Wall clock time and date at job start Tue Mar 31 2020 12:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 C 1.53004 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46902 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47176 * 304.99720 * 5 4 3 7 7 N 1.46502 * 109.47534 * 64.99787 * 5 4 3 8 8 S 1.65589 * 120.00252 * 215.00006 * 7 5 4 9 9 O 1.42100 * 104.27969 * 308.92611 * 8 7 5 10 10 O 1.42104 * 104.27953 * 181.06840 * 8 7 5 11 11 C 1.81398 * 104.45075 * 64.99845 * 8 7 5 12 12 C 1.53006 * 109.47354 * 184.07545 * 11 8 7 13 13 C 1.50703 * 115.54954 * 294.68239 * 12 11 8 14 14 H 1.07996 * 119.99964 * 114.88902 * 13 12 11 15 15 C 1.37876 * 119.99910 * 294.61431 * 13 12 11 16 16 N 1.31516 * 120.00093 * 174.90672 * 15 13 12 17 17 Si 1.86803 * 120.00092 * 354.91011 * 15 13 12 18 18 H 1.48503 * 109.47406 * 93.45339 * 17 15 13 19 19 H 1.48495 * 109.47231 * 213.45489 * 17 15 13 20 20 H 1.48504 * 109.47097 * 333.45559 * 17 15 13 21 21 C 1.52997 * 117.49868 * 80.34977 * 12 11 8 22 22 C 1.53004 * 117.49884 * 149.00998 * 12 11 8 23 23 C 1.50703 * 109.46858 * 185.00043 * 5 4 3 24 24 O 1.20828 * 119.99360 * 239.99817 * 23 5 4 25 25 O 1.34219 * 120.00416 * 60.00067 * 23 5 4 26 26 H 1.08999 * 109.47252 * 300.00144 * 1 2 3 27 27 H 1.09001 * 109.47267 * 60.00116 * 1 2 3 28 28 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47252 * 239.99856 * 2 1 3 30 30 H 1.09001 * 109.47267 * 119.99884 * 2 1 3 31 31 H 1.08991 * 109.47122 * 60.00147 * 3 2 1 32 32 H 1.09001 * 109.46964 * 300.00069 * 3 2 1 33 33 H 1.09004 * 109.47093 * 59.99758 * 4 3 2 34 34 H 1.09001 * 109.46968 * 299.99718 * 4 3 2 35 35 H 0.97003 * 119.99743 * 34.99956 * 7 5 4 36 36 H 1.08999 * 109.47492 * 64.07296 * 11 8 7 37 37 H 1.09002 * 109.47414 * 304.07510 * 11 8 7 38 38 H 0.96999 * 119.99727 * 180.02562 * 16 15 13 39 39 H 1.08994 * 117.50103 * 215.00571 * 21 12 11 40 40 H 1.09005 * 117.50010 * 0.02588 * 21 12 11 41 41 H 1.08994 * 117.49850 * 359.97438 * 22 12 11 42 42 H 1.08998 * 117.49710 * 144.97602 * 22 12 11 43 43 H 0.96703 * 117.00454 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6449 3.4238 -0.8431 7 7 3.6928 3.5405 1.2504 8 16 3.2961 5.1481 1.2550 9 8 4.3811 5.7788 0.5885 10 8 3.0071 5.4339 2.6167 11 6 1.7888 5.2453 0.2505 12 6 1.3740 6.7097 0.0935 13 6 0.9565 7.4067 1.3627 14 1 1.5434 8.2284 1.7457 15 6 -0.1779 6.9990 2.0319 16 7 -0.4877 7.5388 3.1905 17 14 -1.2748 5.6797 1.2932 18 1 -0.8751 4.3506 1.8214 19 1 -2.6889 5.9516 1.6557 20 1 -1.1323 5.6881 -0.1850 21 6 2.1056 7.5419 -0.9616 22 6 0.6574 7.1063 -1.1989 23 6 5.5818 2.8868 -0.1258 24 8 6.2592 3.3845 0.7422 25 8 6.1668 2.3356 -1.2007 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.6689 3.0327 2.0766 36 1 0.9885 4.6917 0.7416 37 1 1.9788 4.8141 -0.7324 38 1 -1.2856 7.2517 3.6614 39 1 2.2849 8.5934 -0.7378 40 1 2.8820 7.0460 -1.5442 41 1 0.4818 6.3241 -1.9374 42 1 -0.1163 7.8710 -1.1310 43 1 7.1329 2.3604 -1.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263560615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:23 Heat of formation + Delta-G solvation = -182.508302 kcal Electronic energy + Delta-G solvation = -26718.291251 eV Core-core repulsion = 22889.923661 eV Total energy + Delta-G solvation = -3828.367590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37633 -38.81943 -38.15010 -37.87372 -37.05268 -36.85383 -35.19846 -34.30589 -31.38848 -30.21315 -28.07680 -27.58688 -24.09859 -23.24700 -22.25279 -21.87315 -21.40412 -20.44302 -19.10732 -18.71833 -18.52848 -17.99338 -17.20680 -16.93172 -16.69009 -16.53471 -16.25090 -15.77836 -15.48151 -14.92833 -14.74954 -14.53469 -14.41771 -14.07843 -14.00418 -13.56588 -13.23057 -13.13107 -13.00808 -12.97966 -12.66496 -12.61021 -12.46597 -12.38184 -12.15475 -12.14952 -12.03674 -11.90695 -11.78174 -11.64320 -11.54009 -11.31279 -10.95454 -10.73626 -10.69195 -10.20127 -8.29938 -6.42203 -0.70998 1.19955 1.29740 1.39290 1.53218 1.74591 2.13189 2.36752 2.87559 2.96888 3.18745 3.35898 3.48456 3.74423 3.79567 3.98325 4.07659 4.15992 4.26966 4.31265 4.43369 4.43814 4.48613 4.60548 4.73480 4.86438 4.90684 4.92830 4.99605 5.08804 5.11820 5.22096 5.23429 5.37998 5.49509 5.51109 5.58883 5.61703 5.63856 5.91105 6.23120 6.67074 7.00701 7.28943 8.86713 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.006246 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.047119 B = 4482.033122 C = 5759.362737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.137 4.137 4 C -0.108 4.108 5 C 0.156 3.844 6 H 0.146 0.854 7 N -1.098 6.098 8 S 2.609 3.391 9 O -0.986 6.986 10 O -0.990 6.990 11 C -0.569 4.569 12 C -0.037 4.037 13 C -0.515 4.515 14 H 0.024 0.976 15 C 0.025 3.975 16 N -0.941 5.941 17 Si 0.914 3.086 18 H -0.256 1.256 19 H -0.294 1.294 20 H -0.197 1.197 21 C -0.179 4.179 22 C -0.152 4.152 23 C 0.463 3.537 24 O -0.541 6.541 25 O -0.502 6.502 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.426 0.574 36 H 0.127 0.873 37 H 0.170 0.830 38 H 0.267 0.733 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 -20.361 -14.816 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C -0.174 4.174 4 C -0.147 4.147 5 C 0.046 3.954 6 H 0.163 0.837 7 N -0.858 5.858 8 S 2.707 3.293 9 O -0.975 6.975 10 O -0.980 6.980 11 C -0.702 4.702 12 C -0.039 4.039 13 C -0.552 4.552 14 H 0.042 0.958 15 C -0.175 4.175 16 N -0.578 5.578 17 Si 0.736 3.264 18 H -0.180 1.180 19 H -0.220 1.220 20 H -0.119 1.119 21 C -0.216 4.216 22 C -0.191 4.191 23 C 0.303 3.697 24 O -0.430 6.430 25 O -0.315 6.315 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.262 0.738 36 H 0.145 0.855 37 H 0.188 0.812 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.100 0.900 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.139 -19.451 -14.113 24.575 hybrid contribution -0.242 -0.042 1.001 1.031 sum 4.897 -19.493 -13.112 23.998 Atomic orbital electron populations 1.21841 0.96442 1.01879 1.01678 1.21478 0.95409 0.95912 1.02879 1.21823 0.93830 0.98333 1.03451 1.21892 0.96763 0.90197 1.05821 1.20711 0.86692 1.00067 0.87913 0.83711 1.55587 1.83309 1.30532 1.16383 1.04861 0.76804 0.72621 0.75017 1.93495 1.51712 1.74711 1.77599 1.93553 1.86592 1.82596 1.35293 1.30142 1.18834 1.04922 1.16261 1.18747 1.05404 0.88943 0.90842 1.20472 1.10391 1.17521 1.06798 0.95810 1.25978 0.98795 0.98672 0.94020 1.70079 1.26750 1.45207 1.15787 0.86254 0.77184 0.79305 0.83704 1.18048 1.22039 1.11857 1.23103 0.96061 1.00118 1.02331 1.23171 0.94165 1.03376 0.98344 1.24363 0.93269 0.73285 0.78772 1.90751 1.66389 1.43170 1.42688 1.84446 1.30470 1.73355 1.43224 0.93986 0.92284 0.92138 0.90242 0.91929 0.92454 0.89756 0.86395 0.90030 0.73775 0.85515 0.81235 0.92389 0.90593 0.86854 0.86236 0.90024 0.71158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.91 71.98 0.71 -1.50 16 2 C -0.12 -1.38 5.93 30.59 0.18 -1.20 16 3 C -0.14 -1.81 5.10 30.60 0.16 -1.65 16 4 C -0.11 -1.32 4.78 30.59 0.15 -1.18 16 5 C 0.16 3.07 2.58 44.24 0.11 3.18 16 6 H 0.15 2.11 7.08 -2.39 -0.02 2.09 16 7 N -1.10 -30.41 4.30 -172.52 -0.74 -31.15 16 8 S 2.61 103.98 5.14 -56.49 -0.29 103.69 16 9 O -0.99 -43.28 17.78 -127.65 -2.27 -45.55 16 10 O -0.99 -51.42 17.64 -127.65 -2.25 -53.68 16 11 C -0.57 -19.55 5.47 71.98 0.39 -19.16 16 12 C -0.04 -1.58 0.79 -52.92 -0.04 -1.62 16 13 C -0.51 -29.47 8.66 25.60 0.22 -29.25 16 14 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 15 C 0.02 1.42 5.47 84.65 0.46 1.88 16 16 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 17 Si 0.91 40.03 24.94 68.60 1.71 41.74 16 18 H -0.26 -10.30 7.03 99.48 0.70 -9.60 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.20 -7.09 5.75 99.48 0.57 -6.51 16 21 C -0.18 -6.72 9.96 30.62 0.30 -6.42 16 22 C -0.15 -5.31 8.06 30.62 0.25 -5.06 16 23 C 0.46 10.86 7.65 71.24 0.55 11.40 16 24 O -0.54 -18.21 17.19 21.96 0.38 -17.83 16 25 O -0.50 -7.39 13.23 -51.31 -0.68 -8.06 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.96 7.75 -2.39 -0.02 0.94 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 0.90 7.99 -2.38 -0.02 0.88 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.43 10.71 8.80 -96.75 -0.85 9.86 16 36 H 0.13 4.29 5.02 -2.39 -0.01 4.28 16 37 H 0.17 3.63 7.28 -2.39 -0.02 3.62 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 41 H 0.12 3.12 8.14 -2.39 -0.02 3.11 16 42 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.43 3.22 9.10 -74.06 -0.67 2.55 16 Total: -1.00 -89.85 367.39 -1.04 -90.89 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.64 Total: 30.34 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.45 Total: -50.57 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -0.44 Total: -90.97 kcal Atomic # 8 Polarization: -120.30 SS G_CDS: -4.82 Total: -125.12 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.71 Total: 41.74 kcal Atomic # 16 Polarization: 103.98 SS G_CDS: -0.29 Total: 103.69 kcal Total: -89.85 -1.04 -90.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263560615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.621 kcal (2) G-P(sol) polarization free energy of solvation -89.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds