Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 H 1.09003 * 109.46654 * 55.80217 * 3 2 1 5 5 C 1.50699 * 109.47252 * 175.79637 * 3 2 1 6 6 H 1.08009 * 119.99654 * 119.99692 * 5 3 2 7 7 C 1.37870 * 120.00405 * 300.00546 * 5 3 2 8 8 N 1.31512 * 120.00038 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00030 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47090 * 90.00075 * 9 7 5 11 11 H 1.48500 * 109.47285 * 210.00462 * 9 7 5 12 12 H 1.48506 * 109.47105 * 330.00530 * 9 7 5 13 13 N 1.46899 * 109.47020 * 295.80084 * 3 2 1 14 14 C 1.46901 * 111.00080 * 298.57186 * 13 3 2 15 15 C 1.50694 * 109.47013 * 179.47775 * 14 13 3 16 16 C 1.35087 * 126.07483 * 259.68753 * 15 14 13 17 17 N 1.35037 * 107.97807 * 179.87428 * 16 15 14 18 18 H 0.97002 * 125.92855 * 180.14740 * 17 16 15 19 19 N 1.40067 * 108.14151 * 0.39066 * 17 16 15 20 20 C 1.31626 * 108.10646 * 359.75952 * 19 17 16 21 21 C 1.48417 * 126.03742 * 180.02562 * 20 19 17 22 22 C 1.39329 * 120.10396 * 144.69267 * 21 20 19 23 23 C 1.38000 * 119.88756 * 179.79014 * 22 21 20 24 24 C 1.38435 * 120.11048 * 0.49370 * 23 22 21 25 25 Cl 1.73605 * 119.89466 * 179.76383 * 24 23 22 26 26 C 1.38439 * 120.21304 * 359.74307 * 24 23 22 27 27 C 1.38001 * 120.10667 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47118 * 185.65501 * 1 2 3 29 29 H 1.08995 * 109.47226 * 305.65627 * 1 2 3 30 30 H 1.09004 * 109.46957 * 65.65546 * 1 2 3 31 31 H 1.08996 * 109.47633 * 239.99769 * 2 1 3 32 32 H 1.09003 * 109.47051 * 119.99840 * 2 1 3 33 33 H 0.97006 * 119.99566 * 179.97438 * 8 7 5 34 34 H 1.00906 * 110.99703 * 62.52459 * 13 3 2 35 35 H 1.09004 * 109.46754 * 299.48020 * 14 13 3 36 36 H 1.08998 * 109.47026 * 59.47524 * 14 13 3 37 37 H 1.08005 * 126.01112 * 0.02562 * 16 15 14 38 38 H 1.07998 * 120.05689 * 0.03108 * 22 21 20 39 39 H 1.08001 * 119.94524 * 180.23504 * 23 22 21 40 40 H 1.07994 * 119.94197 * 180.02562 * 26 24 23 41 41 H 1.07991 * 120.05389 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9776 0.8500 5 6 3.5434 1.4439 0.1041 6 1 4.1384 1.8921 -0.6779 7 6 4.1592 0.8728 1.1975 8 7 5.4712 0.8736 1.2881 9 14 3.1300 0.0981 2.5503 10 1 2.9042 -1.3366 2.2404 11 1 3.8449 0.2180 3.8464 12 1 1.8227 0.7969 2.6396 13 7 1.6349 2.1051 -1.2469 14 6 2.2162 1.4298 -2.4148 15 6 1.7690 2.1283 -3.6730 16 6 0.7784 1.7245 -4.4979 17 7 0.6856 2.6177 -5.5063 18 1 0.0571 2.5798 -6.2442 19 7 1.6581 3.6054 -5.3050 20 6 2.3138 3.3149 -4.2012 21 6 3.4296 4.0994 -3.6163 22 6 3.5661 4.1960 -2.2331 23 6 4.6078 4.9231 -1.6940 24 6 5.5104 5.5643 -2.5251 25 17 6.8152 6.4825 -1.8409 26 6 5.3761 5.4753 -3.9001 27 6 4.3404 4.7467 -4.4487 28 1 -0.3633 -1.0227 0.1013 29 1 -0.3633 0.5990 0.8350 30 1 -0.3633 0.4236 -0.9363 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9044 0.4721 2.0576 34 1 0.6297 2.1537 -1.3205 35 1 3.3037 1.4612 -2.3486 36 1 1.8834 0.3921 -2.4374 37 1 0.1664 0.8436 -4.3716 38 1 2.8602 3.6995 -1.5839 39 1 4.7167 4.9955 -0.6219 40 1 6.0829 5.9770 -4.5443 41 1 4.2362 4.6782 -5.5214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358276177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = 80.173392 kcal Electronic energy + Delta-G solvation = -24627.073141 eV Core-core repulsion = 21147.654249 eV Total energy + Delta-G solvation = -3479.418893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17091 -39.88083 -38.61997 -37.36691 -34.51286 -33.77075 -33.10173 -31.83063 -30.88777 -30.38201 -28.77749 -25.90341 -24.42706 -24.12206 -23.62253 -21.66816 -21.21151 -20.67148 -19.08454 -18.15127 -17.85780 -17.00234 -16.38576 -16.23093 -16.12374 -15.74503 -15.48758 -14.93390 -14.81336 -14.46874 -14.45229 -14.30144 -13.98880 -13.82659 -13.57615 -13.39503 -12.87413 -12.63450 -12.53221 -12.48483 -12.37989 -12.22975 -12.13348 -11.75191 -11.62791 -11.43832 -11.14798 -10.92372 -10.68912 -10.62822 -9.87521 -9.57250 -9.15935 -8.86466 -8.14152 -6.14855 -0.03815 0.48288 1.05626 1.19973 1.34841 1.41764 1.49953 1.79518 2.04008 2.40882 2.86012 3.20241 3.54420 3.80301 3.95449 4.05567 4.11902 4.28933 4.38111 4.44308 4.46855 4.54209 4.54894 4.63368 4.82865 4.87707 4.91511 5.05345 5.17867 5.19369 5.23510 5.26414 5.26859 5.37915 5.48620 5.63412 5.66397 5.71934 5.76759 6.01742 6.26530 6.49212 6.51388 6.74226 6.95767 7.10938 7.49747 9.01280 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.005887 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.232604 B = 4754.834124 C = 7464.293330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C 0.190 3.810 4 H 0.034 0.966 5 C -0.492 4.492 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.311 1.311 12 H -0.245 1.245 13 N -0.667 5.667 14 C 0.148 3.852 15 C -0.236 4.236 16 C 0.083 3.917 17 N -0.460 5.460 18 H 0.456 0.544 19 N -0.310 5.310 20 C 0.118 3.882 21 C -0.029 4.029 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.035 4.035 25 Cl -0.075 7.075 26 C -0.120 4.120 27 C -0.087 4.087 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.259 0.741 34 H 0.337 0.663 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.217 0.783 38 H 0.174 0.826 39 H 0.121 0.879 40 H 0.157 0.843 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 3.280 -12.698 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.081 3.919 4 H 0.052 0.948 5 C -0.530 4.530 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.240 1.240 12 H -0.169 1.169 13 N -0.297 5.297 14 C 0.018 3.982 15 C -0.248 4.248 16 C -0.065 4.065 17 N -0.170 5.170 18 H 0.304 0.696 19 N -0.135 5.135 20 C -0.046 4.046 21 C -0.032 4.032 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.062 4.062 25 Cl -0.047 7.047 26 C -0.138 4.138 27 C -0.107 4.107 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.234 0.766 38 H 0.191 0.809 39 H 0.139 0.861 40 H 0.174 0.826 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.261 4.596 -13.498 17.567 hybrid contribution -0.188 -1.818 1.496 2.362 sum -10.449 2.778 -12.002 16.154 Atomic orbital electron populations 1.21781 0.94426 1.01836 1.02256 1.22527 0.96610 1.00743 1.00559 1.19498 0.93862 0.89142 0.89442 0.94780 1.21328 0.91182 1.34957 1.05569 0.92895 1.25660 0.95409 0.97012 1.00258 1.70053 1.10146 1.47700 1.31070 0.86010 0.79787 0.79212 0.78101 1.20264 1.23967 1.16922 1.60334 1.13892 1.54166 1.01296 1.19899 0.98928 0.93973 0.85381 1.20254 1.03217 0.99528 1.01775 1.22795 0.98447 0.96654 0.88606 1.46140 1.29248 1.18596 1.23021 0.69649 1.77437 1.04761 1.12700 1.18586 1.20552 0.95887 0.95030 0.93141 1.18071 0.94137 0.98095 0.92850 1.22334 0.97999 0.94992 0.95235 1.21102 0.94880 0.98057 1.00103 1.21179 0.92027 0.98899 0.94089 1.98339 1.48192 1.72626 1.85500 1.21095 0.99587 1.00803 0.92348 1.21295 0.93365 0.95637 1.00364 0.92253 0.93129 0.90994 0.92065 0.95049 0.93185 0.84473 0.93132 0.93853 0.76602 0.80906 0.86063 0.82561 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.52 71.98 0.69 -3.22 16 2 C -0.17 -6.04 4.71 30.60 0.14 -5.90 16 3 C 0.19 7.83 2.15 44.17 0.09 7.93 16 4 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 5 C -0.49 -25.76 8.51 25.60 0.22 -25.55 16 6 H 0.05 3.10 6.51 -2.91 -0.02 3.08 16 7 C 0.01 0.74 5.45 84.65 0.46 1.20 16 8 N -0.95 -58.10 13.96 21.44 0.30 -57.80 16 9 Si 0.94 43.80 24.41 68.60 1.67 45.47 16 10 H -0.28 -12.43 6.83 99.48 0.68 -11.75 16 11 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.25 -10.44 6.53 99.48 0.65 -9.79 16 13 N -0.67 -22.97 3.94 -499.46 -1.97 -24.94 16 14 C 0.15 4.96 4.43 85.55 0.38 5.34 16 15 C -0.24 -6.74 5.58 -19.95 -0.11 -6.85 16 16 C 0.08 1.61 11.88 83.47 0.99 2.60 16 17 N -0.46 -8.72 7.35 -57.67 -0.42 -9.14 16 18 H 0.46 4.83 8.96 -213.34 -1.91 2.92 16 19 N -0.31 -8.66 12.70 -48.16 -0.61 -9.28 16 20 C 0.12 3.73 6.74 42.53 0.29 4.02 16 21 C -0.03 -1.01 5.80 -20.04 -0.12 -1.12 16 22 C -0.09 -3.28 8.51 22.48 0.19 -3.09 16 23 C -0.12 -4.65 9.81 22.26 0.22 -4.43 16 24 C -0.03 -1.16 6.32 22.36 0.14 -1.02 16 25 Cl -0.08 -2.30 28.95 -2.72 -0.08 -2.38 16 26 C -0.12 -3.47 9.81 22.26 0.22 -3.25 16 27 C -0.09 -2.61 9.75 22.48 0.22 -2.39 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.57 7.09 -2.39 -0.02 1.55 16 31 H 0.06 2.23 6.21 -2.39 -0.01 2.21 16 32 H 0.03 1.28 3.22 -2.39 -0.01 1.27 16 33 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.34 9.69 7.32 -89.69 -0.66 9.03 16 35 H 0.05 2.16 6.04 -2.38 -0.01 2.15 16 36 H 0.04 1.34 6.21 -2.39 -0.01 1.33 16 37 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.17 7.03 4.68 -2.91 -0.01 7.01 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.15 3.74 8.06 -2.92 -0.02 3.72 16 Total: -1.00 -67.57 341.02 1.36 -66.21 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -1.55 Total: 27.58 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.02 Total: -35.73 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -2.70 Total: -101.15 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -67.57 1.36 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358276177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.381 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds