Wall clock time and date at job start Tue Mar 31 2020 14:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21226 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.47411 * 120.00038 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.01866 * 359.71876 * 5 3 2 7 7 C 1.37773 * 119.97176 * 179.81441 * 6 5 3 8 8 C 1.39613 * 120.02315 * 0.44719 * 7 6 5 9 9 C 1.47968 * 119.97590 * 179.76842 * 8 7 6 10 10 O 1.21429 * 119.99944 * 180.02562 * 9 8 7 11 11 O 1.34689 * 119.99896 * 0.02562 * 9 8 7 12 12 C 1.45202 * 116.99766 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46636 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00607 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99477 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99920 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47193 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00054 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47149 * 60.00134 * 21 19 17 23 23 H 1.48508 * 109.47075 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47133 * 299.99947 * 21 19 17 25 25 C 1.39601 * 120.04680 * 359.78542 * 8 7 6 26 26 C 1.37772 * 120.02517 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 32 32 H 1.07994 * 120.01311 * 0.02567 * 6 5 3 33 33 H 1.08003 * 119.98770 * 180.18935 * 7 6 5 34 34 H 1.08998 * 109.46492 * 299.99258 * 12 11 9 35 35 H 1.08995 * 109.47445 * 60.00085 * 12 11 9 36 36 H 0.97002 * 120.00155 * 359.97438 * 15 13 12 37 37 H 1.09005 * 109.46660 * 299.99590 * 16 15 13 38 38 H 1.09000 * 109.47513 * 59.99388 * 16 15 13 39 39 H 0.96995 * 120.00017 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99033 * 179.97438 * 25 8 7 41 41 H 1.08002 * 120.01524 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4816 1.6903 -0.0006 6 6 4.3905 0.6280 0.0048 7 6 5.7448 0.8809 0.0004 8 6 6.2096 2.1974 0.0000 9 6 7.6643 2.4679 0.0005 10 8 8.0691 3.6127 0.0006 11 8 8.5396 1.4441 0.0007 12 6 9.9513 1.7839 0.0018 13 6 10.7720 0.5200 0.0013 14 8 10.2215 -0.5607 0.0007 15 7 12.1180 0.5906 0.0016 16 6 12.9160 -0.6380 0.0006 17 6 14.3811 -0.2855 0.0005 18 1 14.6873 0.7502 0.0007 19 6 15.3307 -1.2851 0.0001 20 7 14.9579 -2.5463 -0.0006 21 14 17.1469 -0.8480 -0.0007 22 1 17.4649 -0.0516 1.2115 23 1 17.9557 -2.0935 -0.0016 24 1 17.4638 -0.0517 -1.2134 25 6 5.3028 3.2588 -0.0005 26 6 3.9481 3.0082 0.0000 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 4.0311 -0.3904 0.0090 33 1 6.4472 0.0605 0.0015 34 1 10.1848 2.3686 -0.8880 35 1 10.1838 2.3682 0.8920 36 1 12.5584 1.4549 0.0017 37 1 12.6828 -1.2234 0.8901 38 1 12.6830 -1.2219 -0.8899 39 1 15.6260 -3.2495 -0.0005 40 1 5.6633 4.2769 -0.0004 41 1 3.2467 3.8295 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761507708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:53 Heat of formation + Delta-G solvation = -141.287918 kcal Electronic energy + Delta-G solvation = -24563.463201 eV Core-core repulsion = 20601.439109 eV Total energy + Delta-G solvation = -3962.024092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97414 -40.28259 -38.93406 -38.32222 -36.45949 -34.30311 -33.54955 -32.46302 -32.10079 -31.45864 -29.29790 -27.02762 -26.23010 -24.20696 -22.80538 -22.66005 -21.50312 -20.02865 -19.99474 -18.52100 -17.60608 -17.39639 -16.73066 -16.62949 -15.95799 -15.94056 -15.60213 -15.26756 -14.97757 -14.74231 -14.60472 -14.33800 -14.00196 -13.81458 -13.43530 -13.23913 -12.93228 -12.70155 -12.68913 -12.51817 -12.22684 -12.02805 -11.82856 -11.63846 -11.55146 -11.06749 -10.94288 -10.86486 -10.80147 -10.37793 -10.19026 -9.55699 -9.50805 -9.49409 -9.25256 -8.81526 -8.04162 -6.22768 -4.30489 -0.20622 0.88148 1.57649 2.22360 2.40171 3.10619 3.22125 3.27211 3.28469 3.36041 3.42667 3.85645 4.24845 4.28824 4.41670 4.46015 4.52030 4.63394 4.72747 4.80559 4.90208 5.04023 5.13021 5.15407 5.16229 5.25920 5.27187 5.37183 5.45822 5.53400 5.69974 5.74013 5.80486 5.85667 6.15763 6.27349 7.01215 7.17347 7.24481 7.41260 7.47131 7.57854 7.88233 8.44330 8.66227 8.90472 9.35996 10.87255 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.001849 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.700372 B =15143.224930 C =16023.873789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.172 4.172 3 C 0.395 3.605 4 O -0.447 6.447 5 C -0.142 4.142 6 C -0.086 4.086 7 C -0.071 4.071 8 C -0.090 4.090 9 C 0.505 3.495 10 O -0.502 6.502 11 O -0.322 6.322 12 C 0.049 3.951 13 C 0.500 3.500 14 O -0.535 6.535 15 N -0.705 5.705 16 C 0.251 3.749 17 C -0.547 4.547 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.068 4.068 26 C -0.076 4.076 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.145 0.855 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.519 8.075 0.013 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.272 3.728 4 O -0.321 6.321 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.089 4.089 8 C -0.091 4.091 9 C 0.349 3.651 10 O -0.391 6.391 11 O -0.237 6.237 12 C -0.028 4.028 13 C 0.283 3.717 14 O -0.412 6.412 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.585 4.585 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.086 4.086 26 C -0.095 4.095 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.080 7.874 0.011 26.287 hybrid contribution 1.591 0.654 -0.001 1.720 sum -23.489 8.527 0.010 24.989 Atomic orbital electron populations 1.21606 0.93433 1.02075 1.03109 1.22021 0.98555 0.95273 1.05071 1.22670 0.87523 0.91561 0.71065 1.90523 1.58223 1.47839 1.35538 1.20818 0.95324 0.94516 1.03595 1.21475 0.92412 0.99198 0.97323 1.21654 0.96215 0.96386 0.94601 1.19369 0.89385 0.95032 1.05337 1.21249 0.87579 0.83196 0.73107 1.90836 1.80165 1.22550 1.45565 1.86583 1.17189 1.36608 1.83324 1.22929 0.77344 0.97714 1.04833 1.19847 0.83566 0.89472 0.78811 1.90703 1.71397 1.29428 1.49676 1.46372 1.04411 1.12487 1.72292 1.19182 0.88825 0.80806 0.98054 1.21171 0.90177 0.93446 1.53742 0.91796 1.24949 0.99702 0.94731 0.94553 1.69960 1.34578 0.99101 1.48527 0.86441 0.83699 0.77842 0.78735 1.20026 1.21028 1.20030 1.21270 0.92027 0.99428 0.95838 1.21355 0.95164 0.96449 0.96486 0.92082 0.91790 0.92077 0.87917 0.87913 0.83931 0.82924 0.88277 0.88267 0.77379 0.95212 0.95219 0.92291 0.83700 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.17 -0.82 5.03 -27.88 -0.14 -0.96 16 3 C 0.39 3.06 7.12 -30.58 -0.22 2.84 16 4 O -0.45 -4.77 15.96 5.60 0.09 -4.68 16 5 C -0.14 -1.13 5.87 -104.99 -0.62 -1.74 16 6 C -0.09 -0.61 9.46 -39.17 -0.37 -0.98 16 7 C -0.07 -0.65 9.60 -39.24 -0.38 -1.03 16 8 C -0.09 -0.97 5.88 -104.89 -0.62 -1.59 16 9 C 0.50 6.71 7.90 34.72 0.27 6.98 16 10 O -0.50 -7.40 16.12 -19.21 -0.31 -7.71 16 11 O -0.32 -4.79 8.99 -47.14 -0.42 -5.21 16 12 C 0.05 0.71 5.95 36.01 0.21 0.92 16 13 C 0.50 9.58 7.91 -10.98 -0.09 9.50 16 14 O -0.53 -12.46 16.50 -14.10 -0.23 -12.70 16 15 N -0.71 -14.09 5.55 -61.47 -0.34 -14.43 16 16 C 0.25 6.42 5.43 -5.20 -0.03 6.39 16 17 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.44 13.29 55.43 0.74 -24.70 16 21 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.07 -0.63 9.58 -39.24 -0.38 -1.01 16 26 C -0.08 -0.65 9.58 -39.17 -0.38 -1.02 16 27 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.10 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.14 0.59 7.03 -52.49 -0.37 0.22 16 33 H 0.15 1.45 7.60 -52.48 -0.40 1.05 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.15 1.25 7.64 -52.49 -0.40 0.85 16 41 H 0.14 1.09 7.64 -52.49 -0.40 0.69 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -33.94 367.70 -7.99 -41.93 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.24 Total: 1.79 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.79 Total: 4.81 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.40 Total: -39.13 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.88 Total: -30.30 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.94 -7.99 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761507708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.363 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds