Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 C 1.53004 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46902 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47176 * 304.99720 * 5 4 3 7 7 N 1.46502 * 109.47534 * 64.99787 * 5 4 3 8 8 S 1.65589 * 120.00252 * 215.00006 * 7 5 4 9 9 O 1.42100 * 104.27969 * 308.92611 * 8 7 5 10 10 O 1.42104 * 104.27953 * 181.06840 * 8 7 5 11 11 C 1.81398 * 104.45075 * 64.99845 * 8 7 5 12 12 C 1.53006 * 109.47354 * 184.07545 * 11 8 7 13 13 C 1.50703 * 115.54954 * 294.68239 * 12 11 8 14 14 H 1.07996 * 119.99964 * 114.88902 * 13 12 11 15 15 C 1.37876 * 119.99910 * 294.61431 * 13 12 11 16 16 N 1.31516 * 120.00093 * 174.90672 * 15 13 12 17 17 Si 1.86803 * 120.00092 * 354.91011 * 15 13 12 18 18 H 1.48503 * 109.47406 * 93.45339 * 17 15 13 19 19 H 1.48495 * 109.47231 * 213.45489 * 17 15 13 20 20 H 1.48504 * 109.47097 * 333.45559 * 17 15 13 21 21 C 1.52997 * 117.49868 * 80.34977 * 12 11 8 22 22 C 1.53004 * 117.49884 * 149.00998 * 12 11 8 23 23 C 1.50703 * 109.46858 * 185.00043 * 5 4 3 24 24 O 1.20828 * 119.99360 * 239.99817 * 23 5 4 25 25 O 1.34219 * 120.00416 * 60.00067 * 23 5 4 26 26 H 1.08999 * 109.47252 * 300.00144 * 1 2 3 27 27 H 1.09001 * 109.47267 * 60.00116 * 1 2 3 28 28 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47252 * 239.99856 * 2 1 3 30 30 H 1.09001 * 109.47267 * 119.99884 * 2 1 3 31 31 H 1.08991 * 109.47122 * 60.00147 * 3 2 1 32 32 H 1.09001 * 109.46964 * 300.00069 * 3 2 1 33 33 H 1.09004 * 109.47093 * 59.99758 * 4 3 2 34 34 H 1.09001 * 109.46968 * 299.99718 * 4 3 2 35 35 H 0.97003 * 119.99743 * 34.99956 * 7 5 4 36 36 H 1.08999 * 109.47492 * 64.07296 * 11 8 7 37 37 H 1.09002 * 109.47414 * 304.07510 * 11 8 7 38 38 H 0.96999 * 119.99727 * 180.02562 * 16 15 13 39 39 H 1.08994 * 117.50103 * 215.00571 * 21 12 11 40 40 H 1.09005 * 117.50010 * 0.02588 * 21 12 11 41 41 H 1.08994 * 117.49850 * 359.97438 * 22 12 11 42 42 H 1.08998 * 117.49710 * 144.97602 * 22 12 11 43 43 H 0.96703 * 117.00454 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6449 3.4238 -0.8431 7 7 3.6928 3.5405 1.2504 8 16 3.2961 5.1481 1.2550 9 8 4.3811 5.7788 0.5885 10 8 3.0071 5.4339 2.6167 11 6 1.7888 5.2453 0.2505 12 6 1.3740 6.7097 0.0935 13 6 0.9565 7.4067 1.3627 14 1 1.5434 8.2284 1.7457 15 6 -0.1779 6.9990 2.0319 16 7 -0.4877 7.5388 3.1905 17 14 -1.2748 5.6797 1.2932 18 1 -0.8751 4.3506 1.8214 19 1 -2.6889 5.9516 1.6557 20 1 -1.1323 5.6881 -0.1850 21 6 2.1056 7.5419 -0.9616 22 6 0.6574 7.1063 -1.1989 23 6 5.5818 2.8868 -0.1258 24 8 6.2592 3.3845 0.7422 25 8 6.1668 2.3356 -1.2007 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.6689 3.0327 2.0766 36 1 0.9885 4.6917 0.7416 37 1 1.9788 4.8141 -0.7324 38 1 -1.2856 7.2517 3.6614 39 1 2.2849 8.5934 -0.7378 40 1 2.8820 7.0460 -1.5442 41 1 0.4818 6.3241 -1.9374 42 1 -0.1163 7.8710 -1.1310 43 1 7.1329 2.3604 -1.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263560615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -151.724744 kcal Electronic energy + Delta-G solvation = -26716.956375 eV Core-core repulsion = 22889.923661 eV Total energy + Delta-G solvation = -3827.032715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.41281 -37.23363 -37.11737 -36.33919 -36.11481 -35.18140 -34.37544 -32.21542 -30.55085 -28.65650 -27.24897 -25.54612 -23.38902 -21.68432 -21.35257 -21.24954 -19.79423 -18.86087 -18.11187 -17.24178 -17.12434 -16.54958 -16.06760 -15.56133 -15.54311 -15.22112 -15.00039 -14.35641 -14.07416 -13.92896 -13.60991 -13.29973 -13.16378 -12.90168 -12.59624 -12.40745 -12.25580 -11.61447 -11.52238 -11.42741 -11.39647 -11.34037 -11.26481 -11.21462 -11.02571 -10.86170 -10.79639 -10.75766 -10.73452 -10.53015 -10.18083 -9.71978 -9.53097 -9.17321 -8.78158 -8.46830 -6.18352 -4.24594 0.81326 2.15989 2.80663 3.11739 3.23678 3.27203 3.32277 4.26322 4.30879 4.40550 4.51576 4.66752 4.74952 4.78924 4.82832 4.96314 5.04807 5.12895 5.14518 5.35995 5.44918 5.45585 5.50941 5.64414 5.65641 5.77816 5.81010 5.87602 5.97609 6.00170 6.07134 6.16036 6.20036 6.42410 6.43611 6.58261 6.83095 6.99739 7.05039 7.56403 7.84422 8.36785 8.86803 9.42259 10.93258 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.006246 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.047119 B = 4482.033122 C = 5759.362737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.130 4.130 4 C -0.119 4.119 5 C 0.169 3.831 6 H 0.120 0.880 7 N -1.109 6.109 8 S 2.609 3.391 9 O -0.956 6.956 10 O -0.924 6.924 11 C -0.580 4.580 12 C 0.001 3.999 13 C -0.509 4.509 14 H 0.086 0.914 15 C 0.092 3.908 16 N -0.876 5.876 17 Si 0.855 3.145 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.244 1.244 21 C -0.181 4.181 22 C -0.175 4.175 23 C 0.460 3.540 24 O -0.488 6.488 25 O -0.519 6.519 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -16.748 -10.482 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.168 4.168 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.138 0.862 7 N -0.865 5.865 8 S 2.704 3.296 9 O -0.946 6.946 10 O -0.914 6.914 11 C -0.711 4.711 12 C -0.002 4.002 13 C -0.546 4.546 14 H 0.104 0.896 15 C -0.114 4.114 16 N -0.511 5.511 17 Si 0.681 3.319 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.168 1.168 21 C -0.218 4.218 22 C -0.215 4.215 23 C 0.298 3.702 24 O -0.373 6.373 25 O -0.331 6.331 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.634 -15.821 -9.740 19.415 hybrid contribution -0.551 -1.218 -0.300 1.370 sum 5.084 -17.039 -10.040 20.420 Atomic orbital electron populations 1.21802 0.95753 1.01560 1.02313 1.21492 0.96050 0.96325 1.02033 1.21748 0.93773 0.97704 1.03549 1.21889 0.97006 0.92592 1.04313 1.20176 0.87194 0.97909 0.88953 0.86207 1.56147 1.83469 1.32435 1.14495 1.05295 0.76490 0.71627 0.76200 1.93540 1.50352 1.73095 1.77630 1.93633 1.85711 1.80614 1.31452 1.30343 1.20387 1.07129 1.13266 1.18827 1.02141 0.87050 0.92177 1.20343 1.11177 1.18731 1.04363 0.89605 1.24911 0.96992 0.95642 0.93857 1.69881 1.25662 1.42230 1.13307 0.87186 0.80500 0.82308 0.81888 1.20163 1.21237 1.16767 1.22997 0.94428 1.00949 1.03406 1.23070 0.94987 1.03030 1.00376 1.24090 0.92720 0.74431 0.79006 1.90750 1.65183 1.40649 1.40681 1.84498 1.28742 1.74630 1.45238 0.92470 0.92581 0.92810 0.91905 0.91916 0.90827 0.91116 0.89086 0.90365 0.74622 0.86080 0.87417 0.92246 0.88802 0.90033 0.90991 0.89008 0.73270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.91 37.15 0.37 -0.98 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.13 -1.16 5.10 -26.73 -0.14 -1.29 16 4 C -0.12 -1.00 4.78 -26.73 -0.13 -1.13 16 5 C 0.17 1.97 2.58 -69.08 -0.18 1.79 16 6 H 0.12 1.21 7.08 -51.93 -0.37 0.84 16 7 N -1.11 -16.27 4.30 -5.88 -0.03 -16.30 16 8 S 2.61 52.55 5.14 -107.50 -0.55 52.00 16 9 O -0.96 -21.12 17.78 -57.54 -1.02 -22.14 16 10 O -0.92 -22.87 17.64 -57.54 -1.01 -23.88 16 11 C -0.58 -11.03 5.47 37.16 0.20 -10.82 16 12 C 0.00 0.02 0.79 -155.66 -0.12 -0.10 16 13 C -0.51 -14.06 8.66 -34.44 -0.30 -14.36 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 16 N -0.88 -26.45 13.96 55.43 0.77 -25.68 16 17 Si 0.85 20.01 24.94 -169.99 -4.24 15.77 16 18 H -0.28 -6.12 7.03 56.52 0.40 -5.72 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.24 -5.21 5.75 56.52 0.32 -4.88 16 21 C -0.18 -3.61 9.96 -26.69 -0.27 -3.88 16 22 C -0.18 -3.47 8.06 -26.69 -0.22 -3.69 16 23 C 0.46 6.01 7.65 36.01 0.28 6.28 16 24 O -0.49 -8.40 17.19 -18.75 -0.32 -8.72 16 25 O -0.52 -4.81 13.23 -39.23 -0.52 -5.33 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.61 7.99 -51.93 -0.42 0.20 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.42 5.40 8.80 -34.46 -0.30 5.10 16 36 H 0.12 2.30 5.02 -51.92 -0.26 2.04 16 37 H 0.11 1.54 7.28 -51.92 -0.38 1.16 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.41 2.21 9.10 45.56 0.41 2.63 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -37.38 367.39 -8.14 -45.52 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.00 Total: 10.02 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -0.75 Total: -26.80 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.75 Total: -41.98 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -2.88 Total: -60.08 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.24 Total: 15.77 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.55 Total: 52.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.38 -8.14 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263560615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.201 kcal (2) G-P(sol) polarization free energy of solvation -37.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds