Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34828 * 125.49618 * 2 1 4 4 C 1.41402 * 108.25099 * 180.26166 * 3 2 1 5 5 N 1.32601 * 126.40372 * 179.76211 * 4 3 2 6 6 C 1.34649 * 119.99455 * 0.02562 * 5 4 3 7 7 O 1.22186 * 120.00835 * 0.02562 * 6 5 4 8 8 N 1.33803 * 119.99695 * 180.02562 * 6 5 4 9 9 C 1.34162 * 120.00132 * 236.34390 * 8 6 5 10 10 C 1.41370 * 120.67609 * 187.62405 * 9 8 6 11 11 C 1.35212 * 119.28688 * 179.97438 * 10 9 8 12 12 N 1.35529 * 120.74122 * 359.97438 * 11 10 9 13 13 H 0.96998 * 119.27119 * 180.02562 * 12 11 10 14 14 C 1.35737 * 121.45760 * 0.02562 * 12 11 10 15 15 C 1.35333 * 120.65254 * 359.72413 * 14 12 11 16 16 F 1.35098 * 120.39939 * 180.26450 * 15 14 12 17 17 N 1.37629 * 107.19675 * 359.60456 * 4 3 2 18 18 H 0.97003 * 126.38402 * 180.11806 * 17 4 3 19 19 N 1.36582 * 125.50086 * 180.02562 * 2 1 3 20 20 C 1.46492 * 125.84119 * 359.97438 * 19 2 1 21 21 C 1.50706 * 109.47052 * 84.99647 * 20 19 2 22 22 H 1.07996 * 120.00128 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99985 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99836 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00130 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47368 * 60.00046 * 25 23 21 27 27 H 1.48499 * 109.47260 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46894 * 300.00229 * 25 23 21 29 29 H 1.09003 * 109.46968 * 89.97660 * 1 2 3 30 30 H 1.08997 * 109.47012 * 209.97804 * 1 2 3 31 31 H 1.09000 * 109.46958 * 329.97567 * 1 2 3 32 32 H 1.07997 * 125.87457 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.35707 * 359.97438 * 10 9 8 34 34 H 1.08009 * 119.63044 * 180.02562 * 11 10 9 35 35 H 1.08002 * 119.67619 * 180.02562 * 14 12 11 36 36 H 1.08994 * 109.47419 * 204.99726 * 20 19 2 37 37 H 1.09003 * 109.47149 * 325.00031 * 20 19 2 38 38 H 0.97001 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0977 0.0000 4 6 3.6403 0.6785 -0.0061 5 7 4.7083 1.4645 -0.0125 6 6 4.5592 2.8027 -0.0129 7 8 3.4400 3.2929 -0.0071 8 7 5.6368 3.5958 -0.0198 9 6 5.8008 4.5131 0.9454 10 6 6.8445 5.4634 0.8675 11 6 6.9837 6.3755 1.8559 12 7 6.1360 6.3861 2.9132 13 1 6.2552 7.0502 3.6101 14 6 5.1237 5.4879 3.0186 15 6 4.9284 4.5529 2.0599 16 9 3.9160 3.6648 2.1674 17 7 3.6392 -0.6978 -0.0007 18 1 4.4196 -1.2738 -0.0013 19 7 2.3002 -1.1119 -0.0005 20 6 1.8315 -2.4999 -0.0006 21 6 1.5529 -2.9359 -1.4160 22 1 1.7096 -2.2481 -2.2337 23 6 1.0988 -4.2133 -1.6672 24 7 0.9083 -5.0511 -0.6714 25 14 0.7541 -4.7540 -3.4216 26 1 1.9989 -4.6514 -4.2248 27 1 0.2789 -6.1609 -3.4217 28 1 -0.2901 -3.8793 -4.0130 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 1.9449 2.1211 -0.0004 33 1 7.5234 5.4609 0.0275 34 1 7.7790 7.1044 1.8018 35 1 4.4647 5.5228 3.8736 36 1 2.5978 -3.1422 0.4332 37 1 0.9179 -2.5749 0.5892 38 1 0.5885 -5.9497 -0.8480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446339541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = 96.450196 kcal Electronic energy + Delta-G solvation = -25806.798087 eV Core-core repulsion = 21796.208291 eV Total energy + Delta-G solvation = -4010.589796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.57939 -40.67236 -40.49231 -38.41674 -35.03163 -34.01982 -32.97479 -32.04255 -31.56877 -30.73978 -30.06271 -27.36530 -26.60902 -24.37165 -23.55379 -22.88843 -21.33182 -19.63590 -19.44474 -19.10738 -17.58448 -17.02899 -16.80183 -16.51075 -15.93792 -15.77376 -15.31008 -14.88788 -14.69152 -14.57092 -14.10242 -13.93010 -13.81103 -13.44557 -12.92789 -12.74788 -12.64517 -12.52706 -12.35852 -12.13663 -11.89254 -11.71550 -11.30182 -11.20483 -10.96674 -10.47446 -10.26497 -10.02764 -9.61926 -9.30229 -8.84036 -8.75297 -8.66760 -8.12809 -7.36690 -6.71884 -6.37589 -4.56374 0.85814 1.10055 1.89854 2.26499 2.60484 3.08926 3.13362 3.18106 3.22533 3.49219 4.12332 4.17634 4.21448 4.29724 4.48549 4.64433 4.89263 4.90976 5.08393 5.17987 5.46602 5.67524 5.75144 5.93370 5.96177 6.00088 6.18334 6.23968 6.41363 6.52524 6.64062 6.69004 6.73957 6.94543 6.98540 7.47773 7.60624 7.63004 7.86452 8.03988 8.31385 8.53617 8.70787 9.13428 9.75170 10.60956 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.002627 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.033995 B =10656.109313 C =10942.895401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.186 3.814 3 C -0.332 4.332 4 C 0.479 3.521 5 N -0.685 5.685 6 C 0.643 3.357 7 O -0.610 6.610 8 N -0.555 5.555 9 C 0.265 3.735 10 C -0.184 4.184 11 C 0.116 3.884 12 N -0.587 5.587 13 H 0.423 0.577 14 C 0.076 3.924 15 C -0.012 4.012 16 F -0.105 7.105 17 N -0.474 5.474 18 H 0.443 0.557 19 N -0.347 5.347 20 C 0.256 3.744 21 C -0.553 4.553 22 H 0.068 0.932 23 C 0.070 3.930 24 N -0.888 5.888 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.181 0.819 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 20.409 10.800 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 C -0.364 4.364 4 C 0.226 3.774 5 N -0.448 5.448 6 C 0.343 3.657 7 O -0.491 6.491 8 N -0.285 5.285 9 C 0.095 3.905 10 C -0.211 4.211 11 C -0.014 4.014 12 N -0.194 5.194 13 H 0.259 0.741 14 C -0.054 4.054 15 C -0.041 4.041 16 F -0.084 7.084 17 N -0.197 5.197 18 H 0.290 0.710 19 N -0.134 5.134 20 C 0.140 3.860 21 C -0.591 4.591 22 H 0.086 0.914 23 C -0.135 4.135 24 N -0.525 5.525 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.112 19.283 9.976 23.177 hybrid contribution -0.912 -0.547 -0.212 1.084 sum 7.200 18.735 9.765 22.320 Atomic orbital electron populations 1.20565 0.86590 1.03653 1.04130 1.21241 0.94310 0.85628 0.92793 1.22228 0.91241 1.00154 1.22815 1.18970 0.91359 0.82193 0.84883 1.68663 1.28023 1.04081 1.44066 1.18169 0.84576 0.86518 0.76388 1.90812 1.26707 1.79164 1.52455 1.68637 1.23812 1.09133 1.26942 1.19134 0.91693 0.90463 0.89244 1.20449 1.01845 0.97060 1.01771 1.21734 0.93653 0.99071 0.86908 1.40610 1.26033 1.30298 1.22471 0.74144 1.21391 0.92625 0.91403 0.99969 1.17903 0.92595 0.95068 0.98563 1.91647 1.56162 1.64995 1.95565 1.44450 0.98725 1.04928 1.71568 0.70971 1.47808 0.92645 1.07926 1.65029 1.19952 0.96297 0.70442 0.99319 1.21376 1.47278 0.98685 0.91795 0.91367 1.24943 0.94365 0.95802 0.98382 1.69895 1.44256 1.06933 1.31452 0.86366 0.79133 0.77729 0.83267 1.19867 1.20847 1.19692 0.89305 0.90226 0.89740 0.80202 0.82533 0.81069 0.81247 0.93267 0.91663 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.09 36.01 0.36 -1.08 16 2 C 0.19 3.73 6.92 -81.69 -0.57 3.16 16 3 C -0.33 -7.36 9.41 -39.59 -0.37 -7.73 16 4 C 0.48 11.14 8.08 -155.30 -1.25 9.89 16 5 N -0.69 -16.94 10.63 -15.72 -0.17 -17.10 16 6 C 0.64 15.86 6.34 -87.90 -0.56 15.30 16 7 O -0.61 -15.63 11.74 4.75 0.06 -15.57 16 8 N -0.55 -12.10 10.56 -14.40 -0.15 -12.25 16 9 C 0.26 4.36 6.56 -84.38 -0.55 3.81 16 10 C -0.18 -1.90 10.00 -39.47 -0.39 -2.30 16 11 C 0.12 0.58 11.17 -17.00 -0.19 0.39 16 12 N -0.59 -2.52 5.25 -12.98 -0.07 -2.58 16 13 H 0.42 -0.10 8.90 -40.82 -0.36 -0.46 16 14 C 0.08 0.63 11.15 -16.86 -0.19 0.44 16 15 C -0.01 -0.18 6.96 -39.34 -0.27 -0.46 16 16 F -0.11 -2.06 13.36 2.25 0.03 -2.03 16 17 N -0.47 -9.98 7.39 31.35 0.23 -9.75 16 18 H 0.44 8.33 8.96 -182.55 -1.64 6.70 16 19 N -0.35 -7.37 3.64 -58.04 -0.21 -7.58 16 20 C 0.26 5.81 5.93 -5.19 -0.03 5.78 16 21 C -0.55 -13.93 9.39 -34.44 -0.32 -14.26 16 22 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 25 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.22 7.14 -51.93 -0.37 0.85 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.18 4.18 5.76 -52.49 -0.30 3.88 16 33 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.17 0.03 8.06 -52.48 -0.42 -0.39 16 35 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.47 7.18 -51.93 -0.37 1.10 16 38 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -39.37 336.83 -9.05 -48.43 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.13 Total: 6.28 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: -4.44 Total: 14.64 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: 0.37 Total: -71.90 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.06 Total: -15.57 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.03 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.37 -9.05 -48.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446339541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.878 kcal (2) G-P(sol) polarization free energy of solvation -39.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds