Wall clock time and date at job start Tue Mar 31 2020 12:20:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46500 * 109.47774 * 2 1
4 4 C 1.34778 * 119.99416 * 54.37766 * 3 2 1
5 5 O 1.21596 * 120.00406 * 359.97438 * 4 3 2
6 6 C 1.47532 * 119.99728 * 180.02562 * 4 3 2
7 7 C 1.39664 * 120.19940 * 0.02562 * 6 4 3
8 8 C 1.37827 * 119.92147 * 180.02562 * 7 6 4
9 9 C 1.38574 * 120.32464 * 0.02562 * 8 7 6
10 10 C 1.38027 * 120.40160 * 0.02562 * 9 8 7
11 11 C 1.38840 * 120.06828 * 359.95743 * 10 9 8
12 12 O 1.35518 * 120.15476 * 180.02562 * 11 10 9
13 13 C 1.34809 * 117.00509 * 354.30764 * 12 11 10
14 14 H 1.08004 * 120.00003 * 5.06596 * 13 12 11
15 15 C 1.38701 * 120.00442 * 185.07452 * 13 12 11
16 16 N 1.31520 * 119.99749 * 359.97438 * 15 13 12
17 17 Si 1.86791 * 120.00447 * 179.97438 * 15 13 12
18 18 H 1.48503 * 109.47115 * 59.99833 * 17 15 13
19 19 H 1.48500 * 109.47332 * 179.97438 * 17 15 13
20 20 H 1.48499 * 109.47209 * 299.99931 * 17 15 13
21 21 C 1.50703 * 109.46932 * 239.99909 * 2 1 3
22 22 O 1.20822 * 120.00044 * 266.11412 * 21 2 1
23 23 O 1.34231 * 120.00014 * 86.11865 * 21 2 1
24 24 C 1.53004 * 109.46985 * 120.00725 * 2 1 3
25 25 C 1.53001 * 117.49443 * 243.17893 * 24 2 1
26 26 C 1.53003 * 117.50151 * 174.52115 * 24 2 1
27 27 H 1.09008 * 109.46867 * 59.99448 * 1 2 3
28 28 H 1.08996 * 109.47751 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.46980 * 300.00048 * 1 2 3
30 30 H 0.96999 * 120.00293 * 234.37716 * 3 2 1
31 31 H 1.07999 * 120.03981 * 0.27242 * 7 6 4
32 32 H 1.08004 * 119.83612 * 180.02562 * 8 7 6
33 33 H 1.08003 * 119.79935 * 179.97438 * 9 8 7
34 34 H 1.07992 * 119.96669 * 179.97438 * 10 9 8
35 35 H 0.96996 * 120.00425 * 180.02562 * 16 15 13
36 36 H 0.96700 * 117.00151 * 179.97438 * 23 21 2
37 37 H 1.08995 * 115.55224 * 28.83918 * 24 2 1
38 38 H 1.09004 * 117.50202 * 359.97438 * 25 24 2
39 39 H 1.09004 * 117.50165 * 145.02117 * 25 24 2
40 40 H 1.09001 * 117.49714 * 214.97425 * 26 24 2
41 41 H 1.08994 * 117.49321 * 359.97438 * 26 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 1.6021 2.2431 0.9488
5 8 0.8208 1.8745 1.8046
6 6 2.0936 3.6341 0.9486
7 6 2.9898 4.0624 -0.0332
8 6 3.4457 5.3631 -0.0277
9 6 3.0196 6.2497 0.9483
10 6 2.1349 5.8404 1.9255
11 6 1.6649 4.5340 1.9355
12 8 0.7958 4.1305 2.8938
13 6 0.5174 5.0097 3.8771
14 1 0.9154 6.0127 3.8333
15 6 -0.2802 4.6261 4.9451
16 7 -0.7652 3.4048 4.9983
17 14 -0.6655 5.8441 6.3079
18 1 -1.3715 7.0190 5.7367
19 1 -1.5309 5.1928 7.3238
20 1 0.5993 6.2890 6.9463
21 6 2.0322 -0.7104 -1.2305
22 8 2.3004 -1.8875 -1.1813
23 8 2.1817 -0.0356 -2.3811
24 6 2.0399 -0.7214 1.2492
25 6 2.8527 0.0964 2.2549
26 6 3.5491 -0.9416 1.3713
27 1 -0.3633 0.5140 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 2.6414 1.6753 -0.6828
31 1 3.3222 3.3763 -0.7982
32 1 4.1384 5.6929 -0.7879
33 1 3.3825 7.2669 0.9448
34 1 1.8078 6.5371 2.6830
35 1 -1.3232 3.1365 5.7449
36 1 2.5072 -0.5338 -3.1433
37 1 1.3845 -1.4974 1.6444
38 1 3.0245 1.1483 2.0264
39 1 2.7324 -0.1419 3.3117
40 1 3.8865 -1.8624 1.8472
41 1 4.1785 -0.5728 0.5615
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000736658271.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:13
Heat of formation + Delta-G solvation = -78.041410 kcal
Electronic energy + Delta-G solvation = -27740.471029 eV
Core-core repulsion = 23781.189512 eV
Total energy + Delta-G solvation = -3959.281517 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.06996 -39.63803 -38.57624 -36.76380 -36.34270 -35.97357 -33.86005 -32.36505
-31.49421 -29.58363 -28.92813 -25.54734 -25.25759 -23.14805 -22.81552 -22.00888
-21.53306 -20.20342 -19.19783 -18.38945 -17.97163 -17.86551 -16.72078 -16.17421
-15.98033 -15.37396 -14.87041 -14.67010 -14.51414 -14.22979 -13.99957 -13.83820
-13.48750 -13.32503 -12.83433 -12.54725 -12.48140 -12.40914 -11.93332 -11.73570
-11.65301 -11.47806 -11.33341 -11.12985 -11.01520 -10.89536 -10.84371 -10.62250
-10.49709 -10.08152 -10.01170 -9.55914 -8.89730 -8.76169 -8.69882 -8.30895
-7.34135 -6.47092 -4.06673 1.67348 2.00471 2.29478 2.76721 3.10561
3.12244 3.14745 3.45628 3.66600 3.91522 4.11743 4.57805 4.68683
4.96085 5.04034 5.08912 5.14693 5.29971 5.35052 5.40483 5.48446
5.60735 5.70063 5.79165 5.85426 5.91815 6.04947 6.09101 6.20273
6.28915 6.37306 6.49022 6.52279 6.56780 6.64908 6.78702 6.88894
7.03536 7.20704 7.26462 7.66404 7.73331 7.88433 8.02530 8.92512
9.01537 9.63848 10.66227
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.014632 B = 0.004582 C = 0.003822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1913.105232 B = 6109.812760 C = 7325.137118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.232 3.768
3 N -0.737 5.737
4 C 0.561 3.439
5 O -0.485 6.485
6 C -0.229 4.229
7 C -0.038 4.038
8 C -0.230 4.230
9 C -0.050 4.050
10 C -0.238 4.238
11 C 0.190 3.810
12 O -0.121 6.121
13 C -0.404 4.404
14 H 0.093 0.907
15 C 0.047 3.953
16 N -0.831 5.831
17 Si 0.939 3.061
18 H -0.269 1.269
19 H -0.277 1.277
20 H -0.269 1.269
21 C 0.484 3.516
22 O -0.499 6.499
23 O -0.513 6.513
24 C -0.147 4.147
25 C -0.143 4.143
26 C -0.177 4.177
27 H 0.063 0.937
28 H 0.065 0.935
29 H 0.115 0.885
30 H 0.398 0.602
31 H 0.111 0.889
32 H 0.109 0.891
33 H 0.110 0.890
34 H 0.132 0.868
35 H 0.272 0.728
36 H 0.408 0.592
37 H 0.116 0.884
38 H 0.103 0.897
39 H 0.097 0.903
40 H 0.093 0.907
41 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.865 -3.399 -10.966 13.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.144 3.856
3 N -0.395 5.395
4 C 0.352 3.648
5 O -0.358 6.358
6 C -0.234 4.234
7 C -0.056 4.056
8 C -0.249 4.249
9 C -0.068 4.068
10 C -0.257 4.257
11 C 0.130 3.870
12 O -0.019 6.019
13 C -0.479 4.479
14 H 0.110 0.890
15 C -0.162 4.162
16 N -0.462 5.462
17 Si 0.763 3.237
18 H -0.194 1.194
19 H -0.202 1.202
20 H -0.194 1.194
21 C 0.325 3.675
22 O -0.384 6.384
23 O -0.325 6.325
24 C -0.167 4.167
25 C -0.180 4.180
26 C -0.214 4.214
27 H 0.082 0.918
28 H 0.084 0.916
29 H 0.133 0.867
30 H 0.234 0.766
31 H 0.129 0.871
32 H 0.127 0.873
33 H 0.128 0.872
34 H 0.149 0.851
35 H 0.082 0.918
36 H 0.267 0.733
37 H 0.134 0.866
38 H 0.121 0.879
39 H 0.115 0.885
40 H 0.111 0.889
41 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 5.875 -4.175 -9.730 12.108
hybrid contribution 0.414 0.484 -0.358 0.730
sum 6.289 -3.691 -10.088 12.447
Atomic orbital electron populations
1.22321 0.90736 1.03152 1.06153 1.19440 0.96271 0.82022 0.87841
1.46014 1.50936 1.09177 1.33422 1.18070 0.81243 0.84767 0.80742
1.90921 1.32360 1.77246 1.35249 1.18778 1.09215 0.93154 1.02289
1.20778 0.93995 0.95652 0.95220 1.20461 1.07354 0.94405 1.02720
1.20906 0.94530 0.98271 0.93132 1.21161 1.04720 0.96608 1.03205
1.19244 0.87641 0.91185 0.88897 1.84158 1.48360 1.40232 1.29162
1.21431 1.32750 0.94173 0.99581 0.88991 1.25351 0.95940 0.97053
0.97811 1.70104 1.29053 1.16717 1.30306 0.85820 0.78905 0.79376
0.79576 1.19398 1.20174 1.19383 1.23563 0.73631 0.86073 0.84258
1.90717 1.45696 1.16974 1.85036 1.84572 1.79240 1.47347 1.21301
1.22318 0.94359 1.02949 0.97042 1.23090 1.00830 0.97596 0.96458
1.22936 0.93820 1.01396 1.03267 0.91779 0.91613 0.86707 0.76581
0.87078 0.87288 0.87205 0.85086 0.91820 0.73297 0.86591 0.87912
0.88503 0.88861 0.89804
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.56 8.25 37.15 0.31 -2.25 16
2 C 0.23 3.48 0.84 -132.97 -0.11 3.37 16
3 N -0.74 -11.46 4.38 -49.71 -0.22 -11.68 16
4 C 0.56 11.27 4.88 -12.47 -0.06 11.21 16
5 O -0.48 -11.74 11.25 -16.57 -0.19 -11.93 16
6 C -0.23 -4.70 5.89 -104.81 -0.62 -5.31 16
7 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16
8 C -0.23 -3.64 10.02 -39.61 -0.40 -4.03 16
9 C -0.05 -0.85 10.03 -39.53 -0.40 -1.24 16
10 C -0.24 -4.91 9.16 -39.44 -0.36 -5.27 16
11 C 0.19 4.49 6.66 -38.60 -0.26 4.24 16
12 O -0.12 -3.40 7.84 -21.03 -0.16 -3.56 16
13 C -0.40 -11.00 9.49 30.90 0.29 -10.71 16
14 H 0.09 2.28 5.21 -52.48 -0.27 2.01 16
15 C 0.05 1.25 5.49 -17.51 -0.10 1.16 16
16 N -0.83 -24.14 13.67 55.48 0.76 -23.38 16
17 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16
18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
21 C 0.48 6.32 6.61 36.01 0.24 6.56 16
22 O -0.50 -7.43 16.65 -18.75 -0.31 -7.74 16
23 O -0.51 -4.99 12.66 -39.26 -0.50 -5.48 16
24 C -0.15 -2.32 4.36 -90.62 -0.40 -2.72 16
25 C -0.14 -2.43 8.44 -26.69 -0.23 -2.66 16
26 C -0.18 -2.52 9.39 -26.69 -0.25 -2.77 16
27 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16
28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
29 H 0.11 2.18 5.77 -51.93 -0.30 1.88 16
30 H 0.40 5.25 6.00 -40.82 -0.24 5.01 16
31 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16
32 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16
33 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16
34 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16
35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
36 H 0.41 2.03 9.10 45.56 0.41 2.45 16
37 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16
38 H 0.10 1.96 5.10 -51.93 -0.26 1.69 16
39 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16
40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
41 H 0.08 1.14 7.99 -51.93 -0.42 0.72 16
LS Contribution 342.64 15.07 5.16 5.16
Total: -1.00 -33.11 342.64 -6.99 -40.10
By element:
Atomic # 1 Polarization: 18.77 SS G_CDS: -3.81 Total: 14.96 kcal
Atomic # 6 Polarization: -8.73 SS G_CDS: -2.70 Total: -11.43 kcal
Atomic # 7 Polarization: -35.60 SS G_CDS: 0.54 Total: -35.06 kcal
Atomic # 8 Polarization: -27.55 SS G_CDS: -1.16 Total: -28.71 kcal
Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -33.11 -6.99 -40.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736658271.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.940 kcal
(2) G-P(sol) polarization free energy of solvation -33.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds