Wall clock time and date at job start Tue Mar 31 2020 12:39:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.46862 * 2 1
4 4 C 1.53005 * 109.47155 * 240.00686 * 2 1 3
5 5 C 1.52998 * 109.47359 * 120.00331 * 2 1 3
6 6 H 1.08998 * 109.46814 * 300.00204 * 5 2 1
7 7 N 1.46499 * 109.47176 * 60.00158 * 5 2 1
8 8 S 1.65598 * 119.99968 * 215.00067 * 7 5 2
9 9 O 1.42097 * 104.27922 * 308.92688 * 8 7 5
10 10 O 1.42096 * 104.27511 * 181.06966 * 8 7 5
11 11 C 1.81400 * 104.44970 * 64.99996 * 8 7 5
12 12 C 1.52994 * 109.47339 * 180.98911 * 11 8 7
13 13 C 1.50704 * 115.54995 * 294.67768 * 12 11 8
14 14 H 1.08008 * 119.99904 * 95.18567 * 13 12 11
15 15 C 1.37870 * 120.00168 * 274.91205 * 13 12 11
16 16 N 1.31516 * 120.00075 * 6.44879 * 15 13 12
17 17 Si 1.86796 * 120.00293 * 186.44620 * 15 13 12
18 18 H 1.48507 * 109.47044 * 89.99956 * 17 15 13
19 19 H 1.48497 * 109.47651 * 210.00217 * 17 15 13
20 20 H 1.48501 * 109.47112 * 330.00326 * 17 15 13
21 21 C 1.53002 * 117.50006 * 80.34485 * 12 11 8
22 22 C 1.52997 * 117.50193 * 149.00691 * 12 11 8
23 23 C 1.50698 * 109.46894 * 180.02562 * 5 2 1
24 24 O 1.20825 * 119.99489 * 239.99652 * 23 5 2
25 25 O 1.34225 * 120.00228 * 60.00408 * 23 5 2
26 26 H 1.08993 * 109.47187 * 299.99331 * 1 2 3
27 27 H 1.09002 * 109.47625 * 60.00098 * 1 2 3
28 28 H 1.09009 * 109.46870 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46841 * 179.97438 * 3 2 1
30 30 H 1.08995 * 109.47291 * 300.00369 * 3 2 1
31 31 H 1.09010 * 109.46676 * 60.00300 * 3 2 1
32 32 H 1.08998 * 109.46707 * 299.99656 * 4 2 1
33 33 H 1.08995 * 109.47280 * 59.99459 * 4 2 1
34 34 H 1.08998 * 109.47138 * 180.02562 * 4 2 1
35 35 H 0.97003 * 120.00135 * 34.99952 * 7 5 2
36 36 H 1.09004 * 109.47349 * 60.98958 * 11 8 7
37 37 H 1.08997 * 109.47198 * 300.99233 * 11 8 7
38 38 H 0.96996 * 120.00153 * 185.08490 * 16 15 13
39 39 H 1.08997 * 117.50087 * 215.00428 * 21 12 11
40 40 H 1.09001 * 117.49579 * 0.02983 * 21 12 11
41 41 H 1.09000 * 117.50016 * 359.97438 * 22 12 11
42 42 H 1.09005 * 117.50204 * 144.97601 * 22 12 11
43 43 H 0.96702 * 117.00374 * 179.97438 * 25 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7211 -1.2494
5 6 2.0400 -0.7213 1.2492
6 1 1.6767 -0.2075 2.1391
7 7 1.5518 -2.1025 1.2491
8 16 1.1580 -2.8416 2.6777
9 8 2.2950 -2.6347 3.5044
10 8 0.7580 -4.1507 2.2964
11 6 -0.2612 -1.8981 3.2993
12 6 -0.7081 -2.4755 4.6438
13 6 -1.2540 -3.8795 4.5990
14 1 -0.6055 -4.7180 4.8063
15 6 -2.5826 -4.0934 4.2988
16 7 -3.3433 -3.0866 3.9280
17 14 -3.3022 -5.8129 4.4188
18 1 -3.8330 -6.0330 5.7882
19 1 -4.4023 -5.9592 3.4321
20 1 -2.2434 -6.8138 4.1317
21 6 0.0830 -2.0646 5.8873
22 6 -1.3251 -1.5098 5.6575
23 6 3.5470 -0.7207 1.2494
24 8 4.1515 -1.7669 1.2493
25 8 4.2177 0.4420 1.2498
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0278 -0.0005
29 1 3.1299 1.4426 0.0005
30 1 1.6765 1.9564 -0.8899
31 1 1.6765 1.9563 0.8901
32 1 1.6767 -1.7488 -1.2494
33 1 1.6766 -0.2073 -2.1393
34 1 3.1300 -0.7215 -1.2491
35 1 1.4591 -2.5842 0.4122
36 1 -1.0819 -1.9634 2.5850
37 1 0.0252 -0.8545 3.4293
38 1 -4.2935 -3.2225 3.7883
39 1 0.2086 -2.8096 6.6728
40 1 0.9216 -1.3824 5.7475
41 1 -1.4121 -0.4629 5.3667
42 1 -2.1260 -1.8897 6.2917
43 1 5.1834 0.3918 1.2503
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593254611.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:52
Heat of formation + Delta-G solvation = -145.856378 kcal
Electronic energy + Delta-G solvation = -27110.742445 eV
Core-core repulsion = 23283.964202 eV
Total energy + Delta-G solvation = -3826.778244 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.133 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.68394 -37.81649 -36.79595 -36.30661 -36.11602 -35.10445 -33.22660 -32.05066
-28.29625 -27.96048 -27.46353 -26.72727 -25.47012 -22.08282 -21.24759 -19.88988
-19.50509 -18.74565 -17.98515 -17.30749 -16.83082 -16.34660 -15.95059 -15.77594
-15.00828 -14.71445 -14.42541 -14.24735 -13.86532 -13.82352 -13.64491 -13.25250
-13.10739 -12.34198 -12.21782 -11.95785 -11.88655 -11.85315 -11.72952 -11.43115
-11.30471 -11.20713 -11.08958 -10.98357 -10.93520 -10.89180 -10.82948 -10.68902
-10.59209 -10.48087 -10.13155 -9.77367 -9.45192 -8.97784 -8.56670 -8.14308
-6.15923 -4.25742 0.96710 2.24620 2.89047 3.29528 3.34678 3.36338
3.44864 4.26912 4.37822 4.49565 4.52711 4.72037 4.95430 4.99518
5.06701 5.12771 5.17474 5.23090 5.44557 5.52830 5.59441 5.65436
5.68040 5.78256 5.79030 5.90602 5.99511 6.08393 6.15141 6.21416
6.29893 6.33391 6.48940 6.56421 6.68477 6.94912 7.09076 7.20151
7.36300 7.79805 7.92573 8.17605 8.80805 9.45995 10.92405
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.018561 B = 0.004720 C = 0.004585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1508.190021 B = 5930.164276 C = 6104.977008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.067 4.067
3 C -0.154 4.154
4 C -0.148 4.148
5 C 0.177 3.823
6 H 0.119 0.881
7 N -1.107 6.107
8 S 2.599 3.401
9 O -0.966 6.966
10 O -0.940 6.940
11 C -0.553 4.553
12 C 0.042 3.958
13 C -0.511 4.511
14 H 0.069 0.931
15 C 0.081 3.919
16 N -0.875 5.875
17 Si 0.889 3.111
18 H -0.279 1.279
19 H -0.284 1.284
20 H -0.267 1.267
21 C -0.211 4.211
22 C -0.138 4.138
23 C 0.463 3.537
24 O -0.490 6.490
25 O -0.513 6.513
26 H 0.064 0.936
27 H 0.063 0.937
28 H 0.067 0.933
29 H 0.081 0.919
30 H 0.060 0.940
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.066 0.934
34 H 0.053 0.947
35 H 0.417 0.583
36 H 0.138 0.862
37 H 0.096 0.904
38 H 0.262 0.738
39 H 0.087 0.913
40 H 0.075 0.925
41 H 0.067 0.933
42 H 0.087 0.913
43 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.373 11.656 -9.310 17.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.069 4.069
3 C -0.211 4.211
4 C -0.205 4.205
5 C 0.066 3.934
6 H 0.137 0.863
7 N -0.863 5.863
8 S 2.696 3.304
9 O -0.956 6.956
10 O -0.930 6.930
11 C -0.686 4.686
12 C 0.039 3.961
13 C -0.548 4.548
14 H 0.087 0.913
15 C -0.124 4.124
16 N -0.511 5.511
17 Si 0.716 3.284
18 H -0.205 1.205
19 H -0.210 1.210
20 H -0.191 1.191
21 C -0.248 4.248
22 C -0.177 4.177
23 C 0.302 3.698
24 O -0.375 6.375
25 O -0.325 6.325
26 H 0.083 0.917
27 H 0.082 0.918
28 H 0.086 0.914
29 H 0.100 0.900
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.085 0.915
34 H 0.072 0.928
35 H 0.252 0.748
36 H 0.156 0.844
37 H 0.115 0.885
38 H 0.072 0.928
39 H 0.106 0.894
40 H 0.093 0.907
41 H 0.085 0.915
42 H 0.105 0.895
43 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges 8.441 10.717 -8.931 16.305
hybrid contribution -0.364 -0.534 -0.339 0.729
sum 8.077 10.183 -9.270 15.964
Atomic orbital electron populations
1.21931 0.92397 1.03305 1.02718 1.20779 0.97317 0.95999 0.92823
1.22123 1.03193 0.93528 1.02275 1.21953 1.00888 1.00775 0.96911
1.20259 0.86340 0.84578 1.02190 0.86327 1.56090 1.80761 1.21941
1.27496 1.05541 0.76578 0.75411 0.72853 1.93527 1.48230 1.86348
1.67446 1.93570 1.84197 1.34558 1.80718 1.30033 1.17668 1.09991
1.10890 1.18295 0.99424 0.95574 0.82796 1.20553 0.95539 0.89466
1.49229 0.91297 1.24925 0.97080 0.97209 0.93159 1.70002 1.05681
1.31246 1.44133 0.86602 0.79022 0.84899 0.77853 1.20453 1.21013
1.19097 1.23233 0.94624 1.04069 1.02912 1.22541 0.94412 0.96663
1.04083 1.24057 0.92194 0.81299 0.72275 1.90733 1.69867 1.33238
1.43654 1.84626 1.26268 1.35802 1.85823 0.91683 0.91773 0.91441
0.90018 0.92094 0.92003 0.91921 0.91479 0.92761 0.74801 0.84389
0.88511 0.92791 0.89448 0.90674 0.91479 0.89491 0.73863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.42 8.32 37.16 0.31 -1.11 16
2 C -0.07 -0.66 0.62 -154.51 -0.10 -0.75 16
3 C -0.15 -1.25 7.95 37.16 0.30 -0.95 16
4 C -0.15 -1.37 8.04 37.16 0.30 -1.07 16
5 C 0.18 2.27 1.89 -69.08 -0.13 2.14 16
6 H 0.12 1.38 7.13 -51.93 -0.37 1.01 16
7 N -1.11 -16.95 4.05 -5.88 -0.02 -16.97 16
8 S 2.60 52.99 5.18 -107.50 -0.56 52.44 16
9 O -0.97 -21.79 17.78 -57.54 -1.02 -22.81 16
10 O -0.94 -22.78 17.47 -57.54 -1.01 -23.79 16
11 C -0.55 -11.10 5.82 37.15 0.22 -10.89 16
12 C 0.04 0.99 1.33 -155.66 -0.21 0.78 16
13 C -0.51 -13.85 7.97 -34.44 -0.27 -14.12 16
14 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16
15 C 0.08 2.18 5.39 -17.82 -0.10 2.09 16
16 N -0.88 -23.59 12.93 55.43 0.72 -22.87 16
17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
21 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16
22 C -0.14 -3.05 9.43 -26.69 -0.25 -3.30 16
23 C 0.46 6.32 6.33 36.00 0.23 6.55 16
24 O -0.49 -8.59 17.19 -18.75 -0.32 -8.91 16
25 O -0.51 -4.90 10.34 -39.25 -0.41 -5.30 16
26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.07 0.72 7.61 -51.92 -0.39 0.32 16
29 H 0.08 0.67 5.32 -51.93 -0.28 0.39 16
30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16
32 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16
33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16
35 H 0.42 5.71 6.99 -34.47 -0.24 5.47 16
36 H 0.14 2.83 8.14 -51.92 -0.42 2.41 16
37 H 0.10 1.58 7.36 -51.93 -0.38 1.19 16
38 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16
39 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16
40 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16
41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16
42 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16
43 H 0.40 2.30 9.10 45.56 0.41 2.72 16
LS Contribution 363.64 15.07 5.48 5.48
Total: -1.00 -35.21 363.64 -7.87 -43.09
By element:
Atomic # 1 Polarization: 14.60 SS G_CDS: -5.74 Total: 8.87 kcal
Atomic # 6 Polarization: -25.49 SS G_CDS: 0.03 Total: -25.46 kcal
Atomic # 7 Polarization: -40.54 SS G_CDS: 0.69 Total: -39.84 kcal
Atomic # 8 Polarization: -58.06 SS G_CDS: -2.76 Total: -60.81 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: 52.99 SS G_CDS: -0.56 Total: 52.44 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -35.21 -7.87 -43.09 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593254611.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.771 kcal
(2) G-P(sol) polarization free energy of solvation -35.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds