Wall clock time and date at job start Tue Mar 31 2020 12:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33926 * 125.61638 * 2 1 4 4 C 1.34916 * 109.38722 * 180.27534 * 3 2 1 5 5 C 1.46650 * 125.98996 * 179.73434 * 4 3 2 6 6 O 1.21700 * 119.99899 * 173.96922 * 5 4 3 7 7 N 1.34774 * 120.00082 * 353.96586 * 5 4 3 8 8 C 1.46495 * 120.00192 * 4.20511 * 7 5 4 9 9 C 1.50700 * 109.47103 * 83.45291 * 8 7 5 10 10 H 1.08001 * 119.99707 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00173 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00414 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00088 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47205 * 89.99794 * 13 11 9 15 15 H 1.48500 * 109.47126 * 210.00187 * 13 11 9 16 16 H 1.48505 * 109.46806 * 329.99921 * 13 11 9 17 17 C 1.46509 * 119.99989 * 184.20665 * 7 5 4 18 18 C 1.50695 * 109.47131 * 94.88398 * 17 7 5 19 19 C 1.34516 * 125.78638 * 89.99784 * 18 17 7 20 20 C 1.41386 * 106.83765 * 179.97438 * 19 18 17 21 21 C 1.34508 * 106.84273 * 0.02562 * 20 19 18 22 22 O 1.34298 * 108.42073 * 359.73536 * 21 20 19 23 23 C 1.36550 * 108.02108 * 359.75307 * 4 3 2 24 24 C 1.35130 * 125.61356 * 179.85035 * 2 1 3 25 25 C 1.50693 * 126.44784 * 359.97438 * 24 2 1 26 26 O 1.42901 * 109.47535 * 179.71266 * 25 24 2 27 27 H 1.09002 * 109.47047 * 270.15287 * 1 2 3 28 28 H 1.09000 * 109.47513 * 30.15325 * 1 2 3 29 29 H 1.09000 * 109.47325 * 150.15379 * 1 2 3 30 30 H 1.09000 * 109.47597 * 203.45341 * 8 7 5 31 31 H 1.09000 * 109.47116 * 323.45469 * 8 7 5 32 32 H 0.96997 * 120.00445 * 180.02562 * 12 11 9 33 33 H 1.08993 * 109.46982 * 214.88606 * 17 7 5 34 34 H 1.08999 * 109.46903 * 334.88607 * 17 7 5 35 35 H 1.07991 * 126.58499 * 0.04227 * 19 18 17 36 36 H 1.08008 * 126.57653 * 179.97438 * 20 19 18 37 37 H 1.08005 * 125.78750 * 180.02562 * 21 20 19 38 38 H 1.07999 * 126.64547 * 180.02562 * 23 4 3 39 39 H 1.09002 * 109.47293 * 59.70946 * 25 24 2 40 40 H 1.09001 * 109.46872 * 299.71673 * 25 24 2 41 41 H 0.96701 * 113.99940 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0887 0.0000 4 6 3.5823 0.7117 -0.0061 5 6 4.7413 1.6101 -0.0136 6 8 5.8649 1.1547 0.0920 7 7 4.5622 2.9401 -0.1376 8 6 3.2075 3.4967 -0.1721 9 6 2.7004 3.6721 1.2361 10 1 3.3247 3.3960 2.0731 11 6 1.4392 4.1838 1.4560 12 7 0.9968 4.3373 2.6849 13 14 0.3587 4.6593 0.0082 14 1 -0.4583 3.4900 -0.4047 15 1 -0.5381 5.7744 0.4051 16 1 1.2136 5.0914 -1.1266 17 6 5.7223 3.8293 -0.2378 18 6 6.0270 4.0958 -1.6894 19 6 5.5234 5.1015 -2.4271 20 6 6.0731 4.9736 -3.7235 21 6 6.8792 3.8971 -3.7005 22 8 6.8517 3.3726 -2.4645 23 6 3.6250 -0.6532 -0.0045 24 6 2.2939 -1.0986 0.0029 25 6 1.8297 -2.5322 0.0072 26 8 2.9647 -3.4005 0.0025 27 1 -0.3633 0.0027 1.0277 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5114 30 1 3.2246 4.4636 -0.6751 31 1 2.5492 2.8172 -0.7134 32 1 0.1094 4.6970 2.8396 33 1 5.5031 4.7706 0.2661 34 1 6.5840 3.3568 0.2335 35 1 4.8328 5.8615 -2.0931 36 1 5.8818 5.6165 -4.5700 37 1 7.4550 3.5213 -4.5334 38 1 4.5113 -1.2703 -0.0078 39 1 1.2244 -2.7208 -0.8795 40 1 1.2335 -2.7184 0.9004 41 1 2.7404 -4.3411 0.0053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:51 Heat of formation + Delta-G solvation = -40.741539 kcal Electronic energy + Delta-G solvation = -27394.861163 eV Core-core repulsion = 23437.197090 eV Total energy + Delta-G solvation = -3957.664073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.31956 -42.20465 -38.93983 -36.91523 -35.46507 -33.14412 -32.79724 -32.54437 -31.63509 -30.55187 -27.98588 -27.69270 -26.31000 -24.71970 -22.79131 -21.51157 -21.38394 -20.48022 -20.08581 -18.85604 -17.30578 -17.15342 -16.97628 -16.64434 -16.06544 -15.99201 -15.37364 -14.99597 -14.77222 -14.48293 -14.21022 -13.93810 -13.61915 -13.18359 -12.95317 -12.81260 -12.67155 -12.59839 -12.47727 -12.47274 -12.35957 -11.92072 -11.54733 -11.38517 -11.25949 -10.95669 -10.67154 -10.44925 -10.35141 -9.78582 -9.66657 -9.56383 -9.17573 -8.69857 -8.31267 -8.11004 -7.81464 -6.18990 -4.18872 1.63139 1.91115 2.64997 2.78580 3.14193 3.20283 3.24350 3.25318 3.27508 3.80382 3.87951 4.21198 4.27621 4.91988 4.97139 5.05588 5.12289 5.23810 5.24931 5.27771 5.37110 5.46248 5.54740 5.62973 5.68330 5.88553 5.94411 5.99990 6.02091 6.15833 6.27994 6.30363 6.35185 6.37538 6.71809 6.80920 6.82520 7.14410 7.39526 7.43761 7.48391 7.62125 7.94053 8.36191 8.65652 8.86104 9.40033 10.93855 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.006120 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.425272 B = 4574.068586 C = 6602.145289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 O -0.110 6.110 4 C -0.059 4.059 5 C 0.606 3.394 6 O -0.542 6.542 7 N -0.580 5.580 8 C 0.204 3.796 9 C -0.529 4.529 10 H 0.078 0.922 11 C 0.081 3.919 12 N -0.891 5.891 13 Si 0.865 3.135 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.194 3.806 18 C -0.018 4.018 19 C -0.202 4.202 20 C -0.217 4.217 21 C -0.048 4.048 22 O -0.168 6.168 23 C -0.109 4.109 24 C -0.211 4.211 25 C 0.157 3.843 26 O -0.566 6.566 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.156 0.844 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -6.986 -10.068 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 O -0.004 6.004 4 C -0.112 4.112 5 C 0.395 3.605 6 O -0.422 6.422 7 N -0.309 5.309 8 C 0.084 3.916 9 C -0.567 4.567 10 H 0.096 0.904 11 C -0.122 4.122 12 N -0.529 5.529 13 Si 0.692 3.308 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.189 1.189 17 C 0.071 3.929 18 C -0.070 4.070 19 C -0.222 4.222 20 C -0.236 4.236 21 C -0.117 4.117 22 O -0.063 6.063 23 C -0.129 4.129 24 C -0.212 4.212 25 C 0.079 3.921 26 O -0.370 6.370 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.215 0.785 38 H 0.173 0.827 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.763 -6.479 -9.785 11.867 hybrid contribution -1.233 -0.052 -0.839 1.492 sum 0.530 -6.531 -10.624 12.482 Atomic orbital electron populations 1.20382 0.85391 1.03717 1.04039 1.22438 0.94213 0.84431 1.02466 1.84625 1.15449 1.31815 1.68509 1.21847 0.82577 0.93800 1.12930 1.16639 0.85880 0.81556 0.76386 1.90794 1.22700 1.76303 1.52430 1.47877 1.08409 1.04955 1.69680 1.20099 0.77747 0.94679 0.99076 1.21253 1.01246 1.43339 0.90898 0.90411 1.24751 0.97219 0.94882 0.95319 1.69887 1.18575 1.45049 1.19430 0.87021 0.81357 0.78868 0.83533 1.19768 1.20978 1.18941 1.19788 0.90301 0.96587 0.86242 1.23182 0.95227 0.93221 0.95361 1.21680 1.04802 1.01884 0.93798 1.21793 1.02378 1.00751 0.98691 1.23990 1.04123 0.96991 0.86562 1.84097 1.53318 1.48853 1.20021 1.21492 0.97756 0.92232 1.01469 1.19759 0.93516 0.94549 1.13388 1.20167 0.86973 0.85536 0.99408 1.86523 1.33070 1.19726 1.97720 0.89429 0.90150 0.89833 0.94427 0.93860 0.92481 0.86560 0.88211 0.83352 0.83768 0.78543 0.82670 0.92958 0.92722 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.21 36.00 0.37 -0.71 16 2 C 0.02 0.33 7.31 -35.41 -0.26 0.08 16 3 O -0.11 -2.40 6.62 5.00 0.03 -2.37 16 4 C -0.06 -1.30 6.75 -36.80 -0.25 -1.54 16 5 C 0.61 13.84 7.58 -12.87 -0.10 13.74 16 6 O -0.54 -12.92 16.36 5.19 0.08 -12.84 16 7 N -0.58 -12.58 2.46 -177.99 -0.44 -13.02 16 8 C 0.20 4.70 3.85 -5.20 -0.02 4.68 16 9 C -0.53 -14.07 9.02 -34.44 -0.31 -14.38 16 10 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 13 Si 0.87 19.85 27.47 -169.99 -4.67 15.18 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 17 C 0.19 3.59 5.99 -5.19 -0.03 3.56 16 18 C -0.02 -0.32 6.90 -35.63 -0.25 -0.57 16 19 C -0.20 -3.24 10.81 -39.70 -0.43 -3.67 16 20 C -0.22 -3.02 10.91 -39.70 -0.43 -3.45 16 21 C -0.05 -0.67 12.09 29.41 0.36 -0.31 16 22 O -0.17 -2.94 10.65 5.72 0.06 -2.88 16 23 C -0.11 -2.15 9.98 -39.39 -0.39 -2.55 16 24 C -0.21 -3.61 6.10 -104.93 -0.64 -4.25 16 25 C 0.16 1.96 7.08 36.00 0.25 2.21 16 26 O -0.57 -7.11 13.08 -35.23 -0.46 -7.57 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 30 H 0.04 0.84 7.08 -51.93 -0.37 0.47 16 31 H 0.04 1.03 4.79 -51.93 -0.25 0.78 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.12 1.96 8.11 -51.93 -0.42 1.54 16 34 H 0.10 1.83 7.23 -51.93 -0.38 1.45 16 35 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.16 3.01 7.98 -52.49 -0.42 2.59 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.38 2.56 9.12 45.56 0.42 2.98 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -34.35 356.68 -5.84 -40.20 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.37 Total: 7.99 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.23 Total: -5.07 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.34 Total: -38.00 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.28 Total: -25.66 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.35 -5.84 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.545 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds