Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34948 * 125.52678 * 2 1 4 4 C 1.41210 * 108.24504 * 180.02562 * 3 2 1 5 5 N 1.32937 * 126.38075 * 179.97438 * 4 3 2 6 6 C 1.33818 * 119.99804 * 0.03409 * 5 4 3 7 7 O 1.21848 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00127 * 180.02562 * 6 5 4 9 9 C 1.39897 * 120.00481 * 184.67477 * 8 6 5 10 10 C 1.38919 * 120.48230 * 145.02431 * 9 8 6 11 11 N 1.31772 * 120.71597 * 179.97438 * 10 9 8 12 12 C 1.31874 * 121.82600 * 0.02562 * 11 10 9 13 13 C 1.38482 * 120.88048 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.40185 * 179.97438 * 13 12 11 15 15 C 1.38738 * 119.18901 * 359.97426 * 13 12 11 16 16 N 1.37425 * 107.24328 * 0.26407 * 4 3 2 17 17 H 0.97001 * 126.36889 * 179.69386 * 16 4 3 18 18 N 1.36456 * 125.52209 * 180.02562 * 2 1 3 19 19 C 1.46500 * 125.85575 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47123 * 84.99310 * 19 18 2 21 21 H 1.08001 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00372 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46751 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47361 * 119.99517 * 24 22 20 27 27 H 1.48496 * 109.47320 * 240.00210 * 24 22 20 28 28 H 1.09002 * 109.46802 * 89.97667 * 1 2 3 29 29 H 1.08991 * 109.47056 * 209.97579 * 1 2 3 30 30 H 1.08993 * 109.46717 * 329.98205 * 1 2 3 31 31 H 1.08000 * 125.87874 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00119 * 4.66647 * 8 6 5 33 33 H 1.08000 * 119.63829 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.56095 * 179.97438 * 12 11 10 35 35 H 1.08003 * 120.82723 * 180.02562 * 15 13 12 36 36 H 1.08997 * 109.47362 * 204.99584 * 19 18 2 37 37 H 1.09001 * 109.47166 * 324.99882 * 19 18 2 38 38 H 0.96999 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6396 0.6788 -0.0006 5 7 4.7104 1.4665 -0.0013 6 6 4.5627 2.7965 -0.0007 7 8 3.4466 3.2855 -0.0001 8 7 5.6483 3.5951 -0.0019 9 6 5.4964 4.9823 0.0974 10 6 6.4279 5.7454 0.7901 11 7 6.2896 7.0523 0.8861 12 6 5.2727 7.6863 0.3358 13 6 4.3022 6.9952 -0.3701 14 9 3.2641 7.6545 -0.9296 15 6 4.4090 5.6177 -0.4958 16 7 3.6387 -0.6955 -0.0070 17 1 4.4193 -1.2712 -0.0131 18 7 2.2999 -1.1106 -0.0005 19 6 1.8321 -2.4989 -0.0016 20 6 1.5547 -2.9343 -1.4175 21 1 1.7116 -2.2460 -2.2348 22 6 1.1006 -4.2116 -1.6695 23 7 0.9100 -5.0500 -0.6744 24 14 0.7574 -4.7516 -3.4245 25 1 1.0498 -3.6305 -4.3534 26 1 1.6191 -5.9128 -3.7626 27 1 -0.6700 -5.1404 -3.5526 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3632 0.8898 0.5141 31 1 1.9469 2.1219 0.0004 32 1 6.5350 3.2081 -0.0715 33 1 7.2745 5.2622 1.2550 34 1 5.1952 8.7587 0.4376 35 1 3.6674 5.0525 -1.0408 36 1 2.5985 -3.1410 0.4324 37 1 0.9181 -2.5748 0.5874 38 1 0.5901 -5.9485 -0.8516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439629063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = 46.976763 kcal Electronic energy + Delta-G solvation = -25251.658729 eV Core-core repulsion = 21238.923604 eV Total energy + Delta-G solvation = -4012.735125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00584 -42.47978 -41.60369 -40.07061 -36.54686 -35.72630 -34.84145 -33.75406 -32.91193 -32.30427 -30.81331 -28.85356 -28.42300 -25.58747 -24.86022 -24.33759 -23.00793 -21.45915 -21.04722 -19.56872 -18.93543 -18.62581 -18.24733 -17.96632 -17.46819 -17.06314 -16.81881 -16.62586 -16.54583 -15.98974 -15.71748 -15.55328 -14.92907 -14.51786 -14.43602 -14.33404 -14.28784 -14.12047 -13.82363 -13.66001 -13.30448 -13.21058 -13.01491 -12.75058 -12.33683 -12.13016 -11.87510 -11.46456 -11.15582 -10.83276 -10.78462 -10.43058 -10.36133 -9.96460 -9.40665 -8.59080 -8.27056 -6.56385 -0.18363 0.00807 0.25283 0.51365 1.36319 1.42179 1.50518 1.54057 1.96505 2.30144 2.56379 2.84089 2.94121 2.96552 3.11095 3.51534 3.65156 3.72679 3.83254 3.96427 4.17987 4.26781 4.47720 4.50326 4.67748 4.82974 4.84305 4.84702 4.92515 5.01065 5.09838 5.20852 5.37069 5.50906 5.69404 5.73495 5.86550 6.07999 6.27435 6.54651 6.70306 6.75174 6.80386 7.17327 7.90233 8.65995 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.002435 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.211793 B =11498.014076 C =11819.698238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.198 3.802 3 C -0.346 4.346 4 C 0.475 3.525 5 N -0.713 5.713 6 C 0.673 3.327 7 O -0.638 6.638 8 N -0.650 5.650 9 C 0.147 3.853 10 C 0.070 3.930 11 N -0.446 5.446 12 C 0.051 3.949 13 C 0.061 3.939 14 F -0.134 7.134 15 C -0.137 4.137 16 N -0.462 5.462 17 H 0.454 0.546 18 N -0.347 5.347 19 C 0.267 3.733 20 C -0.560 4.560 21 H 0.057 0.943 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.962 3.038 25 H -0.273 1.273 26 H -0.279 1.279 27 H -0.273 1.273 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.176 0.824 32 H 0.427 0.573 33 H 0.195 0.805 34 H 0.195 0.805 35 H 0.140 0.860 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 14.108 2.370 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.378 4.378 4 C 0.223 3.777 5 N -0.478 5.478 6 C 0.373 3.627 7 O -0.521 6.521 8 N -0.296 5.296 9 C 0.047 3.953 10 C -0.091 4.091 11 N -0.154 5.154 12 C -0.107 4.107 13 C 0.039 3.961 14 F -0.113 7.113 15 C -0.166 4.166 16 N -0.184 5.184 17 H 0.303 0.697 18 N -0.133 5.133 19 C 0.150 3.850 20 C -0.598 4.598 21 H 0.076 0.924 22 C -0.170 4.170 23 N -0.550 5.550 24 Si 0.787 3.213 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.198 1.198 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.193 0.807 32 H 0.266 0.734 33 H 0.211 0.789 34 H 0.212 0.788 35 H 0.158 0.842 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.976 13.997 2.878 15.489 hybrid contribution -0.835 -1.387 -1.566 2.253 sum 5.140 12.610 1.312 13.680 Atomic orbital electron populations 1.20785 0.83737 1.05417 1.05184 1.21847 0.96014 0.84542 0.90407 1.22112 0.91237 1.00323 1.24115 1.18801 0.91363 0.82495 0.85032 1.68020 1.28751 1.03299 1.47753 1.16894 0.83028 0.85466 0.77329 1.90738 1.25186 1.78466 1.57731 1.42036 1.10078 1.02397 1.75133 1.18625 0.96463 0.83884 0.96300 1.23085 1.00270 0.89238 0.96490 1.67776 1.20713 1.09544 1.17351 1.23176 0.89428 1.02348 0.95793 1.18761 0.87998 0.90193 0.99168 1.91505 1.56034 1.80466 1.83248 1.21839 1.00696 0.93195 1.00907 1.44389 0.99050 1.04658 1.70328 0.69697 1.47845 0.93101 1.08004 1.64358 1.19742 0.96307 0.70822 0.98169 1.21543 1.47189 0.98608 0.92494 0.92434 1.25558 0.94231 0.95962 1.01252 1.69961 1.44914 1.07283 1.32809 0.85436 0.78260 0.78127 0.79470 1.19787 1.20500 1.19831 0.88369 0.89709 0.86877 0.80744 0.73420 0.78850 0.78784 0.84235 0.93821 0.91185 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 10.09 71.24 0.72 -1.65 16 2 C 0.20 6.61 6.92 41.09 0.28 6.90 16 3 C -0.35 -12.63 9.41 22.24 0.21 -12.42 16 4 C 0.47 17.66 8.07 133.95 1.08 18.74 16 5 N -0.71 -26.18 10.59 -322.56 -3.42 -29.59 16 6 C 0.67 24.43 8.33 179.35 1.49 25.92 16 7 O -0.64 -25.93 10.73 -4.82 -0.05 -25.98 16 8 N -0.65 -17.95 5.35 -317.37 -1.70 -19.64 16 9 C 0.15 3.84 6.32 38.25 0.24 4.08 16 10 C 0.07 1.46 11.12 84.86 0.94 2.40 16 11 N -0.45 -9.71 10.35 -195.12 -2.02 -11.73 16 12 C 0.05 1.06 11.17 84.74 0.95 2.00 16 13 C 0.06 1.52 7.34 22.45 0.16 1.69 16 14 F -0.13 -3.42 17.28 44.97 0.78 -2.64 16 15 C -0.14 -3.99 8.79 22.62 0.20 -3.79 16 16 N -0.46 -15.81 7.38 -54.78 -0.40 -16.21 16 17 H 0.45 13.49 8.96 -213.28 -1.91 11.57 16 18 N -0.35 -12.48 3.63 -337.54 -1.23 -13.71 16 19 C 0.27 10.70 5.93 85.63 0.51 11.21 16 20 C -0.56 -25.53 9.39 25.60 0.24 -25.29 16 21 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 22 C 0.03 1.52 5.46 84.66 0.46 1.98 16 23 N -0.91 -44.65 13.29 21.45 0.28 -44.36 16 24 Si 0.96 37.98 29.54 68.60 2.03 40.01 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.08 2.12 7.14 -2.39 -0.02 2.10 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.18 6.74 5.77 -2.91 -0.02 6.72 16 32 H 0.43 9.24 8.92 -92.71 -0.83 8.41 16 33 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.14 4.78 6.31 -2.91 -0.02 4.76 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.81 7.18 -2.39 -0.02 2.80 16 38 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 Total: -1.00 -59.63 338.76 0.18 -59.45 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -1.59 Total: 32.63 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.49 Total: 31.78 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -8.48 Total: -135.25 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -59.63 0.18 -59.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439629063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.427 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds