Wall clock time and date at job start Tue Mar 31 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30877 * 125.88345 * 2 1 4 4 N 1.40090 * 108.21945 * 180.29382 * 3 2 1 5 5 C 1.40209 * 126.05172 * 179.72065 * 4 3 2 6 6 C 1.38829 * 120.05760 * 41.81775 * 5 4 3 7 7 C 1.38113 * 119.94766 * 179.72173 * 6 5 4 8 8 C 1.38386 * 120.05335 * 0.55360 * 7 6 5 9 9 Cl 1.73592 * 119.94723 * 179.74356 * 8 7 6 10 10 C 1.38388 * 120.10337 * 359.72161 * 8 7 6 11 11 C 1.38106 * 120.05965 * 0.02562 * 10 8 7 12 12 C 1.35216 * 107.89039 * 359.71853 * 4 3 2 13 13 C 1.50699 * 126.13656 * 180.02562 * 12 4 3 14 14 C 1.35324 * 107.71719 * 0.02562 * 12 4 3 15 15 C 1.50693 * 126.03454 * 180.02562 * 14 12 4 16 16 N 1.46897 * 109.47560 * 89.99583 * 15 14 12 17 17 C 1.46899 * 111.00317 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47084 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00287 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99967 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00087 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00366 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46842 * 90.00247 * 22 20 18 24 24 H 1.48499 * 109.47247 * 210.00523 * 22 20 18 25 25 H 1.48497 * 109.46825 * 330.00621 * 22 20 18 26 26 H 1.09000 * 109.46873 * 270.17479 * 1 2 3 27 27 H 1.09001 * 109.46937 * 30.16673 * 1 2 3 28 28 H 1.08996 * 109.47764 * 150.17099 * 1 2 3 29 29 H 1.08006 * 120.02809 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.97107 * 180.27162 * 7 6 5 31 31 H 1.08000 * 119.97088 * 179.97438 * 10 8 7 32 32 H 1.07993 * 120.03040 * 180.02562 * 11 10 8 33 33 H 1.09006 * 109.47354 * 274.87146 * 13 12 4 34 34 H 1.08996 * 109.47659 * 34.87814 * 13 12 4 35 35 H 1.09009 * 109.46647 * 154.87661 * 13 12 4 36 36 H 1.09005 * 109.47177 * 329.99596 * 15 14 12 37 37 H 1.09000 * 109.47309 * 209.99609 * 15 14 12 38 38 H 1.00898 * 111.00175 * 303.95416 * 16 15 14 39 39 H 1.08991 * 109.47194 * 300.00151 * 17 16 15 40 40 H 1.09003 * 109.46618 * 59.99892 * 17 16 15 41 41 H 0.96997 * 120.00230 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0604 0.0000 4 7 3.6089 0.6353 -0.0068 5 6 4.7391 1.4651 -0.0146 6 6 4.7742 2.5997 0.7846 7 6 5.8909 3.4124 0.7795 8 6 6.9698 3.1026 -0.0299 9 17 8.3693 4.1295 -0.0390 10 6 6.9349 1.9752 -0.8316 11 6 5.8226 1.1566 -0.8262 12 6 3.6143 -0.7168 -0.0046 13 6 4.8348 -1.6007 -0.0095 14 6 2.3269 -1.1338 0.0028 15 6 1.8590 -2.5662 0.0082 16 7 1.7140 -3.0289 1.3948 17 6 1.2577 -4.4245 1.4392 18 6 1.1215 -4.8630 2.8745 19 1 1.3506 -4.1738 3.6738 20 6 0.7034 -6.1438 3.1673 21 7 0.4239 -6.9830 2.1940 22 14 0.5338 -6.6873 4.9465 23 1 -0.8417 -6.3956 5.4242 24 1 0.7933 -8.1461 5.0453 25 1 1.5151 -5.9521 5.7842 26 1 -0.3633 0.0031 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3634 -0.8914 -0.5111 29 1 3.9304 2.8446 1.4128 30 1 5.9203 4.2928 1.4043 31 1 7.7779 1.7356 -1.4628 32 1 5.7960 0.2767 -1.4517 33 1 5.1750 -1.7449 -1.0350 34 1 5.6267 -1.1301 0.5733 35 1 4.5856 -2.5667 0.4298 36 1 2.5895 -3.1890 -0.5081 37 1 0.8975 -2.6363 -0.5006 38 1 2.5759 -2.9135 1.9065 39 1 0.2921 -4.5070 0.9405 40 1 1.9837 -5.0604 0.9327 41 1 0.1301 -7.8842 2.3999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338135455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:46 Heat of formation + Delta-G solvation = 71.220568 kcal Electronic energy + Delta-G solvation = -23289.847815 eV Core-core repulsion = 19810.040698 eV Total energy + Delta-G solvation = -3479.807116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75941 -40.26891 -37.62724 -37.13549 -35.17900 -34.64410 -33.19094 -32.21008 -31.30962 -29.73673 -28.22468 -27.88524 -25.49416 -24.06597 -23.53718 -23.13207 -20.75054 -20.55286 -18.84519 -18.42799 -17.75834 -17.04279 -16.71545 -16.09307 -16.01344 -15.69361 -15.19855 -14.96199 -14.84580 -14.67332 -14.52470 -14.21992 -14.15847 -13.96556 -13.53685 -13.47283 -13.32304 -13.10985 -12.98215 -12.73582 -12.66709 -12.58957 -12.50374 -12.39119 -11.98746 -11.89788 -11.59017 -11.25749 -10.64123 -10.60717 -10.26321 -9.79682 -9.18676 -8.96570 -8.19161 -6.29541 -0.36385 0.08828 0.85894 1.00738 1.35698 1.42869 1.44316 1.55083 1.62412 2.38200 2.42660 3.13999 3.45597 3.57287 3.70460 3.71045 3.88338 3.95155 4.04556 4.15486 4.22462 4.34228 4.41915 4.56618 4.62822 4.72013 4.78027 4.78529 4.85508 4.91493 5.00774 5.03576 5.07110 5.10203 5.19494 5.24601 5.34152 5.42967 5.64071 5.67138 6.06575 6.15426 6.51253 6.61857 6.76337 6.92927 7.41074 8.91873 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.002439 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.344133 B =11475.935270 C =12086.252845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.095 3.905 3 N -0.321 5.321 4 N -0.335 5.335 5 C 0.140 3.860 6 C -0.109 4.109 7 C -0.088 4.088 8 C -0.043 4.043 9 Cl -0.058 7.058 10 C -0.082 4.082 11 C -0.114 4.114 12 C 0.095 3.905 13 C -0.094 4.094 14 C -0.231 4.231 15 C 0.143 3.857 16 N -0.682 5.682 17 C 0.210 3.790 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.330 0.670 39 H 0.003 0.997 40 H -0.035 1.035 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.999 20.638 -7.631 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 N -0.141 5.141 4 N -0.112 5.112 5 C 0.049 3.951 6 C -0.129 4.129 7 C -0.107 4.107 8 C -0.070 4.070 9 Cl -0.029 7.029 10 C -0.101 4.101 11 C -0.134 4.134 12 C -0.030 4.030 13 C -0.152 4.152 14 C -0.242 4.242 15 C 0.013 3.987 16 N -0.312 5.312 17 C 0.082 3.918 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.195 4.195 21 N -0.572 5.572 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.186 0.814 32 H 0.171 0.829 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.021 0.979 40 H -0.018 1.018 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.522 22.127 -7.600 27.536 hybrid contribution 0.313 -1.779 0.536 1.884 sum 14.835 20.348 -7.064 26.154 Atomic orbital electron populations 1.20234 0.85062 1.03787 1.03625 1.22700 0.98101 0.89905 0.96494 1.77368 0.85990 1.22732 1.28010 1.45637 1.04098 1.03610 1.57836 1.17837 0.85381 0.92990 0.98849 1.21041 0.99182 0.94185 0.98514 1.21116 0.90737 1.00301 0.98518 1.21115 0.90320 0.94826 1.00744 1.98391 1.39881 1.66824 1.97758 1.21162 0.98651 0.92027 0.98276 1.21217 0.92242 1.01856 0.98078 1.21354 0.97792 0.83853 0.99974 1.20684 0.92037 0.97618 1.04834 1.19802 0.91595 0.96118 1.16656 1.20029 0.99450 0.88961 0.90256 1.60565 1.35820 1.22485 1.12368 1.19201 0.93380 0.83413 0.95769 1.21513 1.45032 0.97346 0.93158 0.92182 1.25888 0.94940 0.96616 1.02062 1.70079 1.46746 1.06661 1.33741 0.85391 0.78716 0.77245 0.79285 1.20013 1.20648 1.18968 0.90201 0.89733 0.89884 0.84996 0.82276 0.81381 0.82916 0.87676 0.89384 0.90086 0.95134 0.91269 0.85319 0.97872 1.01764 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.26 71.23 0.73 -1.11 16 2 C 0.09 3.03 7.22 43.11 0.31 3.34 16 3 N -0.32 -10.29 12.41 -47.34 -0.59 -10.88 16 4 N -0.34 -9.44 3.70 -175.98 -0.65 -10.09 16 5 C 0.14 3.17 6.12 38.09 0.23 3.40 16 6 C -0.11 -2.23 9.84 22.38 0.22 -2.01 16 7 C -0.09 -1.37 9.82 22.28 0.22 -1.15 16 8 C -0.04 -0.62 6.32 22.34 0.14 -0.48 16 9 Cl -0.06 -0.75 28.95 -2.72 -0.08 -0.83 16 10 C -0.08 -1.08 9.82 22.27 0.22 -0.86 16 11 C -0.11 -1.87 8.56 22.38 0.19 -1.68 16 12 C 0.09 2.66 6.75 41.36 0.28 2.94 16 13 C -0.09 -1.93 8.45 71.24 0.60 -1.33 16 14 C -0.23 -7.46 5.61 -20.13 -0.11 -7.57 16 15 C 0.14 5.12 5.55 85.56 0.48 5.59 16 16 N -0.68 -29.43 6.48 -522.01 -3.38 -32.81 16 17 C 0.21 11.10 5.44 85.56 0.47 11.56 16 18 C -0.53 -30.23 9.32 25.60 0.24 -30.00 16 19 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 22 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.17 7.25 -2.39 -0.02 2.16 16 29 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.15 2.08 6.64 -2.91 -0.02 2.06 16 33 H 0.10 1.62 7.63 -2.38 -0.02 1.60 16 34 H 0.09 1.55 7.51 -2.39 -0.02 1.53 16 35 H 0.08 1.87 7.55 -2.38 -0.02 1.85 16 36 H 0.03 1.05 7.66 -2.38 -0.02 1.04 16 37 H 0.07 2.50 7.25 -2.39 -0.02 2.49 16 38 H 0.33 13.81 8.72 -89.70 -0.78 13.03 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H -0.04 -1.98 8.14 -2.39 -0.02 -2.00 16 41 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -67.96 363.30 2.56 -65.40 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.27 Total: 17.19 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.68 Total: -18.72 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -4.34 Total: -109.25 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -67.96 2.56 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338135455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.617 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds