 7 8 2.7262 -1.6928 -3.6184 8 8 1.7076 -0.2515 -4.9482 9 7 2.0184 -0.6907 1.1960 10 16 1.4476 -0.2628 2.6905 11 8 1.3809 1.1559 2.6470 12 8 2.3132 -0.9281 3.5999 13 6 -0.2187 -0.9765 2.7598 14 6 -0.8883 -0.5812 4.0776 15 6 -0.1842 -1.0412 5.3280 16 1 0.5191 -0.3879 5.8231 17 6 -0.4379 -2.2959 5.8401 18 7 -1.1998 -3.1362 5.1744 19 14 0.3006 -2.8025 7.4795 20 1 -0.1212 -4.1886 7.8053 21 1 1.7819 -2.7423 7.3948 22 1 -0.1723 -1.8790 8.5419 23 6 -1.6075 0.7683 4.1274 24 6 -2.4172 -0.5306 4.1057 25 1 -0.3633 0.6442 0.8007 26 1 -0.3634 0.3713 -0.9582 27 1 -0.3633 -1.0155 0.1576 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2495 33 1 0.4398 0.0002 -2.4984 34 1 1.8932 1.0279 -2.4985 35 1 2.0532 -0.7404 -5.7075 36 1 2.6762 -1.3988 1.1125 37 1 -0.1516 -2.0626 2.6980 38 1 -0.8100 -0.6008 1.9248 39 1 -1.6396 -2.8501 4.3585 40 1 -1.5714 1.3235 5.0649 41 1 -1.6040 1.3743 3.2215 42 1 -2.9460 -0.7784 3.1853 43 1 -2.9138 -0.8304 5.0285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263552503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:36 Heat of formation + Delta-G solvation = -149.613761 kcal Electronic energy + Delta-G solvation = -26338.326158 eV Core-core repulsion = 22511.384982 eV Total energy + Delta-G solvation = -3826.941176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63342 -38.47227 -37.09943 -36.47566 -36.19572 -35.14070 -32.70534 -31.96861 -29.79618 -28.74559 -27.03761 -25.88995 -24.90576 -21.94386 -21.42369 -19.98726 -19.48513 -18.68958 -18.50219 -17.39253 -16.88196 -16.77691 -16.52226 -15.71123 -15.42552 -14.67728 -14.43426 -14.10461 -13.84304 -13.71361 -13.62601 -13.37097 -13.26279 -12.70816 -12.61512 -12.36823 -12.17692 -11.87106 -11.72281 -11.48696 -11.35876 -11.27263 -11.22005 -11.10506 -10.98071 -10.85015 -10.75321 -10.62103 -10.38413 -10.31318 -10.07151 -9.76011 -9.33592 -8.64501 -8.48030 -8.32413 -6.45024 -4.23681 1.01210 1.88592 2.68705 3.34787 3.45614 3.50510 3.66983 4.41857 4.46004 4.50192 4.53453 4.65217 4.82885 4.90168 4.93307 4.97799 5.04807 5.19621 5.20321 5.35606 5.48606 5.56076 5.63736 5.70257 5.79947 5.84803 5.89133 6.01216 6.09816 6.13304 6.16302 6.31600 6.34825 6.51766 6.61136 6.74543 7.02021 7.16240 7.25030 7.55449 8.03599 8.34101 8.77710 9.55055 10.95075 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.003585 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.422044 B = 7808.258413 C = 7934.417116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.184 3.816 3 C -0.191 4.191 4 C -0.108 4.108 5 C -0.118 4.118 6 C 0.478 3.522 7 O -0.515 6.515 8 O -0.520 6.520 9 N -1.125 6.125 10 S 2.618 3.382 11 O -0.969 6.969 12 O -0.946 6.946 13 C -0.581 4.581 14 C 0.023 3.977 15 C -0.591 4.591 16 H 0.062 0.938 17 C 0.040 3.960 18 N -0.898 5.898 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.285 1.285 23 C -0.192 4.192 24 C -0.164 4.164 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.410 0.590 36 H 0.413 0.587 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.275 0.725 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 6.395 -17.922 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.096 3.904 3 C -0.249 4.249 4 C -0.147 4.147 5 C -0.156 4.156 6 C 0.320 3.680 7 O -0.403 6.403 8 O -0.332 6.332 9 N -0.880 5.880 10 S 2.714 3.286 11 O -0.959 6.959 12 O -0.936 6.936 13 C -0.713 4.713 14 C 0.021 3.979 15 C -0.628 4.628 16 H 0.080 0.920 17 C -0.167 4.167 18 N -0.532 5.532 19 Si 0.889 3.111 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.212 1.212 23 C -0.229 4.229 24 C -0.204 4.204 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.268 0.732 36 H 0.246 0.754 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.211 5.707 -15.837 17.138 hybrid contribution -0.239 0.142 -2.113 2.131 sum 2.972 5.848 -17.950 19.112 Atomic orbital electron populations 1.22943 0.94951 1.03687 1.04297 1.19920 0.93176 0.92491 0.84860 1.22816 1.02036 0.95164 1.04897 1.21674 1.02353 0.99903 0.90761 1.21576 1.03961 1.01355 0.88718 1.23599 0.77019 0.82508 0.84838 1.90748 1.35906 1.26301 1.87297 1.84543 1.72454 1.59140 1.17037 1.56149 1.57336 1.51367 1.23199 1.04802 0.77435 0.74887 0.71455 1.93419 1.87806 1.29188 1.85465 1.93564 1.63217 1.76349 1.60487 1.30541 1.21599 1.12805 1.06348 1.18544 0.91881 0.96353 0.91164 1.21391 1.28205 1.04078 1.09170 0.92027 1.25801 0.95510 0.92381 1.03051 1.70771 1.28695 1.35945 1.17788 0.83657 0.76653 0.76231 0.74585 1.20661 1.20623 1.21166 1.23060 1.07425 0.90961 1.01456 1.22776 0.95301 1.01209 1.01069 0.90704 0.90038 0.90588 0.92163 0.91899 0.87680 0.90007 0.89963 0.86880 0.86790 0.73174 0.75448 0.85809 0.87022 0.91388 0.89325 0.90653 0.91229 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 6.59 37.16 0.24 -1.93 16 2 C 0.18 2.14 0.86 -131.81 -0.11 2.02 16 3 C -0.19 -2.20 8.05 37.16 0.30 -1.91 16 4 C -0.11 -1.03 3.68 -26.72 -0.10 -1.13 16 5 C -0.12 -0.86 5.12 -27.88 -0.14 -1.00 16 6 C 0.48 4.17 8.33 36.00 0.30 4.47 16 7 O -0.51 -6.29 16.74 -18.75 -0.31 -6.61 16 8 O -0.52 -3.35 13.42 -39.26 -0.53 -3.88 16 9 N -1.12 -16.27 5.43 0.54 0.00 -16.27 16 10 S 2.62 51.78 4.70 -107.50 -0.50 51.27 16 11 O -0.97 -19.87 14.35 -57.54 -0.83 -20.69 16 12 O -0.95 -22.99 17.41 -57.54 -1.00 -24.00 16 13 C -0.58 -11.67 5.19 37.16 0.19 -11.47 16 14 C 0.02 0.54 0.99 -155.66 -0.15 0.39 16 15 C -0.59 -16.33 7.76 -34.44 -0.27 -16.60 16 16 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 17 C 0.04 1.11 5.38 -17.82 -0.10 1.02 16 18 N -0.90 -25.77 13.55 55.43 0.75 -25.02 16 19 Si 1.06 25.39 29.91 -169.99 -5.08 20.31 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.19 -4.06 9.95 -26.70 -0.27 -4.32 16 24 C -0.16 -3.59 8.55 -26.69 -0.23 -3.82 16 25 H 0.07 0.92 6.00 -51.93 -0.31 0.61 16 26 H 0.08 0.61 6.00 -51.93 -0.31 0.30 16 27 H 0.08 0.81 7.13 -51.93 -0.37 0.44 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.10 1.52 5.33 -51.93 -0.28 1.25 16 31 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.11 0.64 6.24 -51.93 -0.32 0.32 16 34 H 0.11 0.66 6.43 -51.93 -0.33 0.32 16 35 H 0.41 1.06 9.10 45.56 0.41 1.47 16 36 H 0.41 5.34 8.60 -34.48 -0.30 5.04 16 37 H 0.12 2.58 8.01 -51.92 -0.42 2.17 16 38 H 0.11 1.82 4.41 -51.92 -0.23 1.59 16 39 H 0.27 7.65 6.28 -40.82 -0.26 7.39 16 40 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -36.15 351.98 -7.73 -43.88 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.21 Total: 9.98 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -0.33 Total: -34.28 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.75 Total: -41.29 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -2.67 Total: -55.17 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.50 Total: 51.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.15 -7.73 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263552503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.734 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds