Wall clock time and date at job start Tue Mar 31 2020 13:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46900 * 2 1 4 4 N 1.46898 * 109.46679 * 119.99920 * 2 1 3 5 5 C 1.46901 * 110.99954 * 163.34262 * 4 2 1 6 6 C 1.50702 * 109.46916 * 288.22573 * 5 4 2 7 7 H 1.07998 * 120.00615 * 4.67964 * 6 5 4 8 8 C 1.37878 * 120.00000 * 184.68069 * 6 5 4 9 9 N 1.31522 * 119.99881 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00469 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46577 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47338 * 119.99796 * 10 8 6 13 13 H 1.48498 * 109.47273 * 240.00071 * 10 8 6 14 14 C 1.46894 * 111.00191 * 287.29558 * 4 2 1 15 15 C 1.50698 * 109.47102 * 77.57250 * 14 4 2 16 16 C 1.34507 * 125.79394 * 68.55995 * 15 14 4 17 17 C 1.41386 * 106.84395 * 180.02562 * 16 15 14 18 18 C 1.34509 * 106.83651 * 0.22665 * 17 16 15 19 19 C 1.50708 * 125.78650 * 179.77370 * 18 17 16 20 20 S 1.81396 * 109.47368 * 89.99992 * 19 18 17 21 21 C 1.81395 * 103.00068 * 179.97438 * 20 19 18 22 22 F 1.39910 * 109.47178 * 299.99886 * 21 20 19 23 23 F 1.39899 * 109.47236 * 60.00066 * 21 20 19 24 24 O 1.34302 * 108.42454 * 359.63230 * 18 17 16 25 25 H 1.08995 * 109.47257 * 309.51858 * 1 2 3 26 26 H 1.09005 * 109.46803 * 69.51591 * 1 2 3 27 27 H 1.09000 * 109.47501 * 189.51329 * 1 2 3 28 28 H 1.08994 * 109.46920 * 239.99707 * 2 1 3 29 29 H 1.09001 * 109.46982 * 171.83979 * 3 2 1 30 30 H 1.08993 * 109.47441 * 291.83658 * 3 2 1 31 31 H 1.09000 * 109.47294 * 51.84656 * 3 2 1 32 32 H 1.09004 * 109.47281 * 48.21866 * 5 4 2 33 33 H 1.08998 * 109.47412 * 168.22163 * 5 4 2 34 34 H 0.97004 * 119.99915 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47525 * 317.56852 * 14 4 2 36 36 H 1.09001 * 109.47062 * 197.57087 * 14 4 2 37 37 H 1.08000 * 126.57813 * 359.97438 * 16 15 14 38 38 H 1.08002 * 126.57944 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.46825 * 210.00663 * 19 18 17 40 40 H 1.09003 * 109.47050 * 329.99878 * 19 18 17 41 41 H 1.08997 * 109.47294 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4338 -1.0622 1.0535 6 6 3.5582 -2.1913 0.0632 7 1 2.6856 -2.5435 -0.4667 8 6 4.7862 -2.7748 -0.1663 9 7 5.8490 -2.3456 0.4786 10 14 4.9404 -4.1749 -1.3933 11 1 3.6080 -4.4680 -1.9797 12 1 5.8822 -3.7853 -2.4732 13 1 5.4533 -5.3848 -0.7018 14 6 1.8106 0.1253 2.4017 15 6 0.3643 0.0468 2.8175 16 6 -0.2544 -1.0409 3.3109 17 6 -1.5954 -0.6703 3.5630 18 6 -1.7170 0.6202 3.2040 19 6 -2.9759 1.4442 3.2908 20 16 -3.0568 2.2560 4.9110 21 6 -4.6126 3.1846 4.8250 22 9 -4.5522 4.0990 3.7678 23 9 -5.6740 2.2978 4.6144 24 8 -0.5257 1.0508 2.7578 25 1 -0.3633 0.6539 0.7927 26 1 -0.3633 0.3597 -0.9627 27 1 -0.3634 -1.0135 0.1698 28 1 1.8933 -0.5139 -0.8899 29 1 3.1202 1.4460 0.1459 30 1 1.8007 1.9125 -0.9538 31 1 1.5625 1.9967 0.8081 32 1 3.9994 -0.2016 0.6961 33 1 3.8277 -1.3804 2.0188 34 1 6.7129 -2.7564 0.3174 35 1 2.0709 1.1616 2.1860 36 1 2.4415 -0.2473 3.2087 37 1 0.1879 -2.0113 3.4809 38 1 -2.3737 -1.3033 3.9630 39 1 -2.9702 2.2001 2.5054 40 1 -3.8435 0.7965 3.1652 41 1 -4.7676 3.7214 5.7608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768762125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:08 Heat of formation + Delta-G solvation = -86.196346 kcal Electronic energy + Delta-G solvation = -24619.711633 eV Core-core repulsion = 20684.432927 eV Total energy + Delta-G solvation = -3935.278706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.20010 -48.29231 -43.67882 -39.40412 -34.94508 -34.21801 -33.55501 -32.38542 -30.25448 -28.16497 -27.99040 -27.60155 -25.20331 -23.98811 -22.75290 -21.44995 -20.44907 -19.44638 -18.69192 -18.47517 -18.40590 -17.66747 -17.33671 -16.98103 -16.48522 -16.19202 -15.74535 -15.58526 -15.32932 -14.84598 -14.75293 -14.61975 -14.46183 -14.34942 -14.06738 -13.75296 -13.64876 -13.44593 -13.20135 -13.19590 -12.81895 -12.70499 -12.62888 -12.51735 -12.35571 -12.05542 -11.74925 -11.52564 -11.36304 -11.30288 -10.77225 -10.59423 -9.36559 -9.23870 -9.01051 -8.18223 -6.26747 -0.38565 0.48504 1.08626 1.41069 1.42488 1.55199 1.77506 1.79785 2.41975 2.82529 3.13457 3.28415 3.41835 3.45468 3.53258 3.77480 3.96527 4.08730 4.12460 4.21980 4.29271 4.44421 4.49975 4.52881 4.73781 4.79438 4.86144 4.93717 5.01036 5.07947 5.10847 5.19859 5.21799 5.41657 5.50097 5.58953 5.68310 6.06203 6.19046 6.39018 6.59297 6.88193 7.41953 8.92276 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.002554 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.242979 B =10958.552618 C =11116.098849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 C -0.173 4.173 4 N -0.528 5.528 5 C 0.208 3.792 6 C -0.515 4.515 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.119 3.881 15 C 0.023 3.977 16 C -0.204 4.204 17 C -0.168 4.168 18 C -0.030 4.030 19 C 0.005 3.995 20 S -0.250 6.250 21 C 0.293 3.707 22 F -0.195 7.195 23 F -0.192 7.192 24 O -0.180 6.180 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.063 0.937 32 H -0.025 1.025 33 H 0.010 0.990 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 11.071 8.341 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 C -0.231 4.231 4 N -0.252 5.252 5 C 0.083 3.917 6 C -0.554 4.554 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.008 4.008 15 C -0.028 4.028 16 C -0.224 4.224 17 C -0.190 4.190 18 C -0.080 4.080 19 C -0.142 4.142 20 S -0.025 6.025 21 C 0.131 3.869 22 F -0.177 7.177 23 F -0.174 7.174 24 O -0.078 6.078 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.081 0.919 32 H -0.007 1.007 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.119 10.910 9.132 25.465 hybrid contribution 0.363 -0.232 -1.633 1.689 sum -20.756 10.678 7.499 24.517 Atomic orbital electron populations 1.21903 0.93859 1.01561 1.01864 1.21643 0.95762 0.92400 0.93330 1.22328 1.00396 0.97766 1.02626 1.62169 1.20770 1.40941 1.01314 1.19431 0.82540 0.93905 0.95848 1.21432 0.93837 1.17239 1.22842 0.92310 1.25816 0.95429 0.99868 0.98297 1.70076 0.99920 1.43656 1.43733 0.85410 0.78247 0.78811 0.78612 1.18983 1.20529 1.20522 1.20564 0.87346 0.98298 0.94638 1.22227 0.91933 0.86597 1.02053 1.21664 0.94731 0.99805 1.06172 1.21831 0.97647 0.95131 1.04401 1.21352 0.85699 0.94401 1.06581 1.21718 0.94885 1.01546 0.96036 1.88312 1.28733 1.60863 1.24564 1.24521 0.85405 0.83620 0.93400 1.93103 1.96217 1.67388 1.60981 1.93100 1.58701 1.69370 1.96191 1.83943 1.18298 1.39167 1.66394 0.91995 0.91570 0.93478 0.91633 0.94218 0.90920 0.91863 1.00747 0.97228 0.92754 0.92181 0.88926 0.83577 0.81057 0.86945 0.84350 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.37 71.98 0.60 -3.72 16 2 C 0.08 2.93 2.77 44.91 0.12 3.05 16 3 C -0.17 -5.81 8.12 71.98 0.58 -5.22 16 4 N -0.53 -22.21 4.35 -880.09 -3.83 -26.04 16 5 C 0.21 10.73 4.64 85.56 0.40 11.13 16 6 C -0.52 -28.72 8.44 25.60 0.22 -28.51 16 7 H 0.06 3.27 7.49 -2.91 -0.02 3.25 16 8 C 0.00 0.21 5.46 84.65 0.46 0.68 16 9 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 10 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 C 0.12 4.30 5.25 85.56 0.45 4.75 16 15 C 0.02 0.76 4.65 24.83 0.12 0.87 16 16 C -0.20 -6.21 10.81 22.19 0.24 -5.97 16 17 C -0.17 -4.17 10.81 22.19 0.24 -3.93 16 18 C -0.03 -0.72 6.58 24.83 0.16 -0.56 16 19 C 0.00 0.09 6.44 71.24 0.46 0.54 16 20 S -0.25 -4.24 21.96 -56.49 -1.24 -5.48 16 21 C 0.29 3.28 5.91 113.37 0.67 3.95 16 22 F -0.20 -2.92 17.36 44.97 0.78 -2.14 16 23 F -0.19 -2.63 17.36 44.97 0.78 -1.85 16 24 O -0.18 -5.35 8.77 -2.50 -0.02 -5.37 16 25 H 0.06 1.92 4.54 -2.39 -0.01 1.91 16 26 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 2.82 6.95 -2.39 -0.02 2.80 16 29 H 0.04 1.49 6.65 -2.39 -0.02 1.47 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.97 6.41 -2.39 -0.02 1.95 16 32 H -0.03 -1.38 6.57 -2.38 -0.02 -1.39 16 33 H 0.01 0.53 7.67 -2.39 -0.02 0.52 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.06 2.08 5.34 -2.39 -0.01 2.06 16 36 H 0.09 3.37 7.61 -2.39 -0.02 3.35 16 37 H 0.15 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.19 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -64.42 354.74 4.54 -59.87 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.04 Total: 12.81 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.72 Total: -22.94 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -3.55 Total: -81.07 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.02 Total: -5.37 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 1.56 Total: -3.99 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -1.24 Total: -5.48 kcal Total: -64.42 4.54 -59.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768762125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.323 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds