Wall clock time and date at job start Tue Mar 31 2020 13:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46912 * 305.47505 * 3 2 1 5 5 C 1.37102 * 119.99846 * 273.46435 * 4 3 2 6 6 H 1.07997 * 119.99875 * 195.22705 * 5 4 3 7 7 C 1.38952 * 120.00124 * 15.23450 * 5 4 3 8 8 N 1.31412 * 119.99745 * 359.56917 * 7 5 4 9 9 Si 1.86797 * 119.99995 * 179.56853 * 7 5 4 10 10 H 1.48503 * 109.47035 * 90.00293 * 9 7 5 11 11 H 1.48509 * 109.47044 * 209.99927 * 9 7 5 12 12 H 1.48489 * 109.47335 * 329.99684 * 9 7 5 13 13 C 1.34768 * 120.00223 * 93.47167 * 4 3 2 14 14 O 1.21291 * 120.00406 * 185.09491 * 13 4 3 15 15 C 1.50703 * 119.99858 * 5.09886 * 13 4 3 16 16 C 1.50702 * 112.84660 * 290.95509 * 15 13 4 17 17 C 1.38425 * 120.02705 * 293.85240 * 16 15 13 18 18 F 1.35100 * 120.01226 * 0.02562 * 17 16 15 19 19 C 1.38469 * 119.97244 * 179.79532 * 17 16 15 20 20 C 1.38207 * 120.02727 * 0.47777 * 19 17 16 21 21 C 1.38211 * 120.05189 * 359.75240 * 20 19 17 22 22 C 1.38420 * 120.02271 * 114.13206 * 16 15 13 23 23 F 1.35096 * 120.01434 * 359.97438 * 22 16 15 24 24 C 1.53783 * 113.61513 * 159.65418 * 15 13 4 25 25 C 1.53783 * 87.07825 * 270.88014 * 24 15 13 26 26 C 1.53771 * 113.61653 * 62.15215 * 15 13 4 27 27 H 4.40642 * 5.51479 * 179.97438 * 4 1 2 28 28 H 1.08992 * 109.46926 * 65.47390 * 3 2 1 29 29 H 1.09003 * 109.46766 * 185.47641 * 3 2 1 30 30 H 0.97007 * 119.99969 * 180.02562 * 8 7 5 31 31 H 1.08002 * 119.98976 * 180.23577 * 19 17 16 32 32 H 1.08004 * 119.97555 * 179.72734 * 20 19 17 33 33 H 1.07995 * 119.98804 * 179.97438 * 21 20 19 34 34 H 1.09001 * 113.61452 * 25.43054 * 24 15 13 35 35 H 1.08999 * 113.61496 * 156.33220 * 24 15 13 36 36 H 1.08997 * 113.61302 * 220.01569 * 25 24 15 37 37 H 1.08998 * 113.61326 * 89.11647 * 25 24 15 38 38 H 1.08998 * 113.61742 * 203.66453 * 26 15 13 39 39 H 1.08997 * 113.61868 * 334.56755 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.8007 1.1248 5 6 3.2952 -0.2244 2.3584 6 1 3.8762 -0.7268 3.1177 7 6 2.7104 1.0060 2.6319 8 7 2.0104 1.6212 1.7054 9 14 2.9191 1.7855 4.3166 10 1 4.1327 2.6414 4.3191 11 1 1.7277 2.6152 4.6292 12 1 3.0627 0.7199 5.3407 13 6 3.4265 -2.1044 0.9470 14 8 3.7422 -2.7902 1.8962 15 6 3.3606 -2.7100 -0.4314 16 6 1.9528 -2.8108 -0.9596 17 6 1.0432 -3.6576 -0.3498 18 9 1.4170 -4.3938 0.7195 19 6 -0.2513 -3.7462 -0.8334 20 6 -0.6325 -2.9971 -1.9305 21 6 0.2762 -2.1548 -2.5431 22 6 1.5699 -2.0611 -2.0584 23 9 2.4580 -1.2381 -2.6576 24 6 4.1678 -4.0114 -0.5717 25 6 5.3691 -3.1321 -0.9575 26 6 4.3489 -2.0819 -1.4281 27 1 -1.0499 0.0000 0.0003 28 1 3.0095 -0.4257 -0.9349 29 1 3.0088 1.0238 0.0981 30 1 1.6024 2.4804 1.8962 31 1 -0.9622 -4.4039 -0.3556 32 1 -1.6411 -3.0701 -2.3097 33 1 -0.0227 -1.5702 -3.4005 34 1 4.3019 -4.5456 0.3689 35 1 3.8209 -4.6555 -1.3797 36 1 5.9726 -3.5471 -1.7647 37 1 5.9658 -2.8094 -0.1043 38 1 4.0515 -2.1986 -2.4702 39 1 4.6293 -1.0585 -1.1790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491657241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:03 Heat of formation + Delta-G solvation = 4.056002 kcal Electronic energy + Delta-G solvation = -28838.701748 eV Core-core repulsion = 24771.892726 eV Total energy + Delta-G solvation = -4066.809022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.20718 -49.90624 -41.78807 -39.46168 -38.40829 -37.03426 -33.86628 -33.05132 -32.25466 -31.15956 -28.61532 -27.55942 -26.73261 -26.07848 -23.64786 -23.30363 -22.27800 -19.94038 -19.71948 -19.11998 -18.51624 -18.10462 -17.69809 -17.31864 -16.98170 -16.63313 -16.49913 -16.40065 -15.95917 -15.92962 -15.34435 -15.25743 -15.25481 -14.36219 -14.05764 -13.92027 -13.70181 -13.40617 -13.20780 -13.03526 -12.99536 -12.89888 -12.77307 -12.63658 -12.42389 -12.17376 -11.81764 -11.41864 -11.33670 -11.29109 -10.94890 -10.58949 -10.35875 -9.88313 -9.64432 -9.59114 -8.24405 -5.97870 0.07284 0.08142 1.31356 1.35620 1.47189 1.84707 2.11445 2.33395 2.45788 2.52785 3.00284 3.04068 3.10881 3.41464 3.53316 3.54417 3.62170 3.80206 3.89117 3.95863 4.05139 4.16614 4.31145 4.45431 4.65691 4.72318 4.77619 4.89968 4.94625 4.96180 5.04533 5.09579 5.12673 5.16552 5.19552 5.26993 5.37995 5.42444 5.52638 5.88652 6.01451 6.44262 7.10454 7.25632 7.40360 7.95024 8.63998 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.006850 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.734839 B = 4086.848652 C = 4644.287248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.122 4.122 3 C 0.215 3.785 4 N -0.447 5.447 5 C -0.345 4.345 6 H 0.072 0.928 7 C 0.001 3.999 8 N -0.876 5.876 9 Si 0.988 3.012 10 H -0.264 1.264 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.467 3.533 14 O -0.622 6.622 15 C -0.063 4.063 16 C -0.144 4.144 17 C 0.101 3.899 18 F -0.148 7.148 19 C -0.162 4.162 20 C -0.049 4.049 21 C -0.149 4.149 22 C 0.126 3.874 23 F -0.126 7.126 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.129 4.129 27 H 0.227 0.773 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.271 0.729 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -5.503 -14.239 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.164 5.164 5 C -0.473 4.473 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.515 5.515 9 Si 0.812 3.188 10 H -0.189 1.189 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.257 3.743 14 O -0.508 6.508 15 C -0.066 4.066 16 C -0.146 4.146 17 C 0.081 3.919 18 F -0.127 7.127 19 C -0.181 4.181 20 C -0.067 4.067 21 C -0.167 4.167 22 C 0.107 3.893 23 F -0.104 7.104 24 C -0.146 4.146 25 C -0.167 4.167 26 C -0.166 4.166 27 H 0.244 0.756 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.189 0.811 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.146 0.854 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.328 -5.591 -13.750 15.771 hybrid contribution 0.326 0.604 1.813 1.938 sum -5.002 -4.987 -11.938 13.871 Atomic orbital electron populations 1.24821 0.95945 1.04254 1.03277 1.23122 0.94481 0.97170 0.97630 1.18930 0.85524 0.97859 0.88327 1.43789 1.55767 1.07308 1.09508 1.19658 1.32619 1.03587 0.91392 0.90953 1.25983 0.94760 0.96814 1.02532 1.70099 1.32219 1.16063 1.33093 0.85010 0.78387 0.77801 0.77575 1.18927 1.19613 1.20774 1.19987 0.82816 0.81617 0.89918 1.90459 1.55199 1.61143 1.44028 1.20654 0.91896 1.00815 0.93271 1.19535 0.95927 1.00817 0.98327 1.17764 0.94606 0.93581 0.85906 1.91507 1.92296 1.74933 1.53933 1.21495 0.93256 1.03670 0.99635 1.21256 1.00994 0.92058 0.92380 1.21518 0.90327 1.01750 1.03155 1.17260 0.88662 0.90860 0.92514 1.91370 1.67294 1.69838 1.81920 1.22818 0.95473 0.94367 1.01915 1.22760 0.96047 0.96638 1.01300 1.23555 0.94512 0.98717 0.99829 0.75613 0.88563 0.88290 0.91829 0.82347 0.79562 0.81092 0.92644 0.87390 0.87411 0.92418 0.85378 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.65 18.89 74.32 1.40 -9.24 16 2 C -0.12 -5.55 8.58 31.13 0.27 -5.29 16 3 C 0.22 10.26 4.35 84.57 0.37 10.63 16 4 N -0.45 -24.33 2.59 -645.42 -1.67 -26.00 16 5 C -0.35 -20.41 9.42 84.04 0.79 -19.62 16 6 H 0.07 4.59 7.31 -2.91 -0.02 4.57 16 7 C 0.00 0.05 5.36 84.93 0.46 0.50 16 8 N -0.88 -46.23 8.16 21.66 0.18 -46.05 16 9 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.47 24.63 5.88 87.66 0.52 25.15 16 14 O -0.62 -37.78 15.65 -3.06 -0.05 -37.83 16 15 C -0.06 -2.53 0.20 -53.15 -0.01 -2.54 16 16 C -0.14 -5.16 3.50 -19.78 -0.07 -5.23 16 17 C 0.10 3.60 7.04 22.37 0.16 3.75 16 18 F -0.15 -6.33 16.24 44.97 0.73 -5.60 16 19 C -0.16 -4.13 10.02 22.32 0.22 -3.91 16 20 C -0.05 -0.93 10.04 22.26 0.22 -0.71 16 21 C -0.15 -3.25 9.73 22.32 0.22 -3.04 16 22 C 0.13 3.76 4.61 22.37 0.10 3.86 16 23 F -0.13 -3.72 11.68 44.97 0.53 -3.19 16 24 C -0.11 -3.84 6.71 31.12 0.21 -3.63 16 25 C -0.13 -4.14 7.80 31.12 0.24 -3.90 16 26 C -0.13 -4.31 4.78 31.12 0.15 -4.16 16 27 H 0.23 7.15 7.80 -4.42 -0.03 7.12 16 28 H 0.10 4.02 1.95 -2.39 0.00 4.02 16 29 H 0.10 5.12 6.19 -2.39 -0.01 5.10 16 30 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.05 2.29 7.36 -2.39 -0.02 2.27 16 35 H 0.11 3.13 8.10 -2.39 -0.02 3.11 16 36 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.13 3.54 5.94 -2.39 -0.01 3.52 16 39 H 0.06 2.32 6.58 -2.39 -0.02 2.31 16 Total: -1.00 -74.73 322.09 8.09 -66.65 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.10 Total: 23.28 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.25 Total: -17.36 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.50 Total: -72.05 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.05 Total: -37.83 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 1.26 Total: -8.79 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.73 8.09 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491657241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.701 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds