Wall clock time and date at job start Tue Mar 31 2020 12:39:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.46862 * 2 1
4 4 C 1.53005 * 109.47155 * 240.00686 * 2 1 3
5 5 C 1.52998 * 109.47359 * 120.00331 * 2 1 3
6 6 H 1.08998 * 109.46814 * 300.00204 * 5 2 1
7 7 N 1.46499 * 109.47176 * 60.00158 * 5 2 1
8 8 S 1.65598 * 119.99968 * 215.00067 * 7 5 2
9 9 O 1.42097 * 104.27922 * 308.92688 * 8 7 5
10 10 O 1.42096 * 104.27511 * 181.06966 * 8 7 5
11 11 C 1.81400 * 104.44970 * 64.99996 * 8 7 5
12 12 C 1.52994 * 109.47339 * 180.98911 * 11 8 7
13 13 C 1.50704 * 115.54995 * 294.67768 * 12 11 8
14 14 H 1.08008 * 119.99904 * 95.18567 * 13 12 11
15 15 C 1.37870 * 120.00168 * 274.91205 * 13 12 11
16 16 N 1.31516 * 120.00075 * 6.44879 * 15 13 12
17 17 Si 1.86796 * 120.00293 * 186.44620 * 15 13 12
18 18 H 1.48507 * 109.47044 * 89.99956 * 17 15 13
19 19 H 1.48497 * 109.47651 * 210.00217 * 17 15 13
20 20 H 1.48501 * 109.47112 * 330.00326 * 17 15 13
21 21 C 1.53002 * 117.50006 * 80.34485 * 12 11 8
22 22 C 1.52997 * 117.50193 * 149.00691 * 12 11 8
23 23 C 1.50698 * 109.46894 * 180.02562 * 5 2 1
24 24 O 1.20825 * 119.99489 * 239.99652 * 23 5 2
25 25 O 1.34225 * 120.00228 * 60.00408 * 23 5 2
26 26 H 1.08993 * 109.47187 * 299.99331 * 1 2 3
27 27 H 1.09002 * 109.47625 * 60.00098 * 1 2 3
28 28 H 1.09009 * 109.46870 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46841 * 179.97438 * 3 2 1
30 30 H 1.08995 * 109.47291 * 300.00369 * 3 2 1
31 31 H 1.09010 * 109.46676 * 60.00300 * 3 2 1
32 32 H 1.08998 * 109.46707 * 299.99656 * 4 2 1
33 33 H 1.08995 * 109.47280 * 59.99459 * 4 2 1
34 34 H 1.08998 * 109.47138 * 180.02562 * 4 2 1
35 35 H 0.97003 * 120.00135 * 34.99952 * 7 5 2
36 36 H 1.09004 * 109.47349 * 60.98958 * 11 8 7
37 37 H 1.08997 * 109.47198 * 300.99233 * 11 8 7
38 38 H 0.96996 * 120.00153 * 185.08490 * 16 15 13
39 39 H 1.08997 * 117.50087 * 215.00428 * 21 12 11
40 40 H 1.09001 * 117.49579 * 0.02983 * 21 12 11
41 41 H 1.09000 * 117.50016 * 359.97438 * 22 12 11
42 42 H 1.09005 * 117.50204 * 144.97601 * 22 12 11
43 43 H 0.96702 * 117.00374 * 179.97438 * 25 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7211 -1.2494
5 6 2.0400 -0.7213 1.2492
6 1 1.6767 -0.2075 2.1391
7 7 1.5518 -2.1025 1.2491
8 16 1.1580 -2.8416 2.6777
9 8 2.2950 -2.6347 3.5044
10 8 0.7580 -4.1507 2.2964
11 6 -0.2612 -1.8981 3.2993
12 6 -0.7081 -2.4755 4.6438
13 6 -1.2540 -3.8795 4.5990
14 1 -0.6055 -4.7180 4.8063
15 6 -2.5826 -4.0934 4.2988
16 7 -3.3433 -3.0866 3.9280
17 14 -3.3022 -5.8129 4.4188
18 1 -3.8330 -6.0330 5.7882
19 1 -4.4023 -5.9592 3.4321
20 1 -2.2434 -6.8138 4.1317
21 6 0.0830 -2.0646 5.8873
22 6 -1.3251 -1.5098 5.6575
23 6 3.5470 -0.7207 1.2494
24 8 4.1515 -1.7669 1.2493
25 8 4.2177 0.4420 1.2498
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0278 -0.0005
29 1 3.1299 1.4426 0.0005
30 1 1.6765 1.9564 -0.8899
31 1 1.6765 1.9563 0.8901
32 1 1.6767 -1.7488 -1.2494
33 1 1.6766 -0.2073 -2.1393
34 1 3.1300 -0.7215 -1.2491
35 1 1.4591 -2.5842 0.4122
36 1 -1.0819 -1.9634 2.5850
37 1 0.0252 -0.8545 3.4293
38 1 -4.2935 -3.2225 3.7883
39 1 0.2086 -2.8096 6.6728
40 1 0.9216 -1.3824 5.7475
41 1 -1.4121 -0.4629 5.3667
42 1 -2.1260 -1.8897 6.2917
43 1 5.1834 0.3918 1.2503
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000593254611.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:51
Heat of formation + Delta-G solvation = -172.113281 kcal
Electronic energy + Delta-G solvation = -27111.881030 eV
Core-core repulsion = 23283.964202 eV
Total energy + Delta-G solvation = -3827.916828 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.133 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.68299 -38.73216 -38.56631 -37.97594 -37.15750 -36.82165 -34.31718 -34.06825
-29.92096 -28.85716 -28.21843 -27.54352 -27.46298 -23.07157 -22.95889 -21.59796
-20.42271 -20.29573 -19.02625 -18.58671 -18.42242 -17.90982 -17.05322 -16.86033
-16.72152 -16.55484 -15.98939 -15.61817 -15.11417 -14.88632 -14.65506 -14.48769
-14.10303 -13.75474 -13.63662 -13.21000 -13.10990 -13.01590 -12.95985 -12.92144
-12.85825 -12.82662 -12.66779 -12.45801 -12.32399 -12.25055 -12.03492 -11.83333
-11.81773 -11.63238 -11.57153 -11.50912 -10.86956 -10.68484 -10.52982 -9.90729
-8.19390 -6.32497 -0.61617 1.20939 1.37717 1.40906 1.51411 1.76919
2.15615 2.41265 2.92980 3.08274 3.33838 3.42281 3.43910 3.65641
3.87447 4.00218 4.14464 4.23851 4.29462 4.44736 4.49434 4.55188
4.65165 4.81873 4.83479 4.88455 4.98327 4.98935 5.09286 5.14235
5.23275 5.24740 5.36205 5.45045 5.49681 5.61098 5.62451 5.66999
5.73030 5.92260 6.22988 6.73169 7.02480 7.39865 8.88192
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.018561 B = 0.004720 C = 0.004585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1508.190021 B = 5930.164276 C = 6104.977008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.059 4.059
3 C -0.152 4.152
4 C -0.151 4.151
5 C 0.162 3.838
6 H 0.134 0.866
7 N -1.096 6.096
8 S 2.611 3.389
9 O -0.992 6.992
10 O -0.990 6.990
11 C -0.542 4.542
12 C 0.007 3.993
13 C -0.531 4.531
14 H 0.043 0.957
15 C 0.045 3.955
16 N -0.888 5.888
17 Si 0.930 3.070
18 H -0.268 1.268
19 H -0.275 1.275
20 H -0.280 1.280
21 C -0.202 4.202
22 C -0.130 4.130
23 C 0.468 3.532
24 O -0.538 6.538
25 O -0.495 6.495
26 H 0.068 0.932
27 H 0.082 0.918
28 H 0.052 0.948
29 H 0.081 0.919
30 H 0.077 0.923
31 H 0.067 0.933
32 H 0.053 0.947
33 H 0.087 0.913
34 H 0.048 0.952
35 H 0.423 0.577
36 H 0.133 0.867
37 H 0.139 0.861
38 H 0.266 0.734
39 H 0.080 0.920
40 H 0.100 0.900
41 H 0.094 0.906
42 H 0.066 0.934
43 H 0.422 0.578
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.370 14.186 -10.100 19.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.060 4.060
3 C -0.209 4.209
4 C -0.208 4.208
5 C 0.052 3.948
6 H 0.152 0.848
7 N -0.855 5.855
8 S 2.709 3.291
9 O -0.982 6.982
10 O -0.980 6.980
11 C -0.676 4.676
12 C 0.005 3.995
13 C -0.568 4.568
14 H 0.062 0.938
15 C -0.158 4.158
16 N -0.524 5.524
17 Si 0.755 3.245
18 H -0.194 1.194
19 H -0.200 1.200
20 H -0.205 1.205
21 C -0.239 4.239
22 C -0.169 4.169
23 C 0.309 3.691
24 O -0.427 6.427
25 O -0.308 6.308
26 H 0.087 0.913
27 H 0.101 0.899
28 H 0.071 0.929
29 H 0.099 0.901
30 H 0.096 0.904
31 H 0.086 0.914
32 H 0.072 0.928
33 H 0.105 0.895
34 H 0.067 0.933
35 H 0.261 0.739
36 H 0.151 0.849
37 H 0.157 0.843
38 H 0.075 0.925
39 H 0.098 0.902
40 H 0.118 0.882
41 H 0.113 0.887
42 H 0.085 0.915
43 H 0.284 0.716
Dipole moment (debyes) X Y Z Total
from point charges 8.450 13.271 -9.720 18.493
hybrid contribution -0.287 -1.236 -0.115 1.274
sum 8.163 12.035 -9.834 17.556
Atomic orbital electron populations
1.21989 0.92182 1.02736 1.03866 1.20788 0.97351 0.96686 0.91212
1.22129 1.03159 0.92140 1.03467 1.21996 1.00570 1.00559 0.97673
1.20744 0.86242 0.83143 1.04648 0.84828 1.55542 1.80668 1.23290
1.26029 1.04850 0.76218 0.74716 0.73267 1.93486 1.49218 1.86597
1.68850 1.93497 1.84826 1.37976 1.81750 1.29832 1.16937 1.12045
1.08764 1.18423 1.01339 0.94761 0.85010 1.20690 0.95728 0.90823
1.49556 0.93835 1.25420 0.97406 0.99711 0.93231 1.70022 1.05849
1.32044 1.44470 0.85983 0.78251 0.81726 0.78495 1.19358 1.19962
1.20543 1.23283 0.95227 1.03998 1.01440 1.22514 0.93996 0.97576
1.02812 1.24162 0.92594 0.81367 0.71023 1.90728 1.70813 1.34983
1.46130 1.84576 1.27943 1.33528 1.84789 0.91319 0.89935 0.92893
0.90064 0.90416 0.91369 0.92846 0.89454 0.93293 0.73935 0.84851
0.84276 0.92514 0.90174 0.88201 0.88749 0.91487 0.71640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.51 8.32 71.98 0.60 -1.92 16
2 C -0.06 -0.99 0.62 -52.18 -0.03 -1.02 16
3 C -0.15 -1.91 7.95 71.98 0.57 -1.33 16
4 C -0.15 -2.48 8.04 71.98 0.58 -1.90 16
5 C 0.16 3.83 1.89 44.24 0.08 3.91 16
6 H 0.13 2.72 7.13 -2.39 -0.02 2.70 16
7 N -1.10 -32.89 4.05 -172.53 -0.70 -33.59 16
8 S 2.61 106.59 5.18 -56.49 -0.29 106.30 16
9 O -0.99 -44.65 17.78 -127.65 -2.27 -46.92 16
10 O -0.99 -49.56 17.47 -127.65 -2.23 -51.79 16
11 C -0.54 -21.05 5.82 71.98 0.42 -20.63 16
12 C 0.01 0.33 1.33 -52.93 -0.07 0.26 16
13 C -0.53 -29.25 7.97 25.60 0.20 -29.05 16
14 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16
15 C 0.05 2.46 5.39 84.65 0.46 2.91 16
16 N -0.89 -47.52 12.93 21.44 0.28 -47.25 16
17 Si 0.93 43.89 29.54 68.60 2.03 45.92 16
18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16
20 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16
21 C -0.20 -8.47 9.96 30.62 0.30 -8.16 16
22 C -0.13 -5.54 9.43 30.62 0.29 -5.25 16
23 C 0.47 12.01 6.33 71.24 0.45 12.46 16
24 O -0.54 -18.64 17.19 21.97 0.38 -18.26 16
25 O -0.50 -8.13 10.34 -51.37 -0.53 -8.66 16
26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
28 H 0.05 1.04 7.61 -2.38 -0.02 1.02 16
29 H 0.08 1.04 5.32 -2.39 -0.01 1.02 16
30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16
32 H 0.05 0.97 6.51 -2.39 -0.02 0.95 16
33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
34 H 0.05 0.86 7.22 -2.39 -0.02 0.84 16
35 H 0.42 11.63 6.99 -96.74 -0.68 10.95 16
36 H 0.13 5.35 8.14 -2.39 -0.02 5.33 16
37 H 0.14 4.08 7.36 -2.39 -0.02 4.06 16
38 H 0.27 13.52 8.32 -92.71 -0.77 12.75 16
39 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16
40 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16
41 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16
42 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16
43 H 0.42 3.73 9.10 -74.06 -0.67 3.06 16
Total: -1.00 -76.85 363.64 0.20 -76.65
By element:
Atomic # 1 Polarization: 27.64 SS G_CDS: -0.32 Total: 27.32 kcal
Atomic # 6 Polarization: -53.58 SS G_CDS: 3.85 Total: -49.73 kcal
Atomic # 7 Polarization: -80.41 SS G_CDS: -0.42 Total: -80.84 kcal
Atomic # 8 Polarization: -120.98 SS G_CDS: -4.65 Total: -125.63 kcal
Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal
Atomic # 16 Polarization: 106.59 SS G_CDS: -0.29 Total: 106.30 kcal
Total: -76.85 0.20 -76.65 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593254611.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.460 kcal
(2) G-P(sol) polarization free energy of solvation -76.852 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.113 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds