Wall clock time and date at job start Tue Mar 31 2020 12:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30743 * 126.35693 * 2 1 4 4 N 1.28422 * 110.64018 * 179.97438 * 3 2 1 5 5 N 1.28958 * 110.20251 * 359.70757 * 4 3 2 6 6 N 1.35050 * 126.36491 * 179.97438 * 2 1 3 7 7 C 1.40319 * 127.38661 * 0.03031 * 6 2 1 8 8 C 1.38859 * 120.00697 * 325.00533 * 7 6 2 9 9 C 1.38173 * 120.08681 * 179.97438 * 8 7 6 10 10 C 1.38339 * 120.11280 * 0.02562 * 9 8 7 11 11 F 1.35098 * 119.99079 * 179.97438 * 10 9 8 12 12 C 1.39080 * 120.01615 * 359.96861 * 10 9 8 13 13 N 1.40040 * 120.04443 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99955 * 204.79921 * 13 12 10 15 15 O 1.21287 * 120.00243 * 5.53043 * 14 13 12 16 16 C 1.50699 * 119.99685 * 185.53555 * 14 13 12 17 17 C 1.53004 * 109.46828 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46998 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99525 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00568 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99655 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47460 * 120.00276 * 22 20 18 25 25 H 1.48502 * 109.47338 * 240.00572 * 22 20 18 26 26 C 1.38713 * 120.00905 * 144.95829 * 7 6 2 27 27 H 1.09000 * 109.46841 * 270.03640 * 1 2 3 28 28 H 1.08996 * 109.47338 * 30.04516 * 1 2 3 29 29 H 1.09005 * 109.46644 * 150.04147 * 1 2 3 30 30 H 1.07993 * 119.95282 * 0.25503 * 8 7 6 31 31 H 1.07995 * 119.94015 * 179.97438 * 9 8 7 32 32 H 0.96994 * 120.00159 * 24.80167 * 13 12 10 33 33 H 1.08998 * 109.47306 * 299.99577 * 16 14 13 34 34 H 1.08997 * 109.47494 * 60.00124 * 16 14 13 35 35 H 1.08997 * 109.47398 * 299.99654 * 17 16 14 36 36 H 1.08997 * 109.47274 * 60.00228 * 17 16 14 37 37 H 0.96999 * 120.00663 * 179.97438 * 21 20 18 38 38 H 1.07997 * 120.05088 * 0.04794 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2821 1.0529 0.0000 4 7 3.5183 0.7051 0.0005 5 7 3.6192 -0.5806 0.0071 6 7 2.3078 -1.0875 0.0005 7 6 1.9152 -2.4346 0.0005 8 6 0.7749 -2.8256 0.6897 9 6 0.3865 -4.1516 0.6904 10 6 1.1325 -5.0937 0.0051 11 9 0.7507 -6.3897 0.0078 12 6 2.2753 -4.7071 -0.6868 13 7 3.0307 -5.6602 -1.3812 14 6 4.3389 -5.4401 -1.6193 15 8 4.8858 -4.4660 -1.1469 16 6 5.1221 -6.4043 -2.4725 17 6 6.5709 -5.9254 -2.5845 18 6 7.3543 -6.8900 -3.4372 19 1 6.8674 -7.7575 -3.8575 20 6 8.6924 -6.6643 -3.6815 21 7 9.2852 -5.6076 -3.1700 22 14 9.6632 -7.8594 -4.7390 23 1 8.7716 -8.9576 -5.1909 24 1 10.2065 -7.1451 -5.9221 25 1 10.7833 -8.4257 -3.9452 26 6 2.6655 -3.3759 -0.6887 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8895 -0.5145 29 1 -0.3633 -0.8904 -0.5132 30 1 0.1884 -2.0916 1.2221 31 1 -0.5006 -4.4532 1.2275 32 1 2.6124 -6.4787 -1.6908 33 1 5.1004 -7.3938 -2.0159 34 1 4.6781 -6.4531 -3.4667 35 1 6.5923 -4.9360 -3.0413 36 1 7.0153 -5.8763 -1.5904 37 1 10.2266 -5.4490 -3.3416 38 1 3.5526 -3.0731 -1.2251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361731718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:46 Heat of formation + Delta-G solvation = 65.117587 kcal Electronic energy + Delta-G solvation = -25587.654364 eV Core-core repulsion = 21575.705884 eV Total energy + Delta-G solvation = -4011.948480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.32589 -43.39220 -40.65275 -38.94113 -35.83531 -34.41736 -33.64738 -33.56125 -31.48381 -30.58283 -29.65424 -29.01893 -26.00539 -24.97222 -23.84808 -22.62200 -22.15334 -21.30045 -20.01035 -18.97074 -18.14168 -17.45011 -16.89388 -16.75661 -16.28831 -16.06719 -15.57235 -15.33199 -15.21037 -14.52566 -14.38123 -14.30695 -13.97947 -13.74418 -13.63626 -13.50624 -13.20474 -12.79728 -12.57422 -12.48206 -12.26457 -11.95694 -11.57501 -11.29118 -11.18189 -11.01132 -10.72827 -10.64700 -10.37958 -10.11321 -9.84019 -9.47616 -9.18375 -9.08928 -8.45786 -8.38528 -6.02824 -4.08375 0.03649 0.65809 1.07171 1.50402 2.05768 2.64380 2.85309 3.11490 3.28848 3.36341 3.38966 3.56522 3.68151 3.96873 4.23784 4.37568 4.40438 4.46067 4.75577 4.79637 4.90483 4.99031 5.03879 5.13849 5.29712 5.32430 5.41699 5.43266 5.61813 5.77855 5.83608 5.99007 6.02555 6.20450 6.50968 6.66413 7.28927 7.64705 7.71894 7.96459 8.17577 8.24409 8.34555 8.99200 9.56047 11.07922 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.003107 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.364985 B = 9010.815184 C =10772.396257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.246 3.754 3 N -0.332 5.332 4 N -0.037 5.037 5 N -0.058 5.058 6 N -0.329 5.329 7 C 0.138 3.862 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.072 3.928 11 F -0.129 7.129 12 C 0.156 3.844 13 N -0.679 5.679 14 C 0.509 3.491 15 O -0.499 6.499 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.887 5.887 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.091 4.091 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.417 0.583 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.081 4.023 7.498 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 N -0.183 5.183 4 N -0.031 5.031 5 N -0.042 5.042 6 N -0.120 5.120 7 C 0.046 3.954 8 C -0.141 4.141 9 C -0.128 4.128 10 C 0.049 3.951 11 F -0.108 7.108 12 C 0.058 3.942 13 N -0.324 5.324 14 C 0.299 3.701 15 O -0.371 6.371 16 C -0.167 4.167 17 C -0.002 4.002 18 C -0.569 4.569 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.114 4.114 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -24.110 5.460 7.768 25.913 hybrid contribution -0.263 -1.925 -0.655 2.050 sum -24.374 3.535 7.113 25.635 Atomic orbital electron populations 1.20668 0.82154 1.06151 1.05234 1.25871 0.98223 0.82344 0.96551 1.74465 0.96457 1.24679 1.22660 1.78103 1.11092 1.04195 1.09718 1.82979 0.96300 1.04609 1.20292 1.48886 1.06077 1.06255 1.50786 1.17258 0.96885 0.79518 1.01775 1.20779 0.96415 0.96553 1.00380 1.20748 1.00862 0.91191 1.00049 1.17481 0.96654 0.79380 1.01598 1.91518 1.90707 1.33569 1.94974 1.17614 0.91696 0.89649 0.95285 1.44033 1.10667 1.21514 1.56183 1.22101 0.79842 0.87866 0.80258 1.90698 1.68496 1.29579 1.48340 1.21963 0.99774 0.97263 0.97714 1.18952 0.86029 0.96995 0.98228 1.21189 0.94761 1.09195 1.31718 0.92447 1.25025 0.97876 0.95428 0.95995 1.69995 1.11360 1.26887 1.44260 0.86521 0.80082 0.81047 0.80223 1.19730 1.20959 1.20950 1.21252 1.01500 0.89459 0.99157 0.88006 0.87445 0.88778 0.83748 0.82826 0.74603 0.89460 0.89386 0.95611 0.95575 0.92851 0.80915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 8.74 36.01 0.31 -0.04 16 2 C 0.25 2.61 7.97 -155.20 -1.24 1.38 16 3 N -0.33 -4.63 12.15 32.75 0.40 -4.23 16 4 N -0.04 -0.61 13.39 60.35 0.81 0.20 16 5 N -0.06 -0.97 13.76 60.35 0.83 -0.14 16 6 N -0.33 -4.27 3.78 -7.97 -0.03 -4.30 16 7 C 0.14 1.57 6.35 -83.57 -0.53 1.04 16 8 C -0.12 -0.86 8.42 -39.38 -0.33 -1.20 16 9 C -0.11 -0.74 10.01 -39.57 -0.40 -1.13 16 10 C 0.07 0.69 7.31 -39.23 -0.29 0.40 16 11 F -0.13 -1.22 16.81 2.25 0.04 -1.19 16 12 C 0.16 1.93 6.44 -83.62 -0.54 1.39 16 13 N -0.68 -8.75 5.31 -9.82 -0.05 -8.81 16 14 C 0.51 8.88 7.63 -10.98 -0.08 8.80 16 15 O -0.50 -10.74 13.15 5.55 0.07 -10.66 16 16 C -0.13 -2.36 5.64 -27.88 -0.16 -2.52 16 17 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 18 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.09 -1.26 8.49 -39.23 -0.33 -1.59 16 27 H 0.10 0.20 7.84 -51.93 -0.41 -0.21 16 28 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.27 7.02 -51.93 -0.36 -0.09 16 30 H 0.14 0.58 6.25 -52.49 -0.33 0.25 16 31 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.42 4.05 8.45 -40.82 -0.34 3.71 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.17 3.02 5.79 -52.49 -0.30 2.71 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -36.10 338.38 -5.05 -41.15 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -3.82 Total: -1.20 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.11 Total: -5.99 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 2.69 Total: -43.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.10 -5.05 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361731718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.269 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds