Wall clock time and date at job start Tue Mar 31 2020 12:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34948 * 125.52678 * 2 1 4 4 C 1.41210 * 108.24504 * 180.02562 * 3 2 1 5 5 N 1.32937 * 126.38075 * 179.97438 * 4 3 2 6 6 C 1.33818 * 119.99804 * 0.03409 * 5 4 3 7 7 O 1.21848 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00127 * 180.02562 * 6 5 4 9 9 C 1.39897 * 120.00481 * 184.67477 * 8 6 5 10 10 C 1.38919 * 120.48230 * 145.02431 * 9 8 6 11 11 N 1.31772 * 120.71597 * 179.97438 * 10 9 8 12 12 C 1.31874 * 121.82600 * 0.02562 * 11 10 9 13 13 C 1.38482 * 120.88048 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.40185 * 179.97438 * 13 12 11 15 15 C 1.38738 * 119.18901 * 359.97426 * 13 12 11 16 16 N 1.37425 * 107.24328 * 0.26407 * 4 3 2 17 17 H 0.97001 * 126.36889 * 179.69386 * 16 4 3 18 18 N 1.36456 * 125.52209 * 180.02562 * 2 1 3 19 19 C 1.46500 * 125.85575 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47123 * 84.99310 * 19 18 2 21 21 H 1.08001 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00372 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46751 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47361 * 119.99517 * 24 22 20 27 27 H 1.48496 * 109.47320 * 240.00210 * 24 22 20 28 28 H 1.09002 * 109.46802 * 89.97667 * 1 2 3 29 29 H 1.08991 * 109.47056 * 209.97579 * 1 2 3 30 30 H 1.08993 * 109.46717 * 329.98205 * 1 2 3 31 31 H 1.08000 * 125.87874 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00119 * 4.66647 * 8 6 5 33 33 H 1.08000 * 119.63829 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.56095 * 179.97438 * 12 11 10 35 35 H 1.08003 * 120.82723 * 180.02562 * 15 13 12 36 36 H 1.08997 * 109.47362 * 204.99584 * 19 18 2 37 37 H 1.09001 * 109.47166 * 324.99882 * 19 18 2 38 38 H 0.96999 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6396 0.6788 -0.0006 5 7 4.7104 1.4665 -0.0013 6 6 4.5627 2.7965 -0.0007 7 8 3.4466 3.2855 -0.0001 8 7 5.6483 3.5951 -0.0019 9 6 5.4964 4.9823 0.0974 10 6 6.4279 5.7454 0.7901 11 7 6.2896 7.0523 0.8861 12 6 5.2727 7.6863 0.3358 13 6 4.3022 6.9952 -0.3701 14 9 3.2641 7.6545 -0.9296 15 6 4.4090 5.6177 -0.4958 16 7 3.6387 -0.6955 -0.0070 17 1 4.4193 -1.2712 -0.0131 18 7 2.2999 -1.1106 -0.0005 19 6 1.8321 -2.4989 -0.0016 20 6 1.5547 -2.9343 -1.4175 21 1 1.7116 -2.2460 -2.2348 22 6 1.1006 -4.2116 -1.6695 23 7 0.9100 -5.0500 -0.6744 24 14 0.7574 -4.7516 -3.4245 25 1 1.0498 -3.6305 -4.3534 26 1 1.6191 -5.9128 -3.7626 27 1 -0.6700 -5.1404 -3.5526 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3632 0.8898 0.5141 31 1 1.9469 2.1219 0.0004 32 1 6.5350 3.2081 -0.0715 33 1 7.2745 5.2622 1.2550 34 1 5.1952 8.7587 0.4376 35 1 3.6674 5.0525 -1.0408 36 1 2.5985 -3.1410 0.4324 37 1 0.9181 -2.5748 0.5874 38 1 0.5901 -5.9485 -0.8516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439629063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:34 Heat of formation + Delta-G solvation = 64.841411 kcal Electronic energy + Delta-G solvation = -25250.884060 eV Core-core repulsion = 21238.923604 eV Total energy + Delta-G solvation = -4011.960456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.98958 -41.09294 -40.49106 -38.83789 -35.26742 -34.23399 -33.27362 -32.41869 -31.77266 -30.89376 -29.69324 -27.63257 -26.81643 -24.35579 -23.61844 -23.01146 -21.71272 -20.13344 -19.71787 -18.36927 -17.53771 -17.16019 -17.06409 -16.84001 -16.22542 -15.85901 -15.73428 -15.18426 -14.99225 -14.70638 -14.34596 -14.13763 -13.92910 -13.44135 -13.17346 -13.04840 -12.89831 -12.75714 -12.63006 -12.33202 -12.12802 -11.90320 -11.43248 -11.13234 -10.85764 -10.59758 -10.42219 -10.14978 -9.75371 -9.57018 -9.34664 -8.99740 -8.98820 -8.55982 -8.31941 -7.06764 -6.56807 -4.72142 0.81967 1.07814 1.60807 1.90007 2.91550 2.99664 3.09741 3.12176 3.15267 3.56529 3.98753 4.01397 4.25328 4.36965 4.44924 4.70524 4.75046 4.86353 4.92268 4.96005 5.43623 5.44880 5.59654 5.74687 5.78739 5.86799 6.03232 6.07411 6.21077 6.32254 6.40959 6.53063 6.63572 6.88129 7.15288 7.32009 7.44129 7.48701 7.64958 7.70842 7.97155 8.15809 8.37056 8.98754 9.27190 10.46295 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.002435 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.211793 B =11498.014076 C =11819.698238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.193 3.807 3 C -0.334 4.334 4 C 0.488 3.512 5 N -0.709 5.709 6 C 0.683 3.317 7 O -0.614 6.614 8 N -0.662 5.662 9 C 0.165 3.835 10 C 0.053 3.947 11 N -0.439 5.439 12 C 0.037 3.963 13 C 0.070 3.930 14 F -0.131 7.131 15 C -0.122 4.122 16 N -0.466 5.466 17 H 0.446 0.554 18 N -0.339 5.339 19 C 0.253 3.747 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.278 1.278 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.184 0.816 32 H 0.414 0.586 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 13.133 2.187 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 C -0.366 4.366 4 C 0.236 3.764 5 N -0.474 5.474 6 C 0.383 3.617 7 O -0.495 6.495 8 N -0.308 5.308 9 C 0.064 3.936 10 C -0.109 4.109 11 N -0.146 5.146 12 C -0.123 4.123 13 C 0.047 3.953 14 F -0.109 7.109 15 C -0.151 4.151 16 N -0.187 5.187 17 H 0.293 0.707 18 N -0.125 5.125 19 C 0.137 3.863 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.203 1.203 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.201 0.799 32 H 0.251 0.749 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.379 12.994 2.695 14.319 hybrid contribution -0.703 -1.200 -1.524 2.063 sum 4.676 11.793 1.171 12.740 Atomic orbital electron populations 1.20614 0.86237 1.03976 1.04390 1.21337 0.94574 0.85487 0.92034 1.22177 0.90981 1.00373 1.23060 1.18596 0.90938 0.82044 0.84787 1.67961 1.28807 1.03060 1.47621 1.16623 0.82417 0.85311 0.77331 1.90752 1.23974 1.78135 1.56679 1.42260 1.10441 1.02314 1.75748 1.18487 0.95822 0.84237 0.95081 1.22656 1.00504 0.89528 0.98171 1.67631 1.20520 1.09428 1.17027 1.22702 0.90748 1.01027 0.97778 1.18697 0.87427 0.90722 0.98418 1.91515 1.55766 1.80559 1.83088 1.21915 1.00554 0.92329 1.00273 1.44431 0.99068 1.04924 1.70303 0.70651 1.47988 0.92506 1.08293 1.63707 1.20074 0.96530 0.70054 0.99645 1.21400 1.47687 0.98782 0.91569 0.91220 1.24949 0.94222 0.95783 0.98492 1.69902 1.43943 1.06944 1.31441 0.86253 0.78353 0.78883 0.83015 1.19385 1.20486 1.20342 0.89037 0.90013 0.89476 0.79913 0.74927 0.81943 0.81888 0.81716 0.93035 0.91338 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.09 36.01 0.36 -0.89 16 2 C 0.19 3.26 6.92 -81.70 -0.57 2.69 16 3 C -0.33 -6.06 9.41 -39.62 -0.37 -6.44 16 4 C 0.49 9.03 8.07 -155.28 -1.25 7.78 16 5 N -0.71 -13.01 10.59 -15.79 -0.17 -13.17 16 6 C 0.68 12.33 8.33 -87.78 -0.73 11.60 16 7 O -0.61 -12.21 10.73 5.06 0.05 -12.16 16 8 N -0.66 -9.34 5.35 -14.32 -0.08 -9.42 16 9 C 0.16 2.22 6.32 -83.56 -0.53 1.69 16 10 C 0.05 0.61 11.12 -17.33 -0.19 0.42 16 11 N -0.44 -5.36 10.35 -13.02 -0.13 -5.49 16 12 C 0.04 0.42 11.17 -17.44 -0.19 0.23 16 13 C 0.07 0.90 7.34 -39.31 -0.29 0.61 16 14 F -0.13 -1.70 17.28 2.25 0.04 -1.66 16 15 C -0.12 -1.76 8.79 -39.03 -0.34 -2.10 16 16 N -0.47 -7.99 7.38 31.33 0.23 -7.76 16 17 H 0.45 6.63 8.96 -182.55 -1.64 5.00 16 18 N -0.34 -6.14 3.63 -58.04 -0.21 -6.35 16 19 C 0.25 5.11 5.93 -5.19 -0.03 5.08 16 20 C -0.56 -12.78 9.39 -34.44 -0.32 -13.10 16 21 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -21.86 13.29 55.43 0.74 -21.13 16 24 Si 0.91 18.75 29.54 -169.99 -5.02 13.73 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.18 3.46 5.77 -52.49 -0.30 3.16 16 32 H 0.41 4.72 8.92 -40.82 -0.36 4.36 16 33 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.17 2.69 6.31 -52.48 -0.33 2.36 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.39 7.18 -51.93 -0.37 1.02 16 38 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 LS Contribution 338.76 15.07 5.10 5.10 Total: -1.00 -28.18 338.76 -9.04 -37.22 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.04 Total: 11.93 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -4.56 Total: 9.15 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.38 Total: -63.32 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.05 Total: -12.16 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.18 -9.04 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439629063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.065 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds