Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35241 * 126.06972 * 2 1 4 4 C 1.40413 * 107.86900 * 179.90421 * 3 2 1 5 5 N 1.40182 * 125.97391 * 180.10582 * 4 3 2 6 6 C 1.34780 * 119.99893 * 0.28048 * 5 4 3 7 7 O 1.21585 * 120.00246 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99482 * 180.02562 * 6 5 4 9 9 C 1.40092 * 119.99658 * 175.32490 * 8 6 5 10 10 C 1.39311 * 120.45863 * 34.95638 * 9 8 6 11 11 C 1.38416 * 118.39521 * 179.97438 * 10 9 8 12 12 C 1.38580 * 119.20726 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.56951 * 179.97438 * 12 11 10 14 14 N 1.31999 * 120.85319 * 359.97438 * 12 11 10 15 15 C 1.31908 * 121.75657 * 359.77003 * 14 12 11 16 16 N 1.31213 * 108.04661 * 0.36135 * 4 3 2 17 17 N 1.34963 * 126.07179 * 180.30649 * 2 1 3 18 18 C 1.46503 * 125.97532 * 359.93278 * 17 2 1 19 19 C 1.50705 * 109.47150 * 89.99882 * 18 17 2 20 20 H 1.08000 * 119.99864 * 359.97438 * 19 18 17 21 21 C 1.37868 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00029 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47255 * 119.99861 * 23 21 19 26 26 H 1.48500 * 109.46809 * 239.99364 * 23 21 19 27 27 H 1.09002 * 109.47169 * 269.69074 * 1 2 3 28 28 H 1.09004 * 109.47288 * 149.68954 * 1 2 3 29 29 H 1.09002 * 109.47116 * 29.68937 * 1 2 3 30 30 H 1.08005 * 126.06817 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99523 * 180.27062 * 5 4 3 32 32 H 0.96996 * 120.00519 * 355.31933 * 8 6 5 33 33 H 1.08005 * 120.80240 * 359.96003 * 10 9 8 34 34 H 1.07995 * 120.40118 * 179.97438 * 11 10 9 35 35 H 1.08003 * 119.64395 * 180.24475 * 15 14 12 36 36 H 1.09000 * 109.47086 * 209.99612 * 18 17 2 37 37 H 1.08998 * 109.47243 * 329.99749 * 18 17 2 38 38 H 0.97009 * 120.00316 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0022 5 7 4.7737 1.4751 0.0051 6 6 4.6369 2.8159 0.0115 7 8 3.5276 3.3138 0.0145 8 7 5.7297 3.6047 0.0137 9 6 5.5897 4.9956 -0.0784 10 6 4.5091 5.6379 0.5219 11 6 4.4131 7.0137 0.4045 12 6 5.3872 7.7018 -0.3013 13 9 5.3005 9.0447 -0.4209 14 7 6.3986 7.0620 -0.8582 15 6 6.5280 5.7527 -0.7646 16 7 3.6336 -0.6575 -0.0043 17 7 2.3016 -1.0909 -0.0058 18 6 1.8500 -2.4845 -0.0119 19 6 1.6938 -2.9558 -1.4348 20 1 1.9090 -2.2842 -2.2528 21 6 1.2753 -4.2439 -1.6924 22 7 1.0128 -5.0616 -0.6963 23 14 1.0823 -4.8283 -3.4561 24 1 1.4379 -3.7253 -4.3847 25 1 1.9808 -5.9862 -3.6951 26 1 -0.3257 -5.2378 -3.6906 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3634 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1211 0.0004 31 1 5.6586 1.0778 0.0025 32 1 6.6130 3.2095 0.0792 33 1 3.7640 5.0759 1.0655 34 1 3.5885 7.5446 0.8568 35 1 7.3715 5.2646 -1.2303 36 1 2.5852 -3.1069 0.4983 37 1 0.8919 -2.5583 0.5025 38 1 0.7187 -5.9681 -0.8775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782793701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = 33.858734 kcal Electronic energy + Delta-G solvation = -25079.339138 eV Core-core repulsion = 21066.035173 eV Total energy + Delta-G solvation = -4013.303966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.01412 -42.48862 -41.76103 -40.43876 -36.69196 -36.10383 -35.33743 -33.50821 -32.98520 -32.60876 -30.62592 -28.52086 -27.86219 -25.46849 -25.12425 -24.45962 -22.83908 -21.48813 -21.15874 -19.63354 -19.04485 -18.80939 -18.60810 -17.97740 -17.49261 -17.10183 -16.84415 -16.78935 -16.17567 -15.91603 -15.67526 -15.49399 -15.00721 -14.67479 -14.43301 -14.28944 -14.17651 -13.86663 -13.79693 -13.64148 -13.54651 -13.15616 -12.82780 -12.69065 -12.28437 -12.18928 -11.95950 -11.62897 -11.37172 -11.30618 -10.97362 -10.73410 -10.62851 -9.62720 -9.41843 -9.06714 -8.32344 -6.49795 -0.24515 0.06161 0.90627 1.01578 1.37301 1.39435 1.51424 1.58487 1.96710 2.25639 2.34994 2.57124 2.58129 2.92624 2.97595 3.53690 3.73148 3.79345 3.86868 4.12522 4.17030 4.46490 4.53507 4.71820 4.79203 4.86332 4.88219 4.91262 4.95634 5.03133 5.07915 5.18467 5.27095 5.54570 5.61534 5.74342 5.82006 5.93908 6.26982 6.52620 6.57928 6.64520 7.06644 7.21346 7.21422 8.73535 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002278 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.942226 B =12290.714021 C =12483.091756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.294 4.294 4 C 0.290 3.710 5 N -0.625 5.625 6 C 0.716 3.284 7 O -0.577 6.577 8 N -0.653 5.653 9 C 0.107 3.893 10 C -0.059 4.059 11 C -0.163 4.163 12 C 0.268 3.732 13 F -0.121 7.121 14 N -0.517 5.517 15 C 0.123 3.877 16 N -0.356 5.356 17 N -0.343 5.343 18 C 0.275 3.725 19 C -0.551 4.551 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.268 1.268 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.170 0.830 31 H 0.426 0.574 32 H 0.434 0.566 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.204 0.796 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 20.182 3.279 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.325 4.325 4 C 0.035 3.965 5 N -0.277 5.277 6 C 0.416 3.584 7 O -0.453 6.453 8 N -0.303 5.303 9 C 0.009 3.991 10 C -0.087 4.087 11 C -0.184 4.184 12 C 0.115 3.885 13 F -0.100 7.100 14 N -0.231 5.231 15 C -0.037 4.037 16 N -0.186 5.186 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.589 4.589 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.193 1.193 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.188 0.812 31 H 0.264 0.736 32 H 0.274 0.726 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.220 0.780 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.795 19.754 2.870 21.813 hybrid contribution -0.252 -0.633 -0.292 0.741 sum 8.543 19.121 2.578 21.101 Atomic orbital electron populations 1.20501 0.85529 1.04336 1.04099 1.21743 0.96639 0.86480 0.99464 1.21414 0.89779 0.99955 1.21362 1.18869 0.87854 0.88876 1.00898 1.41189 1.07533 1.03294 1.75691 1.15626 0.84776 0.80364 0.77652 1.90862 1.24789 1.73402 1.56272 1.42022 1.09249 1.03082 1.75993 1.18588 0.98517 0.82876 0.99161 1.21811 0.97774 0.93333 0.95782 1.21944 1.00483 0.94536 1.01473 1.18338 0.93331 0.78836 0.98022 1.91599 1.95541 1.28629 1.94265 1.67004 1.23256 1.11548 1.21276 1.22742 0.99778 0.86560 0.94634 1.77173 1.00082 1.09757 1.31634 1.48773 1.01678 1.07511 1.54615 1.19239 0.94943 0.72486 0.97686 1.21466 1.47328 0.98302 0.91835 0.93240 1.25710 0.94032 0.95973 1.02105 1.70004 1.45192 1.07430 1.32986 0.85326 0.78421 0.78098 0.78740 1.19836 1.20027 1.19326 0.88879 0.91573 0.87944 0.81230 0.73573 0.72569 0.82533 0.81070 0.77990 0.95658 0.93032 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.74 9.89 71.23 0.70 -2.04 16 2 C 0.09 3.47 6.92 41.38 0.29 3.75 16 3 C -0.29 -11.08 9.52 22.11 0.21 -10.87 16 4 C 0.29 10.72 8.11 133.32 1.08 11.80 16 5 N -0.63 -15.84 5.45 -321.23 -1.75 -17.59 16 6 C 0.72 16.42 8.39 179.05 1.50 17.92 16 7 O -0.58 -16.95 10.95 -3.98 -0.04 -16.99 16 8 N -0.65 -8.82 5.36 -316.83 -1.70 -10.52 16 9 C 0.11 1.65 6.32 38.20 0.24 1.89 16 10 C -0.06 -1.05 8.81 22.57 0.20 -0.85 16 11 C -0.16 -2.63 10.08 22.39 0.23 -2.41 16 12 C 0.27 5.22 8.41 84.75 0.71 5.93 16 13 F -0.12 -2.50 17.29 44.97 0.78 -1.72 16 14 N -0.52 -10.05 10.37 -196.45 -2.04 -12.09 16 15 C 0.12 1.70 11.12 84.80 0.94 2.64 16 16 N -0.36 -15.69 12.59 -54.43 -0.69 -16.37 16 17 N -0.34 -15.90 3.59 -338.44 -1.22 -17.12 16 18 C 0.28 14.13 5.81 85.63 0.50 14.63 16 19 C -0.55 -30.20 9.39 25.60 0.24 -29.95 16 20 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 21 C 0.02 1.22 5.46 84.65 0.46 1.69 16 22 N -0.92 -50.93 13.29 21.44 0.28 -50.64 16 23 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.33 7.71 -2.39 -0.02 2.31 16 29 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.17 6.07 5.91 -2.91 -0.02 6.05 16 31 H 0.43 7.77 8.84 -92.71 -0.82 6.95 16 32 H 0.43 2.29 8.84 -92.71 -0.82 1.48 16 33 H 0.16 3.11 6.32 -2.91 -0.02 3.09 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 2.63 7.65 -2.39 -0.02 2.61 16 38 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -71.35 339.89 2.47 -68.88 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.49 Total: 15.67 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 7.31 Total: 14.14 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -7.10 Total: -124.34 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.04 Total: -16.99 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -71.35 2.47 -68.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782793701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.740 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds