Wall clock time and date at job start Tue Mar 31 2020 12:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35241 * 126.06972 * 2 1 4 4 C 1.40413 * 107.86900 * 179.90421 * 3 2 1 5 5 N 1.40182 * 125.97391 * 180.10582 * 4 3 2 6 6 C 1.34780 * 119.99893 * 0.28048 * 5 4 3 7 7 O 1.21585 * 120.00246 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99482 * 180.02562 * 6 5 4 9 9 C 1.40092 * 119.99658 * 175.32490 * 8 6 5 10 10 C 1.39311 * 120.45863 * 34.95638 * 9 8 6 11 11 C 1.38416 * 118.39521 * 179.97438 * 10 9 8 12 12 C 1.38580 * 119.20726 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.56951 * 179.97438 * 12 11 10 14 14 N 1.31999 * 120.85319 * 359.97438 * 12 11 10 15 15 C 1.31908 * 121.75657 * 359.77003 * 14 12 11 16 16 N 1.31213 * 108.04661 * 0.36135 * 4 3 2 17 17 N 1.34963 * 126.07179 * 180.30649 * 2 1 3 18 18 C 1.46503 * 125.97532 * 359.93278 * 17 2 1 19 19 C 1.50705 * 109.47150 * 89.99882 * 18 17 2 20 20 H 1.08000 * 119.99864 * 359.97438 * 19 18 17 21 21 C 1.37868 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00029 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47255 * 119.99861 * 23 21 19 26 26 H 1.48500 * 109.46809 * 239.99364 * 23 21 19 27 27 H 1.09002 * 109.47169 * 269.69074 * 1 2 3 28 28 H 1.09004 * 109.47288 * 149.68954 * 1 2 3 29 29 H 1.09002 * 109.47116 * 29.68937 * 1 2 3 30 30 H 1.08005 * 126.06817 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99523 * 180.27062 * 5 4 3 32 32 H 0.96996 * 120.00519 * 355.31933 * 8 6 5 33 33 H 1.08005 * 120.80240 * 359.96003 * 10 9 8 34 34 H 1.07995 * 120.40118 * 179.97438 * 11 10 9 35 35 H 1.08003 * 119.64395 * 180.24475 * 15 14 12 36 36 H 1.09000 * 109.47086 * 209.99612 * 18 17 2 37 37 H 1.08998 * 109.47243 * 329.99749 * 18 17 2 38 38 H 0.97009 * 120.00316 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0022 5 7 4.7737 1.4751 0.0051 6 6 4.6369 2.8159 0.0115 7 8 3.5276 3.3138 0.0145 8 7 5.7297 3.6047 0.0137 9 6 5.5897 4.9956 -0.0784 10 6 4.5091 5.6379 0.5219 11 6 4.4131 7.0137 0.4045 12 6 5.3872 7.7018 -0.3013 13 9 5.3005 9.0447 -0.4209 14 7 6.3986 7.0620 -0.8582 15 6 6.5280 5.7527 -0.7646 16 7 3.6336 -0.6575 -0.0043 17 7 2.3016 -1.0909 -0.0058 18 6 1.8500 -2.4845 -0.0119 19 6 1.6938 -2.9558 -1.4348 20 1 1.9090 -2.2842 -2.2528 21 6 1.2753 -4.2439 -1.6924 22 7 1.0128 -5.0616 -0.6963 23 14 1.0823 -4.8283 -3.4561 24 1 1.4379 -3.7253 -4.3847 25 1 1.9808 -5.9862 -3.6951 26 1 -0.3257 -5.2378 -3.6906 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3634 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1211 0.0004 31 1 5.6586 1.0778 0.0025 32 1 6.6130 3.2095 0.0792 33 1 3.7640 5.0759 1.0655 34 1 3.5885 7.5446 0.8568 35 1 7.3715 5.2646 -1.2303 36 1 2.5852 -3.1069 0.4983 37 1 0.8919 -2.5583 0.5025 38 1 0.7187 -5.9681 -0.8775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782793701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:45 Heat of formation + Delta-G solvation = 55.648444 kcal Electronic energy + Delta-G solvation = -25078.394266 eV Core-core repulsion = 21066.035173 eV Total energy + Delta-G solvation = -4012.359093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.23006 -41.37314 -40.55147 -39.46056 -35.61544 -34.98455 -33.47847 -32.69846 -31.57743 -30.95294 -29.74646 -26.73556 -26.42258 -24.49659 -24.15468 -22.96295 -21.75507 -20.23478 -19.80523 -18.58568 -18.26531 -17.67618 -17.14711 -16.74809 -16.31049 -16.04237 -15.72704 -15.27296 -14.90618 -14.76386 -14.41587 -14.23803 -14.11593 -13.57795 -13.43061 -13.18091 -13.05633 -12.53755 -12.41847 -12.30816 -11.76967 -11.49093 -11.27790 -11.10682 -10.90957 -10.55418 -10.44011 -10.27447 -10.24748 -9.95662 -9.74489 -9.60456 -8.69779 -8.66723 -8.04223 -7.54553 -6.30657 -4.38501 0.48647 0.77879 1.97269 2.41785 2.85938 3.16834 3.23582 3.24993 3.25245 3.30615 3.39078 3.64934 3.99752 4.20817 4.27073 4.42649 4.48972 4.85278 5.03185 5.11309 5.29380 5.54062 5.58851 5.66971 5.80952 5.88323 6.02286 6.04255 6.28370 6.37683 6.40522 6.50390 6.83482 6.90649 6.99722 7.23377 7.33304 7.61872 7.65260 7.83103 7.96955 8.21225 8.55094 8.69497 9.28350 10.76638 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002278 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.942226 B =12290.714021 C =12483.091756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.288 4.288 4 C 0.276 3.724 5 N -0.634 5.634 6 C 0.714 3.286 7 O -0.549 6.549 8 N -0.678 5.678 9 C 0.113 3.887 10 C -0.049 4.049 11 C -0.170 4.170 12 C 0.284 3.716 13 F -0.115 7.115 14 N -0.495 5.495 15 C 0.111 3.889 16 N -0.319 5.319 17 N -0.315 5.315 18 C 0.258 3.742 19 C -0.537 4.537 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.280 1.280 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.410 0.590 32 H 0.413 0.587 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 19.162 3.986 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.023 3.977 5 N -0.284 5.284 6 C 0.414 3.586 7 O -0.423 6.423 8 N -0.327 5.327 9 C 0.014 3.986 10 C -0.077 4.077 11 C -0.192 4.192 12 C 0.129 3.871 13 F -0.094 7.094 14 N -0.209 5.209 15 C -0.049 4.049 16 N -0.149 5.149 17 N -0.098 5.098 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.245 0.755 32 H 0.249 0.751 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.169 18.696 3.565 20.712 hybrid contribution -0.146 -0.463 -0.559 0.740 sum 8.023 18.234 3.006 20.146 Atomic orbital electron populations 1.20388 0.87836 1.03953 1.02596 1.21071 0.94982 0.87061 1.00681 1.21216 0.89563 0.99869 1.21294 1.18605 0.86254 0.89315 1.03512 1.41253 1.08134 1.03232 1.75733 1.15544 0.84238 0.80732 0.78108 1.90882 1.23204 1.73047 1.55167 1.42358 1.09358 1.03678 1.77319 1.18498 0.98312 0.82898 0.98844 1.21786 0.97550 0.92960 0.95431 1.21822 1.00392 0.94818 1.02131 1.18127 0.92732 0.78912 0.97305 1.91620 1.95463 1.28141 1.94152 1.66964 1.22807 1.10517 1.20576 1.22278 0.99459 0.87398 0.95733 1.77256 1.00143 1.08150 1.29364 1.49015 1.00781 1.07873 1.52106 1.19719 0.96028 0.71224 0.99004 1.21354 1.46818 0.98006 0.91340 0.91675 1.24929 0.94642 0.96052 0.98166 1.69926 1.44881 1.06985 1.31094 0.86304 0.77916 0.78809 0.83687 1.19565 1.20637 1.20609 0.91015 0.89853 0.90562 0.82199 0.75510 0.75056 0.81677 0.83023 0.81319 0.92952 0.92701 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.89 36.00 0.36 -1.10 16 2 C 0.09 1.87 6.92 -82.29 -0.57 1.30 16 3 C -0.29 -5.53 9.52 -39.83 -0.38 -5.91 16 4 C 0.28 5.19 8.11 -154.37 -1.25 3.94 16 5 N -0.63 -8.54 5.45 -15.51 -0.08 -8.62 16 6 C 0.71 8.90 8.39 -86.92 -0.73 8.17 16 7 O -0.55 -8.47 10.95 5.29 0.06 -8.42 16 8 N -0.68 -5.49 5.36 -14.11 -0.08 -5.57 16 9 C 0.11 1.00 6.32 -83.50 -0.53 0.48 16 10 C -0.05 -0.48 8.81 -39.12 -0.34 -0.82 16 11 C -0.17 -1.49 10.08 -39.39 -0.40 -1.89 16 12 C 0.28 2.93 8.41 -17.35 -0.15 2.79 16 13 F -0.11 -1.23 17.29 2.25 0.04 -1.19 16 14 N -0.49 -5.26 10.37 -13.45 -0.14 -5.40 16 15 C 0.11 0.92 11.12 -17.34 -0.19 0.73 16 16 N -0.32 -6.94 12.59 31.44 0.40 -6.54 16 17 N -0.32 -7.16 3.59 -58.33 -0.21 -7.36 16 18 C 0.26 6.39 5.81 -5.19 -0.03 6.36 16 19 C -0.54 -14.39 9.39 -34.44 -0.32 -14.72 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 23 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.16 2.96 5.91 -52.48 -0.31 2.65 16 31 H 0.41 4.13 8.84 -40.82 -0.36 3.77 16 32 H 0.41 1.79 8.84 -40.82 -0.36 1.43 16 33 H 0.17 1.73 6.32 -52.48 -0.33 1.40 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.35 7.65 -51.93 -0.40 0.95 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -32.69 339.89 -7.63 -40.32 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.82 Total: 4.79 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.63 Total: 0.97 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.62 Total: -57.27 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.69 -7.63 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782793701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.967 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds