Wall clock time and date at job start Tue Mar 31 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.49667 * 2 1 4 4 C 1.53044 * 109.49904 * 120.06385 * 2 1 3 5 5 C 1.53038 * 109.53706 * 58.58584 * 4 2 1 6 6 C 1.53191 * 109.31236 * 61.36535 * 5 4 2 7 7 N 1.46924 * 108.77741 * 305.36762 * 6 5 4 8 8 S 1.65607 * 120.63205 * 233.59008 * 7 6 5 9 9 O 1.42095 * 104.27706 * 209.17983 * 8 7 6 10 10 O 1.42103 * 104.27245 * 337.02995 * 8 7 6 11 11 C 1.81395 * 104.45177 * 93.10231 * 8 7 6 12 12 C 1.53006 * 109.46907 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46893 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00024 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99781 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47297 * 60.00334 * 17 15 13 19 19 H 1.48505 * 109.47294 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47316 * 300.00274 * 17 15 13 21 21 C 1.46924 * 118.73977 * 53.60542 * 7 6 5 22 22 H 1.09000 * 109.70175 * 66.25286 * 21 7 6 23 23 C 1.50699 * 109.58801 * 186.60862 * 21 7 6 24 24 O 1.20827 * 120.00417 * 49.52784 * 23 21 7 25 25 O 1.34233 * 120.00270 * 229.53911 * 23 21 7 26 26 H 1.09007 * 109.47215 * 299.93590 * 1 2 3 27 27 H 1.09000 * 109.47236 * 59.93199 * 1 2 3 28 28 H 1.08998 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47149 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46986 * 300.06207 * 3 2 1 31 31 H 1.09000 * 109.47230 * 60.06798 * 3 2 1 32 32 H 1.08993 * 109.45851 * 178.60674 * 4 2 1 33 33 H 1.08996 * 109.46101 * 298.56631 * 4 2 1 34 34 H 1.08995 * 109.49925 * 181.31713 * 5 4 2 35 35 H 1.09003 * 109.49938 * 301.41565 * 5 4 2 36 36 H 1.09002 * 109.59078 * 185.58061 * 6 5 4 37 37 H 1.09005 * 109.70456 * 65.22052 * 6 5 4 38 38 H 1.08996 * 109.47521 * 300.00265 * 11 8 7 39 39 H 1.09006 * 109.46819 * 60.00411 * 11 8 7 40 40 H 1.08996 * 109.47249 * 300.00435 * 12 11 8 41 41 H 1.08999 * 109.46710 * 60.00451 * 12 11 8 42 42 H 0.97006 * 119.99687 * 179.97438 * 16 15 13 43 43 H 0.96695 * 117.00336 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1554 1.2667 6 6 2.0140 -2.9040 0.0316 7 7 1.6515 -2.1385 -1.1689 8 16 0.8199 -2.8562 -2.4082 9 8 1.2373 -2.1477 -3.5670 10 8 1.0951 -4.2423 -2.2583 11 6 -0.9231 -2.5102 -2.0438 12 6 -1.8040 -3.1290 -3.1312 13 6 -3.2520 -2.8410 -2.8288 14 1 -3.5174 -2.2730 -1.9493 15 6 -4.2378 -3.3016 -3.6754 16 7 -3.9145 -3.9927 -4.7467 17 14 -6.0326 -2.9440 -3.3010 18 1 -6.2478 -1.4751 -3.2656 19 1 -6.8876 -3.5446 -4.3563 20 1 -6.3894 -3.5285 -1.9833 21 6 2.0413 -0.7241 -1.2493 22 1 3.1272 -0.6445 -1.2992 23 6 1.4321 -0.1013 -2.4790 24 8 0.2545 -0.2441 -2.7084 25 8 2.1979 0.6119 -3.3197 26 1 -0.3634 0.5129 0.8906 27 1 -0.3634 0.5149 -0.8894 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1306 1.4418 -0.0005 30 1 1.6766 1.9566 -0.8894 31 1 1.6785 1.9560 0.8906 32 1 3.1304 -0.7440 1.2355 33 1 1.6987 -0.1952 2.1390 34 1 1.8480 -2.6622 2.1678 35 1 0.4132 -2.1351 1.2547 36 1 1.5553 -3.8918 -0.0127 37 1 3.0978 -3.0064 0.0863 38 1 -1.1842 -2.9391 -1.0764 39 1 -1.0818 -1.4321 -2.0180 40 1 -1.5427 -2.6996 -4.0984 41 1 -1.6453 -4.2070 -3.1574 42 1 -4.6082 -4.3171 -5.3421 43 1 1.7623 0.9923 -4.0947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564154641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:43 Heat of formation + Delta-G solvation = -161.627910 kcal Electronic energy + Delta-G solvation = -27852.189755 eV Core-core repulsion = 24024.727607 eV Total energy + Delta-G solvation = -3827.462148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07714 -38.76421 -36.73808 -35.82860 -35.47763 -34.34350 -33.75072 -32.26796 -31.04694 -27.67210 -27.40684 -25.63006 -25.38370 -22.84197 -21.65756 -21.31979 -19.20515 -18.45268 -18.14467 -17.59517 -16.66378 -16.46001 -15.90983 -15.48749 -15.28493 -14.91977 -14.56774 -14.47979 -14.37914 -13.80413 -13.56735 -13.32044 -13.18047 -12.64956 -12.45581 -12.32479 -12.08328 -11.88163 -11.81370 -11.61839 -11.58044 -11.47547 -11.30374 -11.25422 -11.03038 -10.97052 -10.91656 -10.71281 -10.48348 -10.33000 -10.22089 -9.94343 -9.63058 -9.29146 -8.79576 -8.41385 -6.04079 -4.08273 0.77765 2.19002 2.74423 3.17165 3.31904 3.36022 3.38374 4.21109 4.36217 4.39714 4.44954 4.60739 4.71058 4.83676 4.95954 5.01282 5.13875 5.17576 5.30994 5.36326 5.38548 5.49109 5.57674 5.61006 5.72995 5.76993 5.81179 5.84413 5.92805 5.96677 5.99573 6.05628 6.17474 6.36068 6.49801 6.60073 6.92775 7.42753 7.50081 7.89094 8.01582 8.28598 8.94507 9.55113 11.07248 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.004909 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.365514 B = 5702.071503 C = 5805.163732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.101 4.101 5 C -0.143 4.143 6 C 0.123 3.877 7 N -0.997 5.997 8 S 2.583 3.417 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.582 4.582 12 C 0.034 3.966 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.178 3.822 22 H 0.104 0.896 23 C 0.486 3.514 24 O -0.497 6.497 25 O -0.505 6.505 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.856 9.965 12.954 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.138 4.138 5 C -0.182 4.182 6 C -0.001 4.001 7 N -0.833 5.833 8 S 2.684 3.316 9 O -0.955 6.955 10 O -0.957 6.957 11 C -0.716 4.716 12 C -0.005 4.005 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.070 3.930 22 H 0.122 0.878 23 C 0.328 3.672 24 O -0.386 6.386 25 O -0.316 6.316 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 15.140 9.161 12.343 21.575 hybrid contribution -1.700 0.630 -0.069 1.814 sum 13.440 9.791 12.274 20.667 Atomic orbital electron populations 1.22275 0.92804 1.03802 1.03086 1.20859 0.97624 0.95170 0.93415 1.21905 1.01347 0.94396 1.02589 1.21506 1.00558 0.95374 0.96368 1.22057 1.02377 0.95885 0.97883 1.21454 1.00990 0.94773 0.82930 1.58009 1.73082 1.16666 1.35579 1.05973 0.78859 0.73455 0.73267 1.93471 1.81485 1.73252 1.47313 1.93517 1.84894 1.31813 1.85524 1.30698 1.17857 1.13273 1.09785 1.18893 0.94674 0.95652 0.91294 1.20951 0.89849 1.34907 1.09415 0.92143 1.25059 0.99435 0.95061 0.94994 1.69958 1.33561 1.36346 1.13306 0.86550 0.84227 0.78611 0.77973 1.20122 1.21140 1.20135 1.20319 1.00617 0.81616 0.90427 0.87839 1.22824 0.85316 0.75862 0.83220 1.90735 1.17346 1.57151 1.73377 1.84346 1.45850 1.64250 1.37188 0.92190 0.90698 0.91133 0.91946 0.92381 0.91557 0.91439 0.90956 0.90365 0.90459 0.88336 0.90962 0.87134 0.83044 0.95025 0.95539 0.92624 0.72476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 6.75 37.15 0.25 -1.68 16 2 C -0.07 -0.68 0.55 -154.39 -0.08 -0.77 16 3 C -0.14 -1.17 8.30 37.16 0.31 -0.86 16 4 C -0.10 -0.79 4.71 -26.69 -0.13 -0.91 16 5 C -0.14 -1.25 5.74 -26.61 -0.15 -1.40 16 6 C 0.12 1.37 6.33 -3.71 -0.02 1.35 16 7 N -1.00 -14.29 2.65 -107.70 -0.29 -14.57 16 8 S 2.58 51.11 4.73 -107.50 -0.51 50.61 16 9 O -0.96 -21.18 13.91 -67.68 -0.94 -22.12 16 10 O -0.97 -21.22 16.62 -57.54 -0.96 -22.18 16 11 C -0.58 -12.36 4.50 37.16 0.17 -12.19 16 12 C 0.03 0.93 4.98 -27.88 -0.14 0.79 16 13 C -0.51 -14.74 9.11 -34.44 -0.31 -15.05 16 14 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.18 2.23 2.53 -68.75 -0.17 2.06 16 22 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 23 C 0.49 7.30 3.45 36.01 0.12 7.42 16 24 O -0.50 -8.98 9.63 -26.70 -0.26 -9.24 16 25 O -0.51 -6.38 13.42 -40.72 -0.55 -6.92 16 26 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.07 1.03 5.81 -51.93 -0.30 0.73 16 28 H 0.07 0.91 4.40 -51.93 -0.23 0.68 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 7.42 -51.93 -0.39 0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.74 6.34 -51.93 -0.33 0.41 16 36 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 2.09 8.09 -51.93 -0.42 1.67 16 39 H 0.15 3.15 4.51 -51.92 -0.23 2.91 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 43 H 0.42 3.92 9.10 45.56 0.41 4.33 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -36.71 337.66 -8.57 -45.28 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.62 Total: 3.58 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.26 Total: -19.68 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.45 Total: -41.24 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -2.70 Total: -60.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 51.11 SS G_CDS: -0.51 Total: 50.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.71 -8.57 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564154641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.347 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds