Wall clock time and date at job start Tue Mar 31 2020 12:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47109 * 2 1 4 4 C 1.52992 * 109.47073 * 120.00328 * 2 1 3 5 5 H 1.09007 * 109.47452 * 183.64492 * 4 2 1 6 6 C 1.53003 * 109.47480 * 303.64705 * 4 2 1 7 7 C 1.50700 * 109.47414 * 185.00150 * 6 4 2 8 8 O 1.20831 * 119.99544 * 359.97438 * 7 6 4 9 9 O 1.34225 * 119.99969 * 179.72738 * 7 6 4 10 10 N 1.46505 * 109.47219 * 63.64972 * 4 2 1 11 11 S 1.65597 * 120.00097 * 92.32519 * 10 4 2 12 12 O 1.42100 * 104.27450 * 181.96020 * 11 10 4 13 13 O 1.42099 * 104.28048 * 309.81802 * 11 10 4 14 14 C 1.81405 * 104.44703 * 65.89103 * 11 10 4 15 15 C 1.53001 * 109.46771 * 183.52669 * 14 11 10 16 16 C 1.50705 * 115.55086 * 66.17244 * 15 14 11 17 17 H 1.08003 * 119.99977 * 271.84267 * 16 15 14 18 18 C 1.37874 * 120.00093 * 91.84765 * 16 15 14 19 19 N 1.31514 * 120.00030 * 4.09283 * 18 16 15 20 20 Si 1.86802 * 119.99912 * 184.09147 * 18 16 15 21 21 H 1.48504 * 109.46828 * 89.99948 * 20 18 16 22 22 H 1.48499 * 109.46817 * 209.99704 * 20 18 16 23 23 H 1.48498 * 109.47017 * 329.99993 * 20 18 16 24 24 C 1.53005 * 117.50017 * 280.49925 * 15 14 11 25 25 C 1.52996 * 117.49859 * 211.84200 * 15 14 11 26 26 H 1.09000 * 109.46657 * 300.00069 * 1 2 3 27 27 H 1.09002 * 109.46887 * 59.99469 * 1 2 3 28 28 H 1.08992 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46674 * 240.00373 * 2 1 3 30 30 H 1.09004 * 109.47083 * 182.74676 * 3 2 1 31 31 H 1.09000 * 109.47482 * 302.75372 * 3 2 1 32 32 H 1.08999 * 109.47046 * 62.75726 * 3 2 1 33 33 H 1.09001 * 109.46553 * 65.00126 * 6 4 2 34 34 H 1.09002 * 109.46705 * 305.00289 * 6 4 2 35 35 H 0.96704 * 116.99668 * 180.27791 * 9 7 6 36 36 H 0.97001 * 119.99437 * 272.32449 * 10 4 2 37 37 H 1.08997 * 109.46566 * 303.52172 * 14 11 10 38 38 H 1.08993 * 109.47103 * 63.52933 * 14 11 10 39 39 H 0.97001 * 119.99903 * 185.01083 * 19 18 16 40 40 H 1.08996 * 117.49629 * 0.02562 * 24 15 14 41 41 H 1.09004 * 117.49887 * 145.01699 * 24 15 14 42 42 H 1.09005 * 117.49977 * 214.97738 * 25 15 14 43 43 H 1.09000 * 117.49810 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1281 -0.6651 1.2825 6 6 1.4565 -0.0551 2.4968 7 6 2.0534 -0.6854 3.7286 8 8 2.8622 -1.5765 3.6198 9 8 1.6903 -0.2536 4.9466 10 7 1.6248 -2.1256 1.2059 11 16 2.6271 -3.2654 0.5438 12 8 1.8880 -4.4758 0.6324 13 8 2.9927 -2.7209 -0.7168 14 6 4.0587 -3.3107 1.6571 15 6 5.1079 -4.2747 1.0995 16 6 5.7491 -3.8574 -0.1989 17 1 5.2951 -4.1344 -1.1389 18 6 6.9153 -3.1220 -0.1869 19 7 7.5116 -2.8535 0.9542 20 14 7.6485 -2.5072 -1.7912 21 1 7.0975 -1.1643 -2.1047 22 1 9.1248 -2.4179 -1.6586 23 1 7.3058 -3.4506 -2.8856 24 6 4.8852 -5.7710 1.3286 25 6 5.9773 -5.0315 2.1055 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1290 1.4429 -0.0492 31 1 1.6370 1.9704 -0.8642 32 1 1.7176 1.9418 0.9137 33 1 0.3748 -0.1890 2.5079 34 1 1.6907 1.0094 2.4834 35 1 2.1033 -0.6858 5.7067 36 1 0.7627 -2.3876 1.5652 37 1 4.4885 -2.3123 1.7369 38 1 3.7414 -3.6498 2.6432 39 1 8.2907 -2.2759 0.9701 40 1 3.9911 -6.0686 1.8762 41 1 5.2028 -6.4536 0.5403 42 1 7.0130 -5.2280 1.8281 43 1 5.8021 -4.8424 3.1646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566311148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:34 Heat of formation + Delta-G solvation = -152.640366 kcal Electronic energy + Delta-G solvation = -27103.813569 eV Core-core repulsion = 23276.741149 eV Total energy + Delta-G solvation = -3827.072419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41138 -37.96362 -36.62140 -36.15671 -36.01125 -34.98886 -32.76736 -31.91182 -30.17901 -28.05296 -27.18581 -25.33694 -24.80827 -21.84527 -21.05666 -19.67281 -19.40859 -18.60672 -18.09796 -17.30537 -16.72950 -16.24306 -16.09105 -15.49830 -14.94099 -14.65271 -14.47710 -14.27142 -14.13868 -13.72439 -13.26534 -13.10983 -13.02190 -12.76741 -12.06728 -11.87715 -11.76075 -11.70045 -11.57693 -11.37798 -11.25674 -11.13662 -11.11003 -10.96926 -10.89491 -10.82926 -10.54817 -10.50021 -10.37164 -10.30524 -9.96332 -9.56938 -9.13215 -8.98485 -8.38870 -7.94256 -6.03240 -4.13329 1.20028 2.20409 2.94523 3.35267 3.40240 3.47333 3.48499 4.40624 4.44579 4.66252 4.77100 4.87692 5.00803 5.08326 5.19519 5.23046 5.27810 5.32997 5.36085 5.47730 5.58325 5.74738 5.82703 5.88385 5.92845 6.10864 6.13215 6.14039 6.34721 6.41888 6.46677 6.48903 6.54724 6.79364 6.84735 7.15201 7.28449 7.39425 7.62333 7.87226 7.90031 8.32793 8.93032 9.55711 11.03525 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.005791 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.486481 B = 4834.025777 C = 5300.104266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.151 4.151 4 C 0.173 3.827 5 H 0.097 0.903 6 C -0.124 4.124 7 C 0.469 3.531 8 O -0.492 6.492 9 O -0.524 6.524 10 N -1.121 6.121 11 S 2.604 3.396 12 O -0.983 6.983 13 O -0.949 6.949 14 C -0.535 4.535 15 C 0.033 3.967 16 C -0.503 4.503 17 H 0.069 0.931 18 C 0.077 3.923 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.270 1.270 24 C -0.219 4.219 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.409 0.591 36 H 0.406 0.594 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 9.460 6.060 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.209 4.209 4 C 0.064 3.936 5 H 0.115 0.885 6 C -0.163 4.163 7 C 0.310 3.690 8 O -0.378 6.378 9 O -0.337 6.337 10 N -0.875 5.875 11 S 2.702 3.298 12 O -0.973 6.973 13 O -0.939 6.939 14 C -0.668 4.668 15 C 0.030 3.970 16 C -0.541 4.541 17 H 0.088 0.912 18 C -0.127 4.127 19 N -0.512 5.512 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.195 1.195 24 C -0.257 4.257 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.268 0.732 36 H 0.238 0.762 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.979 9.013 4.870 16.536 hybrid contribution 0.668 0.354 0.680 1.016 sum -12.312 9.368 5.550 16.436 Atomic orbital electron populations 1.21875 0.95165 1.02001 1.01491 1.21713 0.96357 0.96506 0.99225 1.21923 1.01897 0.95396 1.01694 1.20563 0.99977 0.80826 0.92191 0.88545 1.21878 1.03026 1.02372 0.89008 1.23503 0.79692 0.81109 0.84661 1.90832 1.31365 1.28665 1.86976 1.84503 1.67891 1.64169 1.17131 1.55969 1.32425 1.18482 1.80654 1.05244 0.75721 0.72567 0.76286 1.93493 1.70714 1.45279 1.87852 1.93531 1.83779 1.77960 1.38584 1.29836 1.15030 1.09758 1.12210 1.18416 0.95440 0.86082 0.97035 1.20569 1.07796 1.35424 0.90293 0.91245 1.24948 0.95811 0.95581 0.96323 1.70051 1.20672 1.35422 1.25063 0.86614 0.77709 0.79843 0.84155 1.20191 1.21377 1.19486 1.23277 1.00759 0.97323 1.04314 1.22452 0.96136 1.03293 0.94538 0.92768 0.92595 0.92337 0.88067 0.91952 0.92211 0.92676 0.86919 0.86331 0.73196 0.76207 0.85570 0.87625 0.93019 0.90963 0.89685 0.88894 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.62 37.16 0.32 -1.08 16 2 C -0.12 -1.40 2.87 -90.62 -0.26 -1.66 16 3 C -0.15 -1.48 9.00 37.16 0.33 -1.15 16 4 C 0.17 2.22 1.41 -67.93 -0.10 2.12 16 5 H 0.10 1.43 6.95 -51.92 -0.36 1.07 16 6 C -0.12 -1.14 4.63 -27.88 -0.13 -1.27 16 7 C 0.47 5.29 8.19 36.01 0.29 5.58 16 8 O -0.49 -7.48 13.78 -18.75 -0.26 -7.74 16 9 O -0.52 -4.58 13.42 -39.24 -0.53 -5.10 16 10 N -1.12 -16.56 3.93 -4.89 -0.02 -16.58 16 11 S 2.60 53.55 5.27 -107.50 -0.57 52.99 16 12 O -0.98 -22.17 18.08 -57.54 -1.04 -23.21 16 13 O -0.95 -22.18 15.95 -57.54 -0.92 -23.10 16 14 C -0.53 -11.86 4.56 37.16 0.17 -11.69 16 15 C 0.03 0.83 1.53 -155.66 -0.24 0.60 16 16 C -0.50 -14.12 7.88 -34.44 -0.27 -14.40 16 17 H 0.07 2.00 7.82 -52.48 -0.41 1.59 16 18 C 0.08 2.15 5.41 -17.82 -0.10 2.05 16 19 N -0.88 -24.66 12.08 55.43 0.67 -23.99 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.22 -5.15 9.96 -26.69 -0.27 -5.42 16 25 C -0.12 -3.05 8.88 -26.70 -0.24 -3.29 16 26 H 0.05 0.39 6.48 -51.93 -0.34 0.05 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 7.64 -51.93 -0.40 0.19 16 29 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.41 6.29 -51.93 -0.33 0.09 16 33 H 0.11 0.79 6.66 -51.93 -0.35 0.44 16 34 H 0.12 0.83 6.24 -51.93 -0.32 0.51 16 35 H 0.41 2.22 9.10 45.56 0.41 2.64 16 36 H 0.41 4.97 8.69 -34.47 -0.30 4.67 16 37 H 0.13 2.88 7.14 -51.93 -0.37 2.50 16 38 H 0.11 2.18 7.38 -51.93 -0.38 1.80 16 39 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 42 H 0.09 2.41 7.77 -51.93 -0.40 2.01 16 43 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -35.31 358.75 -8.33 -43.64 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.58 Total: 10.53 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -0.48 Total: -29.60 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.65 Total: -40.56 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -2.74 Total: -59.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.57 Total: 52.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.31 -8.33 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566311148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.999 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds