Wall clock time and date at job start Tue Mar 31 2020 12:20:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46500 * 109.47774 * 2 1
4 4 C 1.34778 * 119.99416 * 54.37766 * 3 2 1
5 5 O 1.21596 * 120.00406 * 359.97438 * 4 3 2
6 6 C 1.47532 * 119.99728 * 180.02562 * 4 3 2
7 7 C 1.39664 * 120.19940 * 0.02562 * 6 4 3
8 8 C 1.37827 * 119.92147 * 180.02562 * 7 6 4
9 9 C 1.38574 * 120.32464 * 0.02562 * 8 7 6
10 10 C 1.38027 * 120.40160 * 0.02562 * 9 8 7
11 11 C 1.38840 * 120.06828 * 359.95743 * 10 9 8
12 12 O 1.35518 * 120.15476 * 180.02562 * 11 10 9
13 13 C 1.34809 * 117.00509 * 354.30764 * 12 11 10
14 14 H 1.08004 * 120.00003 * 5.06596 * 13 12 11
15 15 C 1.38701 * 120.00442 * 185.07452 * 13 12 11
16 16 N 1.31520 * 119.99749 * 359.97438 * 15 13 12
17 17 Si 1.86791 * 120.00447 * 179.97438 * 15 13 12
18 18 H 1.48503 * 109.47115 * 59.99833 * 17 15 13
19 19 H 1.48500 * 109.47332 * 179.97438 * 17 15 13
20 20 H 1.48499 * 109.47209 * 299.99931 * 17 15 13
21 21 C 1.50703 * 109.46932 * 239.99909 * 2 1 3
22 22 O 1.20822 * 120.00044 * 266.11412 * 21 2 1
23 23 O 1.34231 * 120.00014 * 86.11865 * 21 2 1
24 24 C 1.53004 * 109.46985 * 120.00725 * 2 1 3
25 25 C 1.53001 * 117.49443 * 243.17893 * 24 2 1
26 26 C 1.53003 * 117.50151 * 174.52115 * 24 2 1
27 27 H 1.09008 * 109.46867 * 59.99448 * 1 2 3
28 28 H 1.08996 * 109.47751 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.46980 * 300.00048 * 1 2 3
30 30 H 0.96999 * 120.00293 * 234.37716 * 3 2 1
31 31 H 1.07999 * 120.03981 * 0.27242 * 7 6 4
32 32 H 1.08004 * 119.83612 * 180.02562 * 8 7 6
33 33 H 1.08003 * 119.79935 * 179.97438 * 9 8 7
34 34 H 1.07992 * 119.96669 * 179.97438 * 10 9 8
35 35 H 0.96996 * 120.00425 * 180.02562 * 16 15 13
36 36 H 0.96700 * 117.00151 * 179.97438 * 23 21 2
37 37 H 1.08995 * 115.55224 * 28.83918 * 24 2 1
38 38 H 1.09004 * 117.50202 * 359.97438 * 25 24 2
39 39 H 1.09004 * 117.50165 * 145.02117 * 25 24 2
40 40 H 1.09001 * 117.49714 * 214.97425 * 26 24 2
41 41 H 1.08994 * 117.49321 * 359.97438 * 26 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 1.6021 2.2431 0.9488
5 8 0.8208 1.8745 1.8046
6 6 2.0936 3.6341 0.9486
7 6 2.9898 4.0624 -0.0332
8 6 3.4457 5.3631 -0.0277
9 6 3.0196 6.2497 0.9483
10 6 2.1349 5.8404 1.9255
11 6 1.6649 4.5340 1.9355
12 8 0.7958 4.1305 2.8938
13 6 0.5174 5.0097 3.8771
14 1 0.9154 6.0127 3.8333
15 6 -0.2802 4.6261 4.9451
16 7 -0.7652 3.4048 4.9983
17 14 -0.6655 5.8441 6.3079
18 1 -1.3715 7.0190 5.7367
19 1 -1.5309 5.1928 7.3238
20 1 0.5993 6.2890 6.9463
21 6 2.0322 -0.7104 -1.2305
22 8 2.3004 -1.8875 -1.1813
23 8 2.1817 -0.0356 -2.3811
24 6 2.0399 -0.7214 1.2492
25 6 2.8527 0.0964 2.2549
26 6 3.5491 -0.9416 1.3713
27 1 -0.3633 0.5140 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 2.6414 1.6753 -0.6828
31 1 3.3222 3.3763 -0.7982
32 1 4.1384 5.6929 -0.7879
33 1 3.3825 7.2669 0.9448
34 1 1.8078 6.5371 2.6830
35 1 -1.3232 3.1365 5.7449
36 1 2.5072 -0.5338 -3.1433
37 1 1.3845 -1.4974 1.6444
38 1 3.0245 1.1483 2.0264
39 1 2.7324 -0.1419 3.3117
40 1 3.8865 -1.8624 1.8472
41 1 4.1785 -0.5728 0.5615
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000736658271.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:12
Heat of formation + Delta-G solvation = -101.077592 kcal
Electronic energy + Delta-G solvation = -27741.469953 eV
Core-core repulsion = 23781.189512 eV
Total energy + Delta-G solvation = -3960.280441 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-42.29025 -41.06038 -40.04365 -38.18640 -37.80774 -37.07846 -35.23830 -34.27687
-32.93277 -30.99497 -30.50918 -27.35295 -26.60147 -24.59816 -23.98248 -23.27752
-23.11699 -21.61353 -20.52223 -19.83661 -19.54415 -19.05883 -18.18104 -17.51409
-17.33802 -16.55330 -16.37658 -16.15224 -16.01017 -15.80322 -15.55447 -15.31292
-14.99150 -14.63830 -14.31999 -14.16944 -13.74431 -13.64111 -13.51726 -13.28409
-12.94846 -12.72794 -12.61650 -12.57823 -12.48763 -12.35031 -12.32984 -12.13866
-11.76451 -11.41566 -11.30846 -11.23593 -10.78448 -10.32821 -10.15218 -9.78301
-8.99710 -8.40628 -6.10372 0.16327 0.76626 0.94613 1.34597 1.46411
1.51061 1.76271 2.10741 2.15142 2.18241 2.88120 2.91871 3.26125
3.45090 3.50269 3.73013 3.90677 3.98748 4.06386 4.11156 4.21013
4.30981 4.39868 4.54027 4.56825 4.64045 4.68254 4.72320 4.93530
5.01195 5.05925 5.10795 5.13806 5.17475 5.22420 5.40563 5.50346
5.52158 5.64016 5.73484 5.99301 6.19739 6.64126 6.91004 6.99169
7.52244 7.83811 8.78629
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.014632 B = 0.004582 C = 0.003822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1913.105232 B = 6109.812760 C = 7325.137118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.227 3.773
3 N -0.714 5.714
4 C 0.561 3.439
5 O -0.533 6.533
6 C -0.243 4.243
7 C -0.032 4.032
8 C -0.202 4.202
9 C -0.041 4.041
10 C -0.259 4.259
11 C 0.153 3.847
12 O -0.182 6.182
13 C -0.426 4.426
14 H 0.104 0.896
15 C -0.017 4.017
16 N -0.899 5.899
17 Si 1.016 2.984
18 H -0.256 1.256
19 H -0.275 1.275
20 H -0.256 1.256
21 C 0.502 3.498
22 O -0.514 6.514
23 O -0.500 6.500
24 C -0.156 4.156
25 C -0.168 4.168
26 C -0.144 4.144
27 H 0.074 0.926
28 H 0.082 0.918
29 H 0.073 0.927
30 H 0.413 0.587
31 H 0.157 0.843
32 H 0.161 0.839
33 H 0.151 0.849
34 H 0.122 0.878
35 H 0.269 0.731
36 H 0.434 0.566
37 H 0.113 0.887
38 H 0.081 0.919
39 H 0.078 0.922
40 H 0.110 0.890
41 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.878 -2.334 -14.653 17.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.139 3.861
3 N -0.372 5.372
4 C 0.352 3.648
5 O -0.410 6.410
6 C -0.248 4.248
7 C -0.050 4.050
8 C -0.220 4.220
9 C -0.059 4.059
10 C -0.278 4.278
11 C 0.097 3.903
12 O -0.084 6.084
13 C -0.502 4.502
14 H 0.121 0.879
15 C -0.217 4.217
16 N -0.535 5.535
17 Si 0.835 3.165
18 H -0.180 1.180
19 H -0.200 1.200
20 H -0.181 1.181
21 C 0.342 3.658
22 O -0.402 6.402
23 O -0.314 6.314
24 C -0.175 4.175
25 C -0.205 4.205
26 C -0.181 4.181
27 H 0.093 0.907
28 H 0.101 0.899
29 H 0.092 0.908
30 H 0.252 0.748
31 H 0.174 0.826
32 H 0.179 0.821
33 H 0.168 0.832
34 H 0.140 0.860
35 H 0.078 0.922
36 H 0.298 0.702
37 H 0.131 0.869
38 H 0.099 0.901
39 H 0.097 0.903
40 H 0.128 0.872
41 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 8.967 -3.083 -13.536 16.526
hybrid contribution -0.235 0.199 0.357 0.472
sum 8.732 -2.883 -13.179 16.070
Atomic orbital electron populations
1.22214 0.91478 1.03788 1.04579 1.19430 0.95944 0.81516 0.89207
1.45685 1.50235 1.08966 1.32355 1.18165 0.80591 0.85266 0.80772
1.90933 1.34587 1.78089 1.37358 1.19247 1.09796 0.93171 1.02550
1.21298 0.92034 0.97141 0.94550 1.21143 1.05537 0.93274 1.02050
1.21410 0.92407 1.00539 0.91573 1.21299 1.06295 0.95468 1.04746
1.20018 0.88019 0.93228 0.89009 1.84163 1.51799 1.41386 1.31041
1.21915 1.33168 0.94813 1.00268 0.87916 1.26610 0.95660 0.99054
1.00380 1.70292 1.31908 1.19544 1.31733 0.84705 0.79062 0.76824
0.75942 1.17984 1.19962 1.18063 1.22753 0.73289 0.85343 0.84379
1.90730 1.46535 1.17494 1.85410 1.84486 1.78726 1.47103 1.21134
1.22394 0.95642 1.02520 0.96989 1.22894 1.04161 0.97198 0.96246
1.23009 0.92671 1.00459 1.01965 0.90687 0.89933 0.90835 0.74808
0.82580 0.82128 0.83150 0.86045 0.92171 0.70233 0.86937 0.90064
0.90321 0.87208 0.88223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.11 8.25 71.98 0.59 -4.52 16
2 C 0.23 6.61 0.84 2.86 0.00 6.61 16
3 N -0.71 -21.37 4.38 -429.45 -1.88 -23.25 16
4 C 0.56 23.23 4.88 86.69 0.42 23.65 16
5 O -0.53 -27.99 11.25 16.88 0.19 -27.80 16
6 C -0.24 -9.94 5.89 -19.99 -0.12 -10.05 16
7 C -0.03 -0.92 9.53 22.52 0.21 -0.70 16
8 C -0.20 -5.19 10.02 22.25 0.22 -4.97 16
9 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16
10 C -0.26 -10.71 9.16 22.36 0.20 -10.51 16
11 C 0.15 7.52 6.66 22.91 0.15 7.67 16
12 O -0.18 -11.04 7.84 0.91 0.01 -11.03 16
13 C -0.43 -24.99 9.49 67.93 0.64 -24.35 16
14 H 0.10 5.44 5.21 -2.91 -0.02 5.43 16
15 C -0.02 -0.99 5.49 84.85 0.47 -0.53 16
16 N -0.90 -57.11 13.67 21.62 0.30 -56.81 16
17 Si 1.02 43.46 29.55 68.60 2.03 45.48 16
18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16
19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16
20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
21 C 0.50 11.54 6.61 71.24 0.47 12.01 16
22 O -0.51 -13.75 16.65 21.98 0.37 -13.38 16
23 O -0.50 -7.44 12.66 -51.42 -0.65 -8.09 16
24 C -0.16 -4.96 4.36 -10.79 -0.05 -5.01 16
25 C -0.17 -5.99 8.44 30.62 0.26 -5.73 16
26 C -0.14 -3.91 9.39 30.62 0.29 -3.62 16
27 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
29 H 0.07 3.01 5.77 -2.39 -0.01 2.99 16
30 H 0.41 9.46 6.00 -92.71 -0.56 8.91 16
31 H 0.16 3.05 6.40 -2.91 -0.02 3.04 16
32 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16
33 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16
34 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16
35 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
36 H 0.43 2.06 9.10 -74.06 -0.67 1.38 16
37 H 0.11 3.60 8.07 -2.39 -0.02 3.58 16
38 H 0.08 3.25 5.10 -2.39 -0.01 3.24 16
39 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16
40 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16
41 H 0.10 2.39 7.99 -2.39 -0.02 2.37 16
Total: -1.00 -82.92 342.64 4.23 -78.68
By element:
Atomic # 1 Polarization: 37.38 SS G_CDS: -0.12 Total: 37.26 kcal
Atomic # 6 Polarization: -25.05 SS G_CDS: 4.00 Total: -21.05 kcal
Atomic # 7 Polarization: -78.48 SS G_CDS: -1.59 Total: -80.06 kcal
Atomic # 8 Polarization: -60.22 SS G_CDS: -0.09 Total: -60.31 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal
Total: -82.92 4.23 -78.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736658271.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.395 kcal
(2) G-P(sol) polarization free energy of solvation -82.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds