Wall clock time and date at job start Tue Mar 31 2020 12:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.49667 * 2 1 4 4 C 1.53044 * 109.49904 * 120.06385 * 2 1 3 5 5 C 1.53038 * 109.53706 * 58.58584 * 4 2 1 6 6 C 1.53191 * 109.31236 * 61.36535 * 5 4 2 7 7 N 1.46924 * 108.77741 * 305.36762 * 6 5 4 8 8 S 1.65607 * 120.63205 * 233.59008 * 7 6 5 9 9 O 1.42095 * 104.27706 * 209.17983 * 8 7 6 10 10 O 1.42103 * 104.27245 * 337.02995 * 8 7 6 11 11 C 1.81395 * 104.45177 * 93.10231 * 8 7 6 12 12 C 1.53006 * 109.46907 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46893 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00024 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99781 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47297 * 60.00334 * 17 15 13 19 19 H 1.48505 * 109.47294 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47316 * 300.00274 * 17 15 13 21 21 C 1.46924 * 118.73977 * 53.60542 * 7 6 5 22 22 H 1.09000 * 109.70175 * 66.25286 * 21 7 6 23 23 C 1.50699 * 109.58801 * 186.60862 * 21 7 6 24 24 O 1.20827 * 120.00417 * 49.52784 * 23 21 7 25 25 O 1.34233 * 120.00270 * 229.53911 * 23 21 7 26 26 H 1.09007 * 109.47215 * 299.93590 * 1 2 3 27 27 H 1.09000 * 109.47236 * 59.93199 * 1 2 3 28 28 H 1.08998 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47149 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46986 * 300.06207 * 3 2 1 31 31 H 1.09000 * 109.47230 * 60.06798 * 3 2 1 32 32 H 1.08993 * 109.45851 * 178.60674 * 4 2 1 33 33 H 1.08996 * 109.46101 * 298.56631 * 4 2 1 34 34 H 1.08995 * 109.49925 * 181.31713 * 5 4 2 35 35 H 1.09003 * 109.49938 * 301.41565 * 5 4 2 36 36 H 1.09002 * 109.59078 * 185.58061 * 6 5 4 37 37 H 1.09005 * 109.70456 * 65.22052 * 6 5 4 38 38 H 1.08996 * 109.47521 * 300.00265 * 11 8 7 39 39 H 1.09006 * 109.46819 * 60.00411 * 11 8 7 40 40 H 1.08996 * 109.47249 * 300.00435 * 12 11 8 41 41 H 1.08999 * 109.46710 * 60.00451 * 12 11 8 42 42 H 0.97006 * 119.99687 * 179.97438 * 16 15 13 43 43 H 0.96695 * 117.00336 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1554 1.2667 6 6 2.0140 -2.9040 0.0316 7 7 1.6515 -2.1385 -1.1689 8 16 0.8199 -2.8562 -2.4082 9 8 1.2373 -2.1477 -3.5670 10 8 1.0951 -4.2423 -2.2583 11 6 -0.9231 -2.5102 -2.0438 12 6 -1.8040 -3.1290 -3.1312 13 6 -3.2520 -2.8410 -2.8288 14 1 -3.5174 -2.2730 -1.9493 15 6 -4.2378 -3.3016 -3.6754 16 7 -3.9145 -3.9927 -4.7467 17 14 -6.0326 -2.9440 -3.3010 18 1 -6.2478 -1.4751 -3.2656 19 1 -6.8876 -3.5446 -4.3563 20 1 -6.3894 -3.5285 -1.9833 21 6 2.0413 -0.7241 -1.2493 22 1 3.1272 -0.6445 -1.2992 23 6 1.4321 -0.1013 -2.4790 24 8 0.2545 -0.2441 -2.7084 25 8 2.1979 0.6119 -3.3197 26 1 -0.3634 0.5129 0.8906 27 1 -0.3634 0.5149 -0.8894 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1306 1.4418 -0.0005 30 1 1.6766 1.9566 -0.8894 31 1 1.6785 1.9560 0.8906 32 1 3.1304 -0.7440 1.2355 33 1 1.6987 -0.1952 2.1390 34 1 1.8480 -2.6622 2.1678 35 1 0.4132 -2.1351 1.2547 36 1 1.5553 -3.8918 -0.0127 37 1 3.0978 -3.0064 0.0863 38 1 -1.1842 -2.9391 -1.0764 39 1 -1.0818 -1.4321 -2.0180 40 1 -1.5427 -2.6996 -4.0984 41 1 -1.6453 -4.2070 -3.1574 42 1 -4.6082 -4.3171 -5.3421 43 1 1.7623 0.9923 -4.0947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564154641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:42 Heat of formation + Delta-G solvation = -189.158777 kcal Electronic energy + Delta-G solvation = -27853.383583 eV Core-core repulsion = 24024.727607 eV Total energy + Delta-G solvation = -3828.655976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13737 -39.74050 -38.29301 -37.16564 -37.03872 -35.91751 -35.25046 -33.18880 -33.05551 -28.65779 -28.17312 -27.50395 -26.43569 -24.01341 -23.28817 -22.45354 -20.40529 -19.52677 -19.35214 -19.11863 -18.44456 -17.79255 -17.25164 -16.95445 -16.60552 -16.38711 -16.00429 -15.62743 -15.38815 -15.10735 -14.57161 -14.52199 -14.46323 -14.07875 -13.85636 -13.60885 -13.33495 -13.27160 -13.18842 -12.92141 -12.86453 -12.83373 -12.82306 -12.53513 -12.32418 -12.17593 -12.11939 -12.03452 -11.94234 -11.79796 -11.51642 -11.29032 -11.15204 -10.98372 -10.65611 -10.02479 -8.27642 -6.41817 -0.79305 1.03529 1.36666 1.41594 1.49649 1.56978 1.98485 2.35991 2.73647 3.04521 3.07275 3.46019 3.65833 3.84986 4.00079 4.08929 4.11444 4.13359 4.24608 4.25349 4.42773 4.57190 4.64217 4.74196 4.81127 4.88841 4.91475 5.01079 5.06527 5.14334 5.18306 5.19475 5.25520 5.31146 5.36198 5.43156 5.51032 5.61294 5.65045 5.80527 6.05571 6.70095 6.92851 7.27512 8.84967 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.004909 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.365514 B = 5702.071503 C = 5805.163732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.096 4.096 5 C -0.141 4.141 6 C 0.110 3.890 7 N -0.986 5.986 8 S 2.605 3.395 9 O -0.992 6.992 10 O -0.993 6.993 11 C -0.583 4.583 12 C 0.032 3.968 13 C -0.535 4.535 14 H 0.072 0.928 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.260 1.260 21 C 0.172 3.828 22 H 0.134 0.866 23 C 0.478 3.522 24 O -0.536 6.536 25 O -0.499 6.499 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.156 0.844 40 H -0.004 1.004 41 H -0.001 1.001 42 H 0.268 0.732 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.924 11.422 16.031 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.133 4.133 5 C -0.180 4.180 6 C -0.013 4.013 7 N -0.826 5.826 8 S 2.705 3.295 9 O -0.982 6.982 10 O -0.984 6.984 11 C -0.716 4.716 12 C -0.006 4.006 13 C -0.574 4.574 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.185 1.185 21 C 0.065 3.935 22 H 0.151 0.849 23 C 0.321 3.679 24 O -0.427 6.427 25 O -0.311 6.311 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.014 0.986 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 16.207 10.628 15.421 24.767 hybrid contribution -1.923 0.224 -1.031 2.193 sum 14.284 10.852 14.390 22.997 Atomic orbital electron populations 1.22284 0.94694 1.02653 1.02721 1.20932 0.96067 0.96466 0.93091 1.21906 1.02566 0.92761 1.02709 1.21550 1.01908 0.94242 0.95580 1.22086 1.01695 0.96699 0.97490 1.21874 1.02805 0.94204 0.82408 1.57580 1.71682 1.17885 1.35488 1.04893 0.78021 0.72842 0.73756 1.93428 1.81451 1.73698 1.49609 1.93477 1.84905 1.33702 1.86276 1.30624 1.19436 1.13129 1.08384 1.18691 0.96017 0.94094 0.91834 1.21415 0.90907 1.35091 1.09971 0.91032 1.26153 1.05061 0.94501 0.94547 1.70113 1.35439 1.37479 1.14534 0.85341 0.77396 0.78948 0.78420 1.18976 1.20569 1.18457 1.20812 1.02084 0.80165 0.90487 0.84860 1.23499 0.84997 0.75477 0.83910 1.90714 1.19091 1.58522 1.74403 1.84322 1.45508 1.63809 1.37486 0.90307 0.93281 0.92708 0.89960 0.93875 0.89917 0.89102 0.88892 0.87408 0.91763 0.89709 0.88020 0.85299 0.82594 0.98568 0.98250 0.92359 0.71197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 6.75 71.98 0.49 -3.25 16 2 C -0.06 -1.08 0.55 -52.10 -0.03 -1.11 16 3 C -0.14 -1.80 8.30 71.98 0.60 -1.20 16 4 C -0.10 -1.04 4.71 30.62 0.14 -0.90 16 5 C -0.14 -1.95 5.74 30.67 0.18 -1.77 16 6 C 0.11 2.19 6.33 86.36 0.55 2.74 16 7 N -0.99 -27.09 2.65 -494.65 -1.31 -28.40 16 8 S 2.60 106.08 4.73 -56.49 -0.27 105.81 16 9 O -0.99 -45.10 13.91 -117.96 -1.64 -46.74 16 10 O -0.99 -44.88 16.62 -127.65 -2.12 -47.00 16 11 C -0.58 -25.92 4.50 71.98 0.32 -25.59 16 12 C 0.03 1.88 4.98 29.85 0.15 2.03 16 13 C -0.53 -31.87 9.11 25.60 0.23 -31.63 16 14 H 0.07 3.98 7.74 -2.91 -0.02 3.95 16 15 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 16 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 17 Si 0.98 45.27 29.54 68.60 2.03 47.30 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 C 0.17 3.94 2.53 44.23 0.11 4.06 16 22 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 23 C 0.48 14.23 3.45 71.24 0.25 14.48 16 24 O -0.54 -20.05 9.63 29.56 0.28 -19.77 16 25 O -0.50 -12.33 13.42 -50.05 -0.67 -13.00 16 26 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.05 1.36 5.81 -2.39 -0.01 1.34 16 28 H 0.05 1.38 4.40 -2.39 -0.01 1.37 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.68 7.42 -2.39 -0.02 0.66 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.08 6.34 -2.39 -0.02 1.06 16 36 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 37 H 0.10 1.47 8.14 -2.38 -0.02 1.46 16 38 H 0.13 5.05 8.09 -2.39 -0.02 5.03 16 39 H 0.16 6.81 4.51 -2.39 -0.01 6.79 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 43 H 0.43 8.13 9.10 -74.06 -0.67 7.46 16 Total: -1.00 -83.87 337.66 0.38 -83.49 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.36 Total: 19.60 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 3.45 Total: -41.97 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.03 Total: -87.72 kcal Atomic # 8 Polarization: -122.36 SS G_CDS: -4.15 Total: -126.51 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 106.08 SS G_CDS: -0.27 Total: 105.81 kcal Total: -83.87 0.38 -83.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564154641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.668 kcal (2) G-P(sol) polarization free energy of solvation -83.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds