Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34966 * 125.53047 * 2 1 4 4 C 1.41195 * 108.24431 * 179.97438 * 3 2 1 5 5 N 1.32948 * 126.37820 * 179.97438 * 4 3 2 6 6 C 1.33803 * 119.99688 * 0.02562 * 5 4 3 7 7 O 1.21840 * 119.99804 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99775 * 179.97438 * 6 5 4 9 9 C 1.39424 * 119.99880 * 175.16915 * 8 6 5 10 10 C 1.39037 * 119.67180 * 185.13266 * 9 8 6 11 11 C 1.38348 * 119.12764 * 179.78947 * 10 9 8 12 12 C 1.39026 * 118.47325 * 0.48238 * 11 10 9 13 13 F 1.35102 * 120.36356 * 179.76807 * 12 11 10 14 14 C 1.38262 * 119.26780 * 359.73844 * 12 11 10 15 15 N 1.31964 * 120.81774 * 0.03135 * 14 12 11 16 16 N 1.37428 * 107.24723 * 0.22878 * 4 3 2 17 17 H 0.97001 * 126.36838 * 179.77566 * 16 4 3 18 18 N 1.36462 * 125.52351 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.84985 * 0.04858 * 18 2 1 20 20 C 1.50704 * 109.46813 * 85.00625 * 19 18 2 21 21 H 1.08000 * 120.00118 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99845 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47305 * 89.99881 * 24 22 20 26 26 H 1.48502 * 109.47043 * 210.00158 * 24 22 20 27 27 H 1.48502 * 109.47040 * 329.99641 * 24 22 20 28 28 H 1.09000 * 109.47466 * 90.02142 * 1 2 3 29 29 H 1.08998 * 109.47362 * 210.02207 * 1 2 3 30 30 H 1.09002 * 109.47206 * 330.02402 * 1 2 3 31 31 H 1.08000 * 125.87198 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99892 * 354.89111 * 8 6 5 33 33 H 1.07996 * 120.43867 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.76200 * 180.21792 * 11 10 9 35 35 H 1.08004 * 119.59133 * 179.97438 * 14 12 11 36 36 H 1.09003 * 109.46860 * 205.00314 * 19 18 2 37 37 H 1.08995 * 109.48008 * 325.00347 * 19 18 2 38 38 H 0.97001 * 119.99981 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2913 1.0984 0.0000 4 6 3.6395 0.6788 0.0006 5 7 4.7104 1.4665 0.0003 6 6 4.5627 2.7964 -0.0001 7 8 3.4467 3.2853 0.0002 8 7 5.6484 3.5950 0.0001 9 6 5.4971 4.9772 -0.1020 10 6 6.6224 5.7868 -0.2090 11 6 6.4590 7.1565 -0.3142 12 6 5.1685 7.6733 -0.2984 13 9 4.9650 9.0055 -0.3939 14 6 4.0955 6.8087 -0.1845 15 7 4.2840 5.5060 -0.0906 16 7 3.6385 -0.6955 -0.0043 17 1 4.4192 -1.2712 -0.0082 18 7 2.2998 -1.1106 0.0005 19 6 1.8319 -2.4988 0.0001 20 6 1.5553 -2.9352 -1.4156 21 1 1.7127 -2.2474 -2.2332 22 6 1.1022 -4.2130 -1.6670 23 7 0.9120 -5.0510 -0.6715 24 14 0.7600 -4.7542 -3.4219 25 1 1.9911 -5.3426 -4.0075 26 1 -0.3236 -5.7697 -3.4243 27 1 0.3400 -3.5804 -4.2289 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 1.9469 2.1220 -0.0004 32 1 6.5348 3.2084 0.0754 33 1 7.6109 5.3518 -0.2139 34 1 7.3146 7.8097 -0.4021 35 1 3.0907 7.2045 -0.1713 36 1 2.5982 -3.1406 0.4350 37 1 0.9178 -2.5744 0.5888 38 1 0.5936 -5.9500 -0.8484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446262608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = 78.520582 kcal Electronic energy + Delta-G solvation = -25124.271935 eV Core-core repulsion = 21112.904652 eV Total energy + Delta-G solvation = -4011.367283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.90932 -40.96810 -40.44541 -38.53830 -34.92312 -34.05382 -33.16762 -32.53257 -32.21807 -30.81130 -29.38034 -27.53849 -26.73349 -24.39354 -23.66861 -22.91876 -21.60761 -20.02832 -19.60779 -18.26185 -17.62840 -17.24352 -16.99803 -16.71270 -15.94406 -15.82475 -15.15274 -15.06768 -14.82739 -14.57309 -14.31947 -14.08422 -13.80988 -13.49318 -13.27499 -12.97601 -12.81959 -12.67770 -12.52306 -12.47903 -12.05119 -11.82460 -11.37619 -11.07471 -10.58917 -10.53395 -10.24974 -10.03044 -9.99777 -9.47650 -9.27727 -8.93851 -8.88335 -8.30324 -8.07409 -6.94915 -6.50971 -4.67029 0.90700 1.08696 1.74171 1.99001 3.04102 3.05535 3.09626 3.12465 3.16801 3.67097 4.04000 4.06250 4.28277 4.45599 4.62642 4.64282 4.77870 4.79765 5.01703 5.09233 5.41682 5.53047 5.60093 5.75212 5.78748 5.86171 5.96616 6.12476 6.29455 6.36335 6.49278 6.59761 6.70897 6.96830 7.14934 7.37135 7.49624 7.57242 7.67281 7.90811 8.24148 8.31091 8.42979 9.03486 9.48526 10.51012 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.002300 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.439826 B =12171.699820 C =12326.249584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.488 3.512 5 N -0.713 5.713 6 C 0.672 3.328 7 O -0.567 6.567 8 N -0.646 5.646 9 C 0.383 3.617 10 C -0.194 4.194 11 C -0.077 4.077 12 C -0.010 4.010 13 F -0.139 7.139 14 C 0.115 3.885 15 N -0.447 5.447 16 N -0.468 5.468 17 H 0.445 0.555 18 N -0.342 5.342 19 C 0.254 3.746 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.887 5.887 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.416 0.584 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 14.839 2.360 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 C -0.365 4.365 4 C 0.236 3.764 5 N -0.479 5.479 6 C 0.370 3.630 7 O -0.442 6.442 8 N -0.292 5.292 9 C 0.149 3.851 10 C -0.219 4.219 11 C -0.104 4.104 12 C -0.033 4.033 13 F -0.118 7.118 14 C -0.046 4.046 15 N -0.161 5.161 16 N -0.191 5.191 17 H 0.292 0.708 18 N -0.128 5.128 19 C 0.138 3.862 20 C -0.594 4.594 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.194 1.194 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.202 0.798 32 H 0.252 0.748 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.000 13.653 2.488 15.120 hybrid contribution 0.974 0.023 -1.026 1.415 sum 6.974 13.676 1.462 15.421 Atomic orbital electron populations 1.20598 0.86349 1.03886 1.04309 1.21317 0.94503 0.85515 0.92214 1.22201 0.91001 1.00394 1.22930 1.18578 0.90949 0.81997 0.84838 1.67929 1.28966 1.03339 1.47705 1.16681 0.82800 0.85088 0.78408 1.90857 1.22915 1.77715 1.52717 1.42521 1.10917 1.02059 1.73653 1.18454 0.89383 0.84823 0.92396 1.21328 0.99053 0.92969 1.08518 1.21303 0.96217 0.95312 0.97557 1.18685 0.95335 0.78570 1.10730 1.91477 1.95765 1.30289 1.94275 1.22883 0.98877 0.87731 0.95078 1.67936 1.22417 1.11514 1.14189 1.44393 0.98977 1.04890 1.70793 0.70793 1.47917 0.92531 1.08178 1.64208 1.20028 0.96459 0.70185 0.99512 1.21379 1.47611 0.98726 0.91642 0.91289 1.24945 0.94266 0.95812 0.98434 1.69895 1.44081 1.06902 1.31439 0.86307 0.78347 0.78735 0.83121 1.20228 1.20664 1.19415 0.89134 0.90113 0.89501 0.79840 0.74759 0.83883 0.83666 0.81679 0.93134 0.91428 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.09 36.00 0.36 -0.94 16 2 C 0.19 3.38 6.92 -81.70 -0.57 2.81 16 3 C -0.33 -6.37 9.41 -39.62 -0.37 -6.74 16 4 C 0.49 9.49 8.07 -155.28 -1.25 8.23 16 5 N -0.71 -13.80 10.59 -15.79 -0.17 -13.97 16 6 C 0.67 13.09 8.43 -87.78 -0.74 12.35 16 7 O -0.57 -12.36 11.52 5.06 0.06 -12.30 16 8 N -0.65 -9.88 5.40 -15.99 -0.09 -9.97 16 9 C 0.38 5.55 7.42 -154.70 -1.15 4.40 16 10 C -0.19 -2.01 9.94 -39.24 -0.39 -2.40 16 11 C -0.08 -0.75 10.15 -39.25 -0.40 -1.14 16 12 C -0.01 -0.11 7.34 -39.28 -0.29 -0.40 16 13 F -0.14 -1.57 17.28 2.25 0.04 -1.53 16 14 C 0.12 1.50 11.16 -17.49 -0.20 1.30 16 15 N -0.45 -7.30 7.88 -12.31 -0.10 -7.40 16 16 N -0.47 -8.37 7.38 31.33 0.23 -8.14 16 17 H 0.44 6.91 8.96 -182.55 -1.64 5.27 16 18 N -0.34 -6.43 3.63 -58.04 -0.21 -6.64 16 19 C 0.25 5.28 5.93 -5.19 -0.03 5.25 16 20 C -0.56 -13.04 9.39 -34.44 -0.32 -13.36 16 21 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -22.22 13.29 55.43 0.74 -21.48 16 24 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.11 7.14 -51.93 -0.37 0.74 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.18 3.72 5.77 -52.49 -0.30 3.41 16 32 H 0.42 4.98 8.80 -40.82 -0.36 4.63 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 38 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -30.42 340.11 -9.96 -40.38 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.12 Total: 10.91 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: -5.44 Total: 10.96 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: 0.41 Total: -67.59 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.06 Total: -12.30 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.42 -9.96 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446262608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.899 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds