Wall clock time and date at job start Tue Mar 31 2020 12:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35246 * 126.06838 * 2 1 4 4 C 1.40429 * 107.86488 * 179.97438 * 3 2 1 5 5 N 1.39988 * 125.97800 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99794 * 0.02562 * 5 4 3 7 7 H 1.09002 * 109.47391 * 325.00079 * 6 5 4 8 8 C 1.53000 * 109.46840 * 85.00410 * 6 5 4 9 9 C 1.50699 * 109.47060 * 205.00152 * 6 5 4 10 10 C 1.38241 * 119.98609 * 319.72689 * 9 6 5 11 11 C 1.38216 * 120.01208 * 179.72480 * 10 9 6 12 12 C 1.38349 * 119.98618 * 0.54927 * 11 10 9 13 13 Cl 1.73604 * 120.01316 * 179.70137 * 12 11 10 14 14 C 1.38352 * 119.97604 * 359.72504 * 12 11 10 15 15 C 1.38215 * 119.98292 * 0.02562 * 14 12 11 16 16 N 1.31226 * 108.04752 * 0.24433 * 4 3 2 17 17 N 1.34961 * 126.06813 * 179.97438 * 2 1 3 18 18 C 1.46504 * 125.97517 * 359.97438 * 17 2 1 19 19 C 1.50703 * 109.46453 * 90.00175 * 18 17 2 20 20 H 1.07996 * 120.00510 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99596 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99927 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00016 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46987 * 89.99689 * 23 21 19 25 25 H 1.48497 * 109.47004 * 209.99808 * 23 21 19 26 26 H 1.48505 * 109.47215 * 329.99730 * 23 21 19 27 27 H 1.09000 * 109.46762 * 90.02809 * 1 2 3 28 28 H 1.08998 * 109.46870 * 210.02083 * 1 2 3 29 29 H 1.08993 * 109.47238 * 330.02655 * 1 2 3 30 30 H 1.08006 * 126.06731 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99796 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99666 * 8 6 5 33 33 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99493 * 8 6 5 35 35 H 1.07998 * 119.99435 * 0.02562 * 10 9 6 36 36 H 1.08007 * 120.00466 * 180.27019 * 11 10 9 37 37 H 1.08001 * 120.01094 * 179.97438 * 14 12 11 38 38 H 1.07996 * 119.99207 * 180.02562 * 15 14 12 39 39 H 1.08992 * 109.47353 * 210.00042 * 18 17 2 40 40 H 1.08995 * 109.47135 * 330.00938 * 18 17 2 41 41 H 0.96992 * 120.00331 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6545 0.0006 5 7 4.7724 1.4738 0.0003 6 6 4.6239 2.9312 -0.0002 7 1 3.7495 3.2071 -0.5897 8 6 4.4472 3.4262 1.4367 9 6 5.8539 3.5613 -0.6009 10 6 7.1053 3.0547 -0.3033 11 6 8.2334 3.6286 -0.8585 12 6 8.1110 4.7174 -1.7032 13 17 9.5280 5.4437 -2.3948 14 6 6.8588 5.2276 -1.9962 15 6 5.7310 4.6496 -1.4445 16 7 3.6337 -0.6577 -0.0044 17 7 2.3016 -1.0909 0.0005 18 6 1.8500 -2.4846 0.0016 19 6 1.6947 -2.9633 -1.4189 20 1 1.9112 -2.2964 -2.2403 21 6 1.2772 -4.2533 -1.6698 22 7 1.1421 -4.6713 -2.9094 23 14 0.9034 -5.4071 -0.2491 24 1 -0.5277 -5.2815 0.1271 25 1 1.1864 -6.8058 -0.6598 26 1 1.7543 -5.0510 0.9148 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 1.9720 2.1212 0.0004 31 1 5.6573 1.0764 0.0004 32 1 5.3215 3.1503 2.0261 33 1 4.3362 4.5106 1.4363 34 1 3.5575 2.9705 1.8712 35 1 7.2010 2.2072 0.3592 36 1 9.2107 3.2299 -0.6294 37 1 6.7625 6.0778 -2.6552 38 1 4.7535 5.0475 -1.6734 39 1 2.5847 -3.1042 0.5156 40 1 0.8915 -2.5554 0.5157 41 1 0.8481 -5.5785 -3.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271019678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:29 Heat of formation + Delta-G solvation = 75.869561 kcal Electronic energy + Delta-G solvation = -23210.644287 eV Core-core repulsion = 19731.038766 eV Total energy + Delta-G solvation = -3479.605521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.92118 -40.60258 -37.91700 -37.00574 -35.45029 -33.88048 -32.69623 -32.14159 -31.60676 -29.87700 -28.62674 -27.64420 -24.87821 -24.37914 -23.73337 -22.08381 -20.93832 -20.49661 -19.20731 -18.27737 -17.62670 -16.95136 -16.65763 -16.30486 -16.03993 -15.64306 -15.40473 -15.11875 -14.76168 -14.56144 -14.44256 -14.38496 -14.07353 -13.81954 -13.61764 -13.49603 -13.38327 -13.06218 -12.74854 -12.70426 -12.52121 -12.45236 -12.32135 -12.07288 -11.92013 -11.82152 -11.75296 -11.17233 -10.88234 -10.84577 -10.02376 -9.60365 -9.33971 -8.48549 -8.38934 -6.49638 0.08569 0.30834 1.14117 1.28023 1.33783 1.36490 1.47139 1.73998 2.25536 2.27203 2.57955 2.81217 2.93030 3.59369 3.78532 3.93162 3.94133 4.21525 4.27866 4.32970 4.43415 4.47673 4.51108 4.59102 4.69010 4.76137 4.85508 4.89825 4.93304 4.96515 5.01216 5.11239 5.19113 5.23874 5.26057 5.31901 5.36078 5.51528 5.65343 5.79239 6.01790 6.40390 6.48561 6.57858 6.78207 7.14560 7.35363 8.77341 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002444 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.987808 B =11454.937626 C =12128.626318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.327 4.327 4 C 0.322 3.678 5 N -0.715 5.715 6 C 0.208 3.792 7 H 0.091 0.909 8 C -0.156 4.156 9 C -0.087 4.087 10 C -0.106 4.106 11 C -0.114 4.114 12 C -0.048 4.048 13 Cl -0.075 7.075 14 C -0.111 4.111 15 C -0.096 4.096 16 N -0.403 5.403 17 N -0.356 5.356 18 C 0.245 3.755 19 C -0.546 4.546 20 H 0.022 0.978 21 C 0.019 3.981 22 N -0.940 5.940 23 Si 0.951 3.049 24 H -0.248 1.248 25 H -0.279 1.279 26 H -0.248 1.248 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.166 0.834 31 H 0.398 0.602 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 22.501 8.481 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.359 4.359 4 C 0.065 3.935 5 N -0.358 5.358 6 C 0.103 3.897 7 H 0.109 0.891 8 C -0.215 4.215 9 C -0.088 4.088 10 C -0.124 4.124 11 C -0.133 4.133 12 C -0.074 4.074 13 Cl -0.046 7.046 14 C -0.129 4.129 15 C -0.115 4.115 16 N -0.235 5.235 17 N -0.137 5.137 18 C 0.124 3.876 19 C -0.585 4.585 20 H 0.040 0.960 21 C -0.180 4.180 22 N -0.578 5.578 23 Si 0.772 3.228 24 H -0.172 1.172 25 H -0.204 1.204 26 H -0.171 1.171 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.184 0.816 31 H 0.234 0.766 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.450 21.375 8.304 24.439 hybrid contribution 0.212 -0.457 -0.300 0.586 sum 8.662 20.919 8.005 24.014 Atomic orbital electron populations 1.20507 0.85656 1.04628 1.03560 1.21654 0.96334 0.86774 0.98609 1.20835 0.89784 0.99362 1.25905 1.19405 0.89169 0.88953 0.95941 1.43782 1.03490 1.03293 1.85206 1.19706 0.95398 0.77547 0.97029 0.89113 1.22234 1.02296 1.02073 0.94858 1.20115 0.94509 0.96575 0.97623 1.21048 0.91479 1.00018 0.99901 1.21200 1.00243 0.95066 0.96747 1.21136 0.88568 0.97613 1.00101 1.98371 1.39922 1.82594 1.83680 1.21279 0.90158 1.01030 1.00456 1.21232 0.99725 0.95120 0.95391 1.77253 0.99030 1.11222 1.36027 1.48277 1.02323 1.06611 1.56511 1.19596 0.95905 0.75479 0.96591 1.21297 1.47205 0.98619 0.91350 0.95983 1.25855 0.93885 0.99258 0.99027 1.70038 1.47229 1.18962 1.21595 0.85678 0.80509 0.77664 0.78971 1.17204 1.20409 1.17127 0.90722 0.91170 0.86814 0.81626 0.76646 0.92527 0.89719 0.92381 0.84668 0.83877 0.83110 0.82629 0.94200 0.91411 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 10.11 71.24 0.72 -1.79 16 2 C 0.10 3.70 6.92 41.39 0.29 3.99 16 3 C -0.33 -11.12 9.83 22.11 0.22 -10.90 16 4 C 0.32 12.06 8.14 133.39 1.09 13.15 16 5 N -0.72 -20.16 5.23 -326.97 -1.71 -21.87 16 6 C 0.21 4.17 2.77 44.25 0.12 4.29 16 7 H 0.09 1.78 7.00 -2.39 -0.02 1.76 16 8 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 9 C -0.09 -1.58 4.95 -19.86 -0.10 -1.68 16 10 C -0.11 -1.92 9.05 22.27 0.20 -1.71 16 11 C -0.11 -1.98 9.83 22.29 0.22 -1.77 16 12 C -0.05 -0.83 6.32 22.32 0.14 -0.69 16 13 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 14 C -0.11 -1.71 9.83 22.29 0.22 -1.49 16 15 C -0.10 -1.47 9.67 22.27 0.22 -1.26 16 16 N -0.40 -18.76 12.59 -54.54 -0.69 -19.45 16 17 N -0.36 -16.56 3.59 -338.44 -1.22 -17.78 16 18 C 0.24 11.95 5.06 85.63 0.43 12.38 16 19 C -0.55 -31.99 9.94 25.60 0.25 -31.73 16 20 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 21 C 0.02 1.09 5.47 84.66 0.46 1.55 16 22 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 23 Si 0.95 41.62 27.47 68.60 1.88 43.50 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.25 -10.15 6.54 99.48 0.65 -9.50 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.04 7.07 -2.39 -0.02 2.03 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.17 4.31 7.45 -2.91 -0.02 4.29 16 31 H 0.40 10.94 7.01 -92.71 -0.65 10.29 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.14 2.28 6.93 -2.91 -0.02 2.26 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.16 1.66 8.04 -2.91 -0.02 1.64 16 39 H 0.04 1.98 7.20 -2.39 -0.02 1.96 16 40 H 0.07 2.92 6.47 -2.39 -0.02 2.90 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.54 360.29 4.00 -69.54 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.35 Total: 24.71 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 5.16 Total: -19.62 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -3.31 Total: -116.80 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.50 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -73.54 4.00 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271019678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.408 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds