Wall clock time and date at job start Tue Mar 31 2020 12:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35250 * 126.06772 * 2 1 4 4 C 1.40424 * 107.86228 * 180.26560 * 3 2 1 5 5 N 1.39988 * 125.97765 * 179.74079 * 4 3 2 6 6 C 1.46495 * 119.99726 * 0.02562 * 5 4 3 7 7 H 1.09000 * 109.47346 * 35.00434 * 6 5 4 8 8 C 1.52996 * 109.47262 * 274.99984 * 6 5 4 9 9 C 1.50710 * 109.47099 * 155.00215 * 6 5 4 10 10 C 1.38264 * 119.99072 * 39.72225 * 9 6 5 11 11 C 1.38216 * 120.02123 * 179.76562 * 10 9 6 12 12 C 1.38237 * 120.01829 * 0.51402 * 11 10 9 13 13 C 1.38329 * 119.98300 * 359.73999 * 12 11 10 14 14 Cl 1.73601 * 120.01267 * 180.02562 * 13 12 11 15 15 C 1.38188 * 119.99007 * 220.00074 * 9 6 5 16 16 N 1.31224 * 108.04781 * 359.74086 * 4 3 2 17 17 N 1.34965 * 126.06870 * 179.81462 * 2 1 3 18 18 C 1.46491 * 125.97174 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.46957 * 269.71224 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.09001 * 109.46771 * 270.18580 * 1 2 3 28 28 H 1.08994 * 109.47118 * 30.18415 * 1 2 3 29 29 H 1.09000 * 109.47010 * 150.18788 * 1 2 3 30 30 H 1.08002 * 126.06975 * 0.02562 * 3 2 1 31 31 H 0.97003 * 120.00112 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47258 * 180.02562 * 8 6 5 33 33 H 1.09003 * 109.47701 * 300.00162 * 8 6 5 34 34 H 1.09000 * 109.47383 * 60.00189 * 8 6 5 35 35 H 1.07997 * 119.98838 * 359.97438 * 10 9 6 36 36 H 1.08002 * 119.98888 * 180.25269 * 11 10 9 37 37 H 1.07998 * 120.00951 * 179.71889 * 12 11 10 38 38 H 1.07994 * 120.01631 * 359.97438 * 15 9 6 39 39 H 1.09004 * 109.47166 * 149.71490 * 18 17 2 40 40 H 1.08994 * 109.47507 * 29.71196 * 18 17 2 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6373 0.6545 -0.0062 5 7 4.7724 1.4738 -0.0133 6 6 4.6238 2.9311 -0.0143 7 1 3.7528 3.2080 0.5796 8 6 4.4392 3.4241 -1.4509 9 6 5.8573 3.5622 0.5787 10 6 7.1065 3.0480 0.2841 11 6 8.2384 3.6293 0.8237 12 6 8.1216 4.7185 1.6668 13 6 6.8717 5.2301 1.9661 14 17 6.7241 6.5984 3.0244 15 6 5.7390 4.6511 1.4214 16 7 3.6337 -0.6577 -0.0041 17 7 2.3017 -1.0909 0.0035 18 6 1.8500 -2.4845 0.0086 19 6 1.7024 -2.9595 1.4311 20 1 1.9226 -2.2902 2.2496 21 6 1.2802 -4.2468 1.6878 22 7 1.0116 -5.0617 0.6911 23 14 1.0899 -4.8331 3.4511 24 1 0.0936 -3.9827 4.1508 25 1 0.6273 -6.2443 3.4562 26 1 2.3978 -4.7389 4.1481 27 1 -0.3633 0.0033 1.0277 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8917 -0.5109 30 1 1.9720 2.1212 0.0004 31 1 5.6573 1.0764 -0.0177 32 1 4.3292 4.5085 -1.4516 33 1 5.3103 3.1473 -2.0448 34 1 3.5472 2.9677 -1.8798 35 1 7.1980 2.1941 -0.3706 36 1 9.2142 3.2298 0.5899 37 1 9.0059 5.1698 2.0920 38 1 4.7630 5.0501 1.6548 39 1 2.5819 -3.1056 -0.5078 40 1 0.8887 -2.5567 -0.5001 41 1 0.7150 -5.9675 0.8717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271010857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:09 Heat of formation + Delta-G solvation = 72.756657 kcal Electronic energy + Delta-G solvation = -23246.293713 eV Core-core repulsion = 19766.553206 eV Total energy + Delta-G solvation = -3479.740507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89552 -40.60297 -37.86528 -37.04827 -35.52860 -33.83665 -32.54787 -31.99796 -31.37275 -29.99543 -28.31542 -27.62158 -25.12420 -24.55417 -23.69385 -22.11110 -20.94296 -20.50878 -18.76893 -18.18318 -17.59990 -16.88924 -16.55176 -16.32232 -16.15193 -15.84103 -15.43769 -15.09659 -14.72102 -14.63021 -14.37491 -14.26098 -14.01336 -13.68896 -13.54334 -13.37219 -13.13585 -13.03055 -12.74461 -12.73586 -12.62842 -12.41488 -12.30207 -12.21305 -12.17128 -11.88168 -11.66725 -11.15359 -10.84463 -10.72014 -9.90894 -9.68090 -9.32996 -8.58323 -8.23869 -6.48486 0.14356 0.25406 1.12909 1.29369 1.38534 1.39914 1.48922 1.76723 2.26835 2.34263 2.60149 2.83350 2.98203 3.52317 3.85723 3.95581 4.10377 4.21418 4.22759 4.32983 4.39466 4.48367 4.53925 4.68606 4.76596 4.76958 4.87007 4.93235 4.95842 4.98592 5.04312 5.13361 5.21270 5.30061 5.32905 5.38741 5.48008 5.55643 5.68873 5.80239 5.85655 6.37673 6.43129 6.68341 6.80857 7.22576 7.38696 8.74718 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002580 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.247557 B =10849.820933 C =11338.702703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.095 3.905 3 C -0.329 4.329 4 C 0.321 3.679 5 N -0.714 5.714 6 C 0.210 3.790 7 H 0.087 0.913 8 C -0.156 4.156 9 C -0.079 4.079 10 C -0.115 4.115 11 C -0.102 4.102 12 C -0.115 4.115 13 C -0.043 4.043 14 Cl -0.072 7.072 15 C -0.107 4.107 16 N -0.403 5.403 17 N -0.356 5.356 18 C 0.279 3.721 19 C -0.551 4.551 20 H 0.048 0.952 21 C 0.021 3.979 22 N -0.920 5.920 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.277 1.277 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.164 0.836 31 H 0.399 0.601 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.015 0.985 40 H 0.047 0.953 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 23.194 -0.867 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.361 4.361 4 C 0.064 3.936 5 N -0.357 5.357 6 C 0.105 3.895 7 H 0.105 0.895 8 C -0.215 4.215 9 C -0.080 4.080 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.134 4.134 13 C -0.070 4.070 14 Cl -0.043 7.043 15 C -0.126 4.126 16 N -0.236 5.236 17 N -0.137 5.137 18 C 0.160 3.840 19 C -0.589 4.589 20 H 0.066 0.934 21 C -0.180 4.180 22 N -0.558 5.558 23 Si 0.794 3.206 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.203 1.203 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.182 0.818 31 H 0.235 0.765 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.034 0.966 40 H 0.065 0.935 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.872 22.079 -0.832 24.200 hybrid contribution -0.149 -0.223 0.820 0.862 sum 9.724 21.856 -0.012 23.921 Atomic orbital electron populations 1.20468 0.85881 1.04087 1.03688 1.21624 0.96249 0.86834 0.98879 1.20798 0.89849 0.99201 1.26250 1.19388 0.89100 0.88956 0.96152 1.43726 1.03515 1.03108 1.85317 1.19642 0.95214 0.77714 0.96963 0.89468 1.22233 1.02367 1.01947 0.94944 1.19873 0.95011 0.95829 0.97328 1.21264 0.92018 1.00038 0.99976 1.21395 0.99804 0.94942 0.95899 1.21345 0.96346 0.97054 0.98634 1.21020 0.95514 0.92731 0.97700 1.98374 1.98352 1.42884 1.64726 1.20997 0.98663 0.96161 0.96771 1.77248 0.99292 1.11099 1.35933 1.48615 1.02209 1.07073 1.55836 1.19060 0.94394 0.73235 0.97354 1.21440 1.47101 0.98437 0.91955 0.93389 1.25754 0.94037 0.95955 1.02253 1.70005 1.45157 1.07530 1.33147 0.85424 0.78693 0.77718 0.78751 1.18824 1.19722 1.20258 0.90143 0.87064 0.92059 0.81844 0.76538 0.89922 0.92299 0.92467 0.84844 0.82585 0.83277 0.83893 0.96647 0.93504 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 10.11 71.24 0.72 -1.90 16 2 C 0.10 3.81 6.92 41.39 0.29 4.10 16 3 C -0.33 -11.64 9.83 22.11 0.22 -11.42 16 4 C 0.32 12.34 8.14 133.39 1.09 13.42 16 5 N -0.71 -20.62 5.23 -326.98 -1.71 -22.33 16 6 C 0.21 4.46 2.77 44.25 0.12 4.58 16 7 H 0.09 1.86 7.00 -2.39 -0.02 1.84 16 8 C -0.16 -2.87 9.48 71.98 0.68 -2.18 16 9 C -0.08 -1.50 4.96 -19.87 -0.10 -1.60 16 10 C -0.11 -1.98 9.06 22.27 0.20 -1.77 16 11 C -0.10 -1.47 10.04 22.26 0.22 -1.25 16 12 C -0.12 -1.73 9.83 22.29 0.22 -1.51 16 13 C -0.04 -0.75 6.32 22.33 0.14 -0.61 16 14 Cl -0.07 -1.21 28.96 -2.72 -0.08 -1.29 16 15 C -0.11 -1.92 9.45 22.29 0.21 -1.71 16 16 N -0.40 -19.33 12.59 -54.55 -0.69 -20.02 16 17 N -0.36 -17.41 3.59 -338.46 -1.22 -18.62 16 18 C 0.28 15.17 5.99 85.64 0.51 15.68 16 19 C -0.55 -31.63 9.39 25.60 0.24 -31.39 16 20 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 21 C 0.02 1.15 5.46 84.66 0.46 1.62 16 22 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 23 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.06 7.06 -2.39 -0.02 2.04 16 30 H 0.16 4.51 7.45 -2.91 -0.02 4.49 16 31 H 0.40 11.05 6.98 -92.71 -0.65 10.41 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.13 2.14 6.90 -2.91 -0.02 2.12 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.14 2.23 8.04 -2.91 -0.02 2.21 16 39 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.05 2.52 7.03 -2.39 -0.02 2.50 16 41 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -68.20 363.84 4.25 -63.95 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.40 Total: 21.20 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.23 Total: -15.93 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.33 Total: -113.72 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -68.20 4.25 -63.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271010857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.710 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds