Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46900 * 2 1 4 4 N 1.46898 * 109.46679 * 119.99920 * 2 1 3 5 5 C 1.46901 * 110.99954 * 163.34262 * 4 2 1 6 6 C 1.50702 * 109.46916 * 288.22573 * 5 4 2 7 7 H 1.07998 * 120.00615 * 4.67964 * 6 5 4 8 8 C 1.37878 * 120.00000 * 184.68069 * 6 5 4 9 9 N 1.31522 * 119.99881 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00469 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46577 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47338 * 119.99796 * 10 8 6 13 13 H 1.48498 * 109.47273 * 240.00071 * 10 8 6 14 14 C 1.46894 * 111.00191 * 287.29558 * 4 2 1 15 15 C 1.50698 * 109.47102 * 77.57250 * 14 4 2 16 16 C 1.34507 * 125.79394 * 68.55995 * 15 14 4 17 17 C 1.41386 * 106.84395 * 180.02562 * 16 15 14 18 18 C 1.34509 * 106.83651 * 0.22665 * 17 16 15 19 19 C 1.50708 * 125.78650 * 179.77370 * 18 17 16 20 20 S 1.81396 * 109.47368 * 89.99992 * 19 18 17 21 21 C 1.81395 * 103.00068 * 179.97438 * 20 19 18 22 22 F 1.39910 * 109.47178 * 299.99886 * 21 20 19 23 23 F 1.39899 * 109.47236 * 60.00066 * 21 20 19 24 24 O 1.34302 * 108.42454 * 359.63230 * 18 17 16 25 25 H 1.08995 * 109.47257 * 309.51858 * 1 2 3 26 26 H 1.09005 * 109.46803 * 69.51591 * 1 2 3 27 27 H 1.09000 * 109.47501 * 189.51329 * 1 2 3 28 28 H 1.08994 * 109.46920 * 239.99707 * 2 1 3 29 29 H 1.09001 * 109.46982 * 171.83979 * 3 2 1 30 30 H 1.08993 * 109.47441 * 291.83658 * 3 2 1 31 31 H 1.09000 * 109.47294 * 51.84656 * 3 2 1 32 32 H 1.09004 * 109.47281 * 48.21866 * 5 4 2 33 33 H 1.08998 * 109.47412 * 168.22163 * 5 4 2 34 34 H 0.97004 * 119.99915 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47525 * 317.56852 * 14 4 2 36 36 H 1.09001 * 109.47062 * 197.57087 * 14 4 2 37 37 H 1.08000 * 126.57813 * 359.97438 * 16 15 14 38 38 H 1.08002 * 126.57944 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.46825 * 210.00663 * 19 18 17 40 40 H 1.09003 * 109.47050 * 329.99878 * 19 18 17 41 41 H 1.08997 * 109.47294 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4338 -1.0622 1.0535 6 6 3.5582 -2.1913 0.0632 7 1 2.6856 -2.5435 -0.4667 8 6 4.7862 -2.7748 -0.1663 9 7 5.8490 -2.3456 0.4786 10 14 4.9404 -4.1749 -1.3933 11 1 3.6080 -4.4680 -1.9797 12 1 5.8822 -3.7853 -2.4732 13 1 5.4533 -5.3848 -0.7018 14 6 1.8106 0.1253 2.4017 15 6 0.3643 0.0468 2.8175 16 6 -0.2544 -1.0409 3.3109 17 6 -1.5954 -0.6703 3.5630 18 6 -1.7170 0.6202 3.2040 19 6 -2.9759 1.4442 3.2908 20 16 -3.0568 2.2560 4.9110 21 6 -4.6126 3.1846 4.8250 22 9 -4.5522 4.0990 3.7678 23 9 -5.6740 2.2978 4.6144 24 8 -0.5257 1.0508 2.7578 25 1 -0.3633 0.6539 0.7927 26 1 -0.3633 0.3597 -0.9627 27 1 -0.3634 -1.0135 0.1698 28 1 1.8933 -0.5139 -0.8899 29 1 3.1202 1.4460 0.1459 30 1 1.8007 1.9125 -0.9538 31 1 1.5625 1.9967 0.8081 32 1 3.9994 -0.2016 0.6961 33 1 3.8277 -1.3804 2.0188 34 1 6.7129 -2.7564 0.3174 35 1 2.0709 1.1616 2.1860 36 1 2.4415 -0.2473 3.2087 37 1 0.1879 -2.0113 3.4809 38 1 -2.3737 -1.3033 3.9630 39 1 -2.9702 2.2001 2.5054 40 1 -3.8435 0.7965 3.1652 41 1 -4.7676 3.7214 5.7608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768762125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -70.205781 kcal Electronic energy + Delta-G solvation = -24619.018230 eV Core-core repulsion = 20684.432927 eV Total energy + Delta-G solvation = -3934.585303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.58684 -47.67279 -42.52966 -37.82744 -33.16258 -32.87847 -32.37805 -30.85300 -28.78836 -27.36647 -26.74251 -25.99504 -23.84561 -22.11804 -21.60953 -20.25236 -18.97760 -18.73409 -18.11395 -17.87013 -16.64080 -16.38178 -16.04436 -15.60707 -15.14198 -14.72939 -14.72435 -14.35427 -14.09048 -14.01383 -13.94923 -13.68795 -13.11657 -12.97041 -12.63769 -12.45801 -12.34758 -12.12026 -12.04721 -11.87951 -11.44475 -11.12455 -10.98802 -10.73617 -10.70904 -10.58777 -10.53836 -10.05970 -9.83987 -9.64085 -9.28988 -8.62718 -8.47006 -8.08543 -7.33417 -6.05822 -4.06619 0.31238 1.29462 2.13493 2.87937 2.91225 3.29512 3.33200 3.37375 3.42315 3.93446 4.00031 4.37261 4.41978 4.61660 4.92009 5.01239 5.19521 5.24677 5.30718 5.53391 5.62479 5.84776 5.90211 5.93507 6.00035 6.08315 6.17785 6.21910 6.29567 6.36086 6.49027 6.73011 6.78522 6.82615 7.18051 7.30540 7.37405 7.76747 8.02864 8.14441 8.46627 9.00794 9.57456 11.04814 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.002554 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.242979 B =10958.552618 C =11116.098849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 C -0.182 4.182 4 N -0.522 5.522 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.115 3.885 15 C 0.044 3.956 16 C -0.200 4.200 17 C -0.163 4.163 18 C -0.039 4.039 19 C 0.004 3.996 20 S -0.222 6.222 21 C 0.281 3.719 22 F -0.187 7.187 23 F -0.187 7.187 24 O -0.171 6.171 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.051 0.949 32 H -0.004 1.004 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.204 10.540 8.381 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.241 4.241 4 N -0.246 5.246 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.013 4.013 15 C -0.008 4.008 16 C -0.220 4.220 17 C -0.185 4.185 18 C -0.090 4.090 19 C -0.142 4.142 20 S 0.004 5.996 21 C 0.119 3.881 22 F -0.168 7.168 23 F -0.169 7.169 24 O -0.068 6.068 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.591 10.378 9.175 23.185 hybrid contribution -0.302 -0.150 -1.710 1.743 sum -18.893 10.227 7.465 22.744 Atomic orbital electron populations 1.22036 0.96037 1.02034 1.00467 1.21616 0.94168 0.91856 0.95164 1.22442 1.01868 0.98754 1.01045 1.62271 1.23717 1.39132 0.99502 1.19817 0.80205 0.95295 0.97909 1.21156 0.93892 1.16633 1.22481 0.91799 1.24972 0.95773 0.97346 0.96494 1.69962 0.99396 1.42250 1.42246 0.86454 0.78088 0.82022 0.80949 1.19655 1.21150 1.21029 1.20699 0.85809 0.98678 0.96094 1.22700 0.92377 0.85825 0.99891 1.21538 0.93483 1.00283 1.06667 1.21606 0.98127 0.94673 1.04110 1.20774 0.85782 0.93959 1.08478 1.21609 0.95873 1.01229 0.95531 1.88247 1.26165 1.60101 1.25107 1.24230 0.87356 0.84292 0.92265 1.93117 1.96308 1.67209 1.60213 1.93107 1.58687 1.69020 1.96084 1.83974 1.17614 1.39315 1.65944 0.92648 0.93657 0.92264 0.88987 0.92094 0.92959 0.93031 0.98623 0.94801 0.92960 0.92688 0.88364 0.82975 0.83549 0.87527 0.86448 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.37 37.16 0.31 -2.15 16 2 C 0.08 1.52 2.77 -67.71 -0.19 1.33 16 3 C -0.18 -3.09 8.12 37.15 0.30 -2.79 16 4 N -0.52 -10.65 4.35 -229.53 -1.00 -11.65 16 5 C 0.19 4.72 4.64 -4.97 -0.02 4.70 16 6 C -0.50 -13.64 8.44 -34.44 -0.29 -13.93 16 7 H 0.06 1.74 7.49 -52.49 -0.39 1.35 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.12 2.02 5.25 -4.98 -0.03 2.00 16 15 C 0.04 0.72 4.65 -35.63 -0.17 0.55 16 16 C -0.20 -3.08 10.81 -39.70 -0.43 -3.51 16 17 C -0.16 -2.15 10.81 -39.70 -0.43 -2.58 16 18 C -0.04 -0.51 6.58 -35.62 -0.23 -0.74 16 19 C 0.00 0.04 6.44 36.01 0.23 0.28 16 20 S -0.22 -2.15 21.96 -107.50 -2.36 -4.51 16 21 C 0.28 2.01 5.91 101.05 0.60 2.61 16 22 F -0.19 -1.65 17.36 2.25 0.04 -1.61 16 23 F -0.19 -1.56 17.36 2.25 0.04 -1.53 16 24 O -0.17 -2.64 8.77 5.70 0.05 -2.59 16 25 H 0.05 0.90 4.54 -51.93 -0.24 0.66 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.93 6.95 -51.93 -0.36 1.57 16 29 H 0.06 1.12 6.65 -51.93 -0.35 0.77 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.82 6.41 -51.93 -0.33 0.49 16 32 H 0.00 -0.10 6.57 -51.93 -0.34 -0.44 16 33 H 0.03 0.89 7.67 -51.93 -0.40 0.49 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 0.93 5.34 -51.93 -0.28 0.65 16 36 H 0.10 1.69 7.61 -51.93 -0.40 1.30 16 37 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 40 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 41 H 0.15 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -29.49 354.74 -8.21 -37.70 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.60 Total: 0.63 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.44 Total: -12.80 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.26 Total: -36.93 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: 0.05 Total: -2.59 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.36 Total: -4.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.49 -8.21 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768762125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.509 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds