Wall clock time and date at job start Tue Mar 31 2020 13:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.53004 * 109.46890 * 240.00073 * 2 1 3 5 5 O 1.45194 * 109.46758 * 120.00440 * 2 1 3 6 6 C 1.34224 * 117.00614 * 59.99986 * 5 2 1 7 7 O 1.20832 * 119.99760 * 359.97438 * 6 5 2 8 8 C 1.50698 * 120.00415 * 179.97438 * 6 5 2 9 9 C 1.53042 * 109.46155 * 179.97438 * 8 6 5 10 10 C 1.53190 * 109.31216 * 178.62916 * 9 8 6 11 11 N 1.46921 * 108.77654 * 54.63578 * 10 9 8 12 12 S 1.65606 * 120.63289 * 126.36965 * 11 10 9 13 13 O 1.42105 * 106.40008 * 336.45758 * 12 11 10 14 14 O 1.42098 * 106.40370 * 203.53944 * 12 11 10 15 15 C 1.76193 * 107.21910 * 89.99915 * 12 11 10 16 16 H 1.08002 * 120.00351 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00314 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46652 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47242 * 119.99675 * 19 17 15 22 22 H 1.48499 * 109.47269 * 239.99877 * 19 17 15 23 23 C 1.46923 * 118.74101 * 306.64369 * 11 10 9 24 24 C 1.52760 * 109.00861 * 53.30804 * 23 11 10 25 25 H 1.09004 * 109.46914 * 300.00173 * 1 2 3 26 26 H 1.08999 * 109.46843 * 59.99766 * 1 2 3 27 27 H 1.08992 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46943 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47428 * 299.99875 * 3 2 1 30 30 H 1.08998 * 109.46957 * 59.99875 * 3 2 1 31 31 H 1.08996 * 109.46872 * 300.00140 * 4 2 1 32 32 H 1.09001 * 109.46805 * 60.00125 * 4 2 1 33 33 H 1.08993 * 109.46977 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.45844 * 299.97011 * 8 6 5 35 35 H 1.08998 * 109.49686 * 58.67465 * 9 8 6 36 36 H 1.09001 * 109.49965 * 298.58111 * 9 8 6 37 37 H 1.08997 * 109.58822 * 294.84662 * 10 9 8 38 38 H 1.08998 * 109.70344 * 174.49077 * 10 9 8 39 39 H 0.96997 * 119.99726 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.59343 * 173.14863 * 23 11 10 41 41 H 1.09010 * 109.58634 * 293.56962 * 23 11 10 42 42 H 1.09006 * 109.56563 * 185.55777 * 24 23 11 43 43 H 1.09001 * 109.35973 * 65.50306 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5081 8 6 2.1182 -2.7438 2.5435 9 6 1.5702 -4.1711 2.4742 10 6 2.0728 -4.9660 3.6834 11 7 1.7128 -4.2403 4.9091 12 16 0.8721 -4.9946 6.1203 13 8 0.1795 -6.0772 5.5139 14 8 0.2192 -3.9683 6.8549 15 6 2.0570 -5.7100 7.2104 16 1 3.1122 -5.6007 7.0080 17 6 1.6372 -6.4095 8.3220 18 7 0.3522 -6.5423 8.5687 19 14 2.8934 -7.1687 9.4774 20 1 4.2622 -6.8787 8.9798 21 1 2.7277 -6.5929 10.8361 22 1 2.6889 -8.6384 9.5343 23 6 2.1075 -2.8309 5.0375 24 6 1.6094 -2.0615 3.8154 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2491 34 1 3.2077 -2.7731 2.5584 35 1 1.9139 -4.6486 1.5566 36 1 0.4806 -4.1434 2.4843 37 1 3.1561 -5.0721 3.6264 38 1 1.6091 -5.9524 3.6933 39 1 0.0568 -7.0341 9.3509 40 1 1.6648 -2.4080 5.9393 41 1 3.1938 -2.7592 5.0931 42 1 1.9810 -1.0374 3.8524 43 1 0.5194 -2.0536 3.8129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699650685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:06 Heat of formation + Delta-G solvation = -215.434298 kcal Electronic energy + Delta-G solvation = -26125.007161 eV Core-core repulsion = 22295.211793 eV Total energy + Delta-G solvation = -3829.795369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99687 -39.43023 -37.82935 -37.45949 -36.12227 -35.19691 -35.08511 -33.43656 -32.04003 -28.37191 -28.27388 -28.24584 -26.78578 -24.35040 -23.26920 -21.45652 -20.75137 -20.48466 -19.07784 -18.48612 -18.04139 -17.46567 -17.02663 -16.92385 -16.58981 -15.96108 -15.50478 -15.38184 -15.29630 -15.14424 -14.78960 -14.44571 -14.37568 -13.95989 -13.48622 -13.45692 -13.23657 -13.13873 -13.07542 -13.01984 -12.91436 -12.83833 -12.52954 -12.49028 -12.44913 -12.29587 -12.26562 -12.11587 -12.01020 -11.59475 -11.57080 -11.35936 -11.25800 -10.92634 -10.88000 -9.78613 -8.73258 -7.47221 0.31435 1.20628 1.34333 1.35304 1.53195 1.69039 2.21814 2.58736 2.83990 3.50426 3.69929 3.71054 3.76096 3.81873 3.85601 3.97639 4.07078 4.17129 4.33244 4.39023 4.46745 4.58501 4.60869 4.70993 4.74778 4.77199 4.82745 4.83951 4.85231 4.89607 4.93134 5.01049 5.10556 5.14244 5.23310 5.26684 5.29608 5.31957 5.37674 5.57920 5.92995 6.00970 6.79548 6.83775 8.21924 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.033923 B = 0.003066 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.191401 B = 9130.340134 C = 9182.413116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.350 6.350 6 C 0.472 3.528 7 O -0.525 6.525 8 C -0.073 4.073 9 C -0.111 4.111 10 C 0.118 3.882 11 N -1.010 6.010 12 S 2.715 3.285 13 O -1.043 7.043 14 O -1.041 7.041 15 C -1.037 5.037 16 H 0.122 0.878 17 C 0.067 3.933 18 N -0.897 5.897 19 Si 0.992 3.008 20 H -0.244 1.244 21 H -0.260 1.260 22 H -0.261 1.261 23 C 0.117 3.883 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.298 0.702 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.410 13.665 -15.862 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.068 3.932 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.268 6.268 6 C 0.316 3.684 7 O -0.415 6.415 8 C -0.092 4.092 9 C -0.150 4.150 10 C -0.007 4.007 11 N -0.849 5.849 12 S 2.818 3.182 13 O -1.033 7.033 14 O -1.031 7.031 15 C -1.171 5.171 16 H 0.141 0.859 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.810 3.190 20 H -0.167 1.167 21 H -0.184 1.184 22 H -0.185 1.185 23 C -0.008 4.008 24 C -0.156 4.156 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.078 13.480 -15.996 22.424 hybrid contribution 0.186 -0.788 0.742 1.098 sum 8.264 12.693 -15.254 21.496 Atomic orbital electron populations 1.22478 0.94549 1.03314 1.03641 1.22501 0.94269 0.93647 0.82767 1.21860 1.02552 0.90745 1.04065 1.22448 1.01986 1.01931 0.97229 1.86549 1.69565 1.24841 1.45800 1.23834 0.76690 0.80806 0.87051 1.90573 1.36009 1.70560 1.44328 1.21099 1.04553 0.93495 0.90069 1.21745 1.00674 0.93770 0.98829 1.21506 1.01925 0.94997 0.82224 1.57717 1.75386 1.20499 1.31327 1.00082 0.74194 0.71791 0.72173 1.93288 1.74810 1.56618 1.78617 1.93283 1.76206 1.60797 1.72844 1.31020 1.11234 1.49797 1.25038 0.85949 1.26072 0.98166 0.92030 0.98254 1.70012 1.17015 1.36964 1.28891 0.85084 0.78506 0.78317 0.77141 1.16668 1.18419 1.18549 1.21459 1.01815 0.79003 0.98541 1.21797 1.00796 1.00715 0.92338 0.92084 0.89133 0.92459 0.90865 0.88453 0.91402 0.92198 0.89292 0.91329 0.83987 0.88378 0.93371 0.88206 0.90538 0.89192 0.90257 0.88089 0.86772 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 2 C 0.10 1.85 1.13 -10.79 -0.01 1.84 16 3 C -0.14 -1.59 8.85 71.98 0.64 -0.95 16 4 C -0.18 -3.01 8.37 71.98 0.60 -2.40 16 5 O -0.35 -7.61 9.76 -51.36 -0.50 -8.11 16 6 C 0.47 11.77 6.57 71.24 0.47 12.24 16 7 O -0.53 -15.51 11.48 21.95 0.25 -15.25 16 8 C -0.07 -1.71 2.59 -11.51 -0.03 -1.74 16 9 C -0.11 -3.11 4.65 30.67 0.14 -2.97 16 10 C 0.12 3.80 6.48 86.36 0.56 4.36 16 11 N -1.01 -39.33 3.30 -513.86 -1.69 -41.03 16 12 S 2.71 146.58 5.01 -56.49 -0.28 146.30 16 13 O -1.04 -62.95 16.61 -128.00 -2.13 -65.08 16 14 O -1.04 -62.18 16.60 -128.00 -2.12 -64.30 16 15 C -1.04 -56.64 9.75 67.74 0.66 -55.98 16 16 H 0.12 5.95 7.81 -2.91 -0.02 5.93 16 17 C 0.07 3.73 5.46 84.65 0.46 4.19 16 18 N -0.90 -53.97 13.19 21.45 0.28 -53.69 16 19 Si 0.99 40.98 29.54 68.60 2.03 43.01 16 20 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 C 0.12 3.59 6.45 86.22 0.56 4.15 16 24 C -0.12 -3.01 5.28 30.53 0.16 -2.84 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.43 5.89 -2.39 -0.01 1.42 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.33 5.89 -2.39 -0.01 1.31 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.10 2.37 8.07 -2.39 -0.02 2.35 16 36 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.08 2.81 6.92 -2.39 -0.02 2.79 16 39 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.08 2.77 6.91 -2.39 -0.02 2.75 16 41 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.11 2.24 8.08 -2.38 -0.02 2.22 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -79.30 356.32 1.64 -77.66 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.99 Total: 23.50 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 4.81 Total: -43.01 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -1.41 Total: -94.71 kcal Atomic # 8 Polarization: -148.25 SS G_CDS: -4.50 Total: -152.75 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: 146.58 SS G_CDS: -0.28 Total: 146.30 kcal Total: -79.30 1.64 -77.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699650685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.770 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds