Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34966 * 125.53047 * 2 1 4 4 C 1.41195 * 108.24431 * 179.97438 * 3 2 1 5 5 N 1.32948 * 126.37820 * 179.97438 * 4 3 2 6 6 C 1.33803 * 119.99688 * 0.02562 * 5 4 3 7 7 O 1.21840 * 119.99804 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99775 * 179.97438 * 6 5 4 9 9 C 1.39424 * 119.99880 * 175.16915 * 8 6 5 10 10 C 1.39037 * 119.67180 * 185.13266 * 9 8 6 11 11 C 1.38348 * 119.12764 * 179.78947 * 10 9 8 12 12 C 1.39026 * 118.47325 * 0.48238 * 11 10 9 13 13 F 1.35102 * 120.36356 * 179.76807 * 12 11 10 14 14 C 1.38262 * 119.26780 * 359.73844 * 12 11 10 15 15 N 1.31964 * 120.81774 * 0.03135 * 14 12 11 16 16 N 1.37428 * 107.24723 * 0.22878 * 4 3 2 17 17 H 0.97001 * 126.36838 * 179.77566 * 16 4 3 18 18 N 1.36462 * 125.52351 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.84985 * 0.04858 * 18 2 1 20 20 C 1.50704 * 109.46813 * 85.00625 * 19 18 2 21 21 H 1.08000 * 120.00118 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99845 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47305 * 89.99881 * 24 22 20 26 26 H 1.48502 * 109.47043 * 210.00158 * 24 22 20 27 27 H 1.48502 * 109.47040 * 329.99641 * 24 22 20 28 28 H 1.09000 * 109.47466 * 90.02142 * 1 2 3 29 29 H 1.08998 * 109.47362 * 210.02207 * 1 2 3 30 30 H 1.09002 * 109.47206 * 330.02402 * 1 2 3 31 31 H 1.08000 * 125.87198 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99892 * 354.89111 * 8 6 5 33 33 H 1.07996 * 120.43867 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.76200 * 180.21792 * 11 10 9 35 35 H 1.08004 * 119.59133 * 179.97438 * 14 12 11 36 36 H 1.09003 * 109.46860 * 205.00314 * 19 18 2 37 37 H 1.08995 * 109.48008 * 325.00347 * 19 18 2 38 38 H 0.97001 * 119.99981 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2913 1.0984 0.0000 4 6 3.6395 0.6788 0.0006 5 7 4.7104 1.4665 0.0003 6 6 4.5627 2.7964 -0.0001 7 8 3.4467 3.2853 0.0002 8 7 5.6484 3.5950 0.0001 9 6 5.4971 4.9772 -0.1020 10 6 6.6224 5.7868 -0.2090 11 6 6.4590 7.1565 -0.3142 12 6 5.1685 7.6733 -0.2984 13 9 4.9650 9.0055 -0.3939 14 6 4.0955 6.8087 -0.1845 15 7 4.2840 5.5060 -0.0906 16 7 3.6385 -0.6955 -0.0043 17 1 4.4192 -1.2712 -0.0082 18 7 2.2998 -1.1106 0.0005 19 6 1.8319 -2.4988 0.0001 20 6 1.5553 -2.9352 -1.4156 21 1 1.7127 -2.2474 -2.2332 22 6 1.1022 -4.2130 -1.6670 23 7 0.9120 -5.0510 -0.6715 24 14 0.7600 -4.7542 -3.4219 25 1 1.9911 -5.3426 -4.0075 26 1 -0.3236 -5.7697 -3.4243 27 1 0.3400 -3.5804 -4.2289 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 1.9469 2.1220 -0.0004 32 1 6.5348 3.2084 0.0754 33 1 7.6109 5.3518 -0.2139 34 1 7.3146 7.8097 -0.4021 35 1 3.0907 7.2045 -0.1713 36 1 2.5982 -3.1406 0.4350 37 1 0.9178 -2.5744 0.5888 38 1 0.5936 -5.9500 -0.8484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446262608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = 59.555337 kcal Electronic energy + Delta-G solvation = -25125.094329 eV Core-core repulsion = 21112.904652 eV Total energy + Delta-G solvation = -4012.189677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.82141 -42.41636 -41.53911 -39.83972 -36.30194 -35.54067 -34.76885 -33.69878 -33.39736 -32.37467 -30.47749 -28.82184 -28.38187 -25.55529 -24.91650 -24.27288 -22.91677 -21.38557 -20.99263 -19.46943 -18.88900 -18.55911 -18.32816 -18.04347 -17.19108 -16.81981 -16.67658 -16.52278 -16.21347 -15.91736 -15.58568 -15.30920 -14.74305 -14.55549 -14.41126 -14.29430 -14.23588 -14.18439 -13.77578 -13.63903 -13.43747 -13.18479 -12.98935 -12.73012 -12.30309 -12.08258 -11.55995 -11.37025 -11.09105 -10.90749 -10.77098 -10.42661 -10.31599 -9.74810 -9.15882 -8.54821 -8.22787 -6.54888 -0.09837 0.20300 0.34882 0.53964 1.38005 1.42594 1.50918 1.61301 1.95391 2.31238 2.64756 2.86857 2.96625 3.16678 3.21216 3.48313 3.69014 3.84145 3.93827 4.10090 4.23365 4.30514 4.52223 4.67398 4.70025 4.83967 4.86306 4.90728 4.94371 4.95758 5.12390 5.27548 5.45023 5.52453 5.71191 5.80827 5.88614 6.12515 6.26546 6.51006 6.65082 6.88190 7.15032 7.18717 8.06201 8.67289 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.002300 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.439826 B =12171.699820 C =12326.249584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.198 3.802 3 C -0.346 4.346 4 C 0.475 3.525 5 N -0.716 5.716 6 C 0.661 3.339 7 O -0.599 6.599 8 N -0.640 5.640 9 C 0.350 3.650 10 C -0.171 4.171 11 C -0.067 4.067 12 C -0.003 4.003 13 F -0.137 7.137 14 C 0.095 3.905 15 N -0.495 5.495 16 N -0.463 5.463 17 H 0.453 0.547 18 N -0.348 5.348 19 C 0.268 3.732 20 C -0.561 4.561 21 H 0.057 0.943 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.962 3.038 25 H -0.277 1.277 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.173 0.827 32 H 0.430 0.570 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.023 15.880 1.901 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.379 4.379 4 C 0.222 3.778 5 N -0.482 5.482 6 C 0.359 3.641 7 O -0.476 6.476 8 N -0.287 5.287 9 C 0.118 3.882 10 C -0.195 4.195 11 C -0.094 4.094 12 C -0.026 4.026 13 F -0.116 7.116 14 C -0.064 4.064 15 N -0.209 5.209 16 N -0.187 5.187 17 H 0.302 0.698 18 N -0.135 5.135 19 C 0.151 3.849 20 C -0.599 4.599 21 H 0.075 0.925 22 C -0.170 4.170 23 N -0.550 5.550 24 Si 0.787 3.213 25 H -0.203 1.203 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.190 0.810 32 H 0.269 0.731 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.190 0.810 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.253 14.738 2.031 16.551 hybrid contribution 0.654 -0.148 -0.871 1.100 sum 7.907 14.590 1.159 16.636 Atomic orbital electron populations 1.20768 0.83776 1.05364 1.05106 1.21825 0.95973 0.84543 0.90513 1.22091 0.91351 1.00239 1.24172 1.18790 0.91367 0.82496 0.85100 1.68008 1.28877 1.03515 1.47817 1.17009 0.83495 0.85306 0.78251 1.90830 1.24402 1.78199 1.54180 1.42296 1.10434 1.02402 1.73544 1.18825 0.90366 0.84611 0.94438 1.21672 0.99328 0.92758 1.05702 1.21746 0.96544 0.95441 0.95622 1.18765 0.95837 0.78376 1.09660 1.91488 1.95849 1.30106 1.94157 1.22999 1.00092 0.87204 0.96119 1.67752 1.24353 1.13162 1.15639 1.44346 0.98994 1.04560 1.70776 0.69781 1.47797 0.93094 1.07911 1.64719 1.19717 0.96248 0.70855 0.98118 1.21524 1.47250 0.98608 0.92517 0.92485 1.25563 0.94221 0.95952 1.01287 1.69957 1.44954 1.07223 1.32833 0.85486 0.78088 0.78225 0.79537 1.20297 1.20196 1.19486 0.88467 0.89684 0.86952 0.81014 0.73127 0.80009 0.79672 0.80995 0.93882 0.91255 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.49 10.09 71.23 0.72 -1.77 16 2 C 0.20 6.95 6.92 41.08 0.28 7.23 16 3 C -0.35 -13.48 9.41 22.24 0.21 -13.27 16 4 C 0.47 18.70 8.07 133.94 1.08 19.79 16 5 N -0.72 -28.05 10.59 -322.58 -3.42 -31.46 16 6 C 0.66 26.22 8.43 179.36 1.51 27.74 16 7 O -0.60 -26.99 11.52 -4.80 -0.06 -27.04 16 8 N -0.64 -19.34 5.40 -322.67 -1.74 -21.09 16 9 C 0.35 9.88 7.42 132.92 0.99 10.86 16 10 C -0.17 -3.02 9.94 22.49 0.22 -2.80 16 11 C -0.07 -1.06 10.15 22.48 0.23 -0.83 16 12 C 0.00 -0.06 7.34 22.46 0.16 0.10 16 13 F -0.14 -2.82 17.28 44.97 0.78 -2.04 16 14 C 0.10 2.48 11.16 84.68 0.95 3.42 16 15 N -0.49 -16.38 7.88 -192.87 -1.52 -17.90 16 16 N -0.46 -16.64 7.38 -54.78 -0.40 -17.05 16 17 H 0.45 14.13 8.96 -213.28 -1.91 12.21 16 18 N -0.35 -13.08 3.63 -337.54 -1.23 -14.30 16 19 C 0.27 11.06 5.93 85.64 0.51 11.57 16 20 C -0.56 -26.13 9.39 25.60 0.24 -25.89 16 21 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 22 C 0.03 1.53 5.46 84.66 0.46 1.99 16 23 N -0.91 -45.31 13.29 21.45 0.28 -45.02 16 24 Si 0.96 38.56 29.54 68.60 2.03 40.59 16 25 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.24 7.14 -2.39 -0.02 2.22 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.17 7.20 5.77 -2.91 -0.02 7.18 16 32 H 0.43 9.86 8.80 -92.71 -0.82 9.04 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 2.87 7.18 -2.39 -0.02 2.85 16 38 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -66.28 340.11 0.71 -65.57 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -1.58 Total: 31.61 kcal Atomic # 6 Polarization: 30.58 SS G_CDS: 7.56 Total: 38.14 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -8.02 Total: -146.83 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.04 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -66.28 0.71 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446262608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.125 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds