Wall clock time and date at job start Tue Mar 31 2020 13:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99801 * 2 1 4 4 H 1.09006 * 109.46802 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47071 * 239.99908 * 3 2 1 6 6 C 1.50696 * 109.47166 * 119.99776 * 3 2 1 7 7 O 1.20828 * 119.99986 * 115.00490 * 6 3 2 8 8 O 1.34227 * 119.99970 * 294.99484 * 6 3 2 9 9 C 1.45201 * 117.00008 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47415 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99960 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00541 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99403 * 355.26722 * 12 10 9 14 14 C 1.50696 * 109.47363 * 90.00286 * 13 12 10 15 15 H 1.08006 * 119.99428 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00565 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00242 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99660 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47315 * 89.99757 * 18 16 14 20 20 H 1.48496 * 109.47056 * 209.99821 * 18 16 14 21 21 H 1.48499 * 109.47307 * 329.99596 * 18 16 14 22 22 C 1.39916 * 120.00293 * 175.26995 * 12 10 9 23 23 C 1.38877 * 120.07331 * 291.84743 * 22 12 10 24 24 C 1.38103 * 119.93016 * 179.74533 * 23 22 12 25 25 C 1.38285 * 120.07410 * 0.53173 * 24 23 22 26 26 C 1.38282 * 120.13995 * 359.74517 * 25 24 23 27 27 C 1.38119 * 120.07044 * 359.97438 * 26 25 24 28 28 H 1.08003 * 120.00444 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99586 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00444 * 179.97438 * 2 1 3 31 31 H 0.96705 * 114.00088 * 300.00038 * 5 3 2 32 32 H 1.08997 * 109.47474 * 300.00789 * 9 8 6 33 33 H 1.09003 * 109.46479 * 60.00488 * 9 8 6 34 34 H 1.09002 * 109.47200 * 210.00016 * 13 12 10 35 35 H 1.08998 * 109.47736 * 329.99850 * 13 12 10 36 36 H 0.96998 * 119.99873 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.03014 * 0.02738 * 23 22 12 38 38 H 1.08007 * 119.96348 * 180.27290 * 24 23 22 39 39 H 1.07995 * 119.93257 * 179.71777 * 25 24 23 40 40 H 1.07998 * 119.96789 * 179.97438 * 26 25 24 41 41 H 1.07993 * 120.03954 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 8 2.8850 1.3809 -1.1668 6 6 2.9298 1.3851 1.2305 7 8 4.1330 1.4045 1.1219 8 8 2.3647 1.4349 2.4470 9 6 3.2605 1.5102 3.5873 10 6 2.4526 1.5573 4.8585 11 8 1.2410 1.5295 4.8085 12 7 3.0763 1.6302 6.0511 13 6 4.5380 1.5592 6.1187 14 6 5.1136 2.9482 6.0167 15 1 4.4563 3.7987 5.9115 16 6 6.4793 3.1333 6.0576 17 7 6.9816 4.3454 5.9680 18 14 7.6161 1.6621 6.2388 19 1 7.9761 1.1461 4.8936 20 1 8.8487 2.0746 6.9570 21 1 6.9272 0.5962 7.0098 22 6 2.3277 1.7736 7.2245 23 6 1.6366 2.9531 7.4693 24 6 0.8944 3.0895 8.6259 25 6 0.8478 2.0574 9.5451 26 6 1.5394 0.8838 9.3071 27 6 2.2788 0.7389 8.1495 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.5405 0.6730 -1.2329 32 1 3.9069 0.6327 3.6002 33 1 3.8709 2.4101 3.5108 34 1 4.8365 1.1110 7.0664 35 1 4.9107 0.9500 5.2954 36 1 7.9424 4.4755 5.9964 37 1 1.6759 3.7610 6.7537 38 1 0.3532 4.0049 8.8148 39 1 0.2703 2.1682 10.4509 40 1 1.5013 0.0797 10.0270 41 1 2.8184 -0.1780 7.9640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814541615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:52 Heat of formation + Delta-G solvation = -106.006806 kcal Electronic energy + Delta-G solvation = -26504.446678 eV Core-core repulsion = 22543.952490 eV Total energy + Delta-G solvation = -3960.494188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72074 -39.93993 -38.18393 -37.40906 -36.08464 -35.26009 -33.62211 -32.68845 -30.62288 -30.45961 -28.77410 -27.77332 -26.81617 -22.97384 -22.56124 -22.00372 -21.43832 -20.67380 -19.21854 -18.32115 -17.37439 -17.23861 -16.93309 -16.52288 -16.28951 -16.03755 -15.59896 -15.21442 -14.89185 -14.34517 -14.21635 -13.90782 -13.64808 -13.31272 -13.11178 -12.92335 -12.68509 -12.56909 -12.38384 -12.32715 -12.03329 -11.86312 -11.48955 -11.20826 -11.17290 -10.86417 -10.83402 -10.56205 -10.39612 -10.30303 -9.77794 -9.76501 -9.44368 -8.82084 -8.75596 -8.61074 -7.85648 -6.30305 -4.34412 1.60760 1.73036 1.77176 2.18795 2.41464 2.94969 3.13208 3.18962 3.22084 3.58565 4.09560 4.12588 4.19104 4.40739 4.67599 4.74184 4.93015 4.99801 5.20710 5.21062 5.23726 5.33948 5.37980 5.54388 5.66173 5.71449 5.86337 5.88074 6.18759 6.25925 6.29395 6.33230 6.39566 6.46923 6.65327 6.78644 6.85936 7.00807 7.14614 7.28832 7.41791 7.70038 7.77731 8.23271 8.56976 8.73710 9.26828 10.81877 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.004686 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.764823 B = 5974.188810 C = 8216.225500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.200 4.200 3 C 0.155 3.845 4 H 0.141 0.859 5 O -0.527 6.527 6 C 0.432 3.568 7 O -0.495 6.495 8 O -0.331 6.331 9 C 0.053 3.947 10 C 0.527 3.473 11 O -0.532 6.532 12 N -0.551 5.551 13 C 0.206 3.794 14 C -0.550 4.550 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.884 5.884 18 Si 0.868 3.132 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.172 3.828 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.131 4.131 26 C -0.115 4.115 27 C -0.124 4.124 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.387 0.613 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.269 0.731 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -9.072 -4.071 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.218 4.218 3 C 0.095 3.905 4 H 0.158 0.842 5 O -0.333 6.333 6 C 0.273 3.727 7 O -0.382 6.382 8 O -0.246 6.246 9 C -0.023 4.023 10 C 0.315 3.685 11 O -0.409 6.409 12 N -0.280 5.280 13 C 0.086 3.914 14 C -0.588 4.588 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.520 5.520 18 Si 0.694 3.306 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.188 1.188 22 C 0.081 3.919 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.144 4.144 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.236 0.764 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.272 -8.447 -4.251 14.713 hybrid contribution 1.575 -1.047 0.418 1.937 sum -9.697 -9.493 -3.833 14.101 Atomic orbital electron populations 1.23977 0.95401 1.02895 0.95334 1.23153 0.96954 0.97309 1.04394 1.20507 0.90316 0.98852 0.80857 0.84171 1.86684 1.51737 1.55683 1.39199 1.24698 0.88953 0.73202 0.85807 1.90734 1.15801 1.44688 1.86948 1.86475 1.40765 1.82964 1.14372 1.22860 0.91167 1.06353 0.81970 1.19865 0.87762 0.76639 0.84255 1.90692 1.13724 1.49503 1.86953 1.45438 1.08666 1.70803 1.03098 1.20042 0.73932 0.99086 0.98319 1.21265 0.92739 0.91674 1.53098 0.90105 1.24834 0.97847 0.95765 0.93876 1.69870 1.13044 1.20773 1.48324 0.86967 0.81180 0.83248 0.79190 1.19546 1.20568 1.18821 1.17484 0.93944 0.93283 0.87184 1.21273 0.96858 0.96432 0.97408 1.20974 0.99133 0.98931 0.94008 1.21055 1.00484 0.94018 0.99373 1.20898 0.97718 0.97857 0.96849 1.21173 1.00238 0.98070 0.94922 0.87626 0.87406 0.86310 0.76401 0.88321 0.86028 0.93968 0.94956 0.92122 0.85981 0.86052 0.86339 0.86121 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 14.32 29.02 0.42 -0.75 16 2 C -0.20 -1.92 9.09 -36.02 -0.33 -2.25 16 3 C 0.16 1.79 3.86 -29.03 -0.11 1.68 16 4 H 0.14 1.43 7.78 -51.93 -0.40 1.02 16 5 O -0.53 -6.09 12.98 -55.14 -0.72 -6.80 16 6 C 0.43 6.70 7.26 36.00 0.26 6.97 16 7 O -0.49 -8.99 16.07 -25.46 -0.41 -9.40 16 8 O -0.33 -5.73 9.74 -45.90 -0.45 -6.18 16 9 C 0.05 0.99 4.61 36.00 0.17 1.16 16 10 C 0.53 10.81 7.61 -10.99 -0.08 10.73 16 11 O -0.53 -11.84 16.27 -14.11 -0.23 -12.07 16 12 N -0.55 -11.37 2.50 -114.74 -0.29 -11.66 16 13 C 0.21 4.49 3.95 -5.20 -0.02 4.47 16 14 C -0.55 -14.27 9.71 -34.44 -0.33 -14.60 16 15 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.88 -25.47 13.96 55.43 0.77 -24.70 16 18 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 22 C 0.17 3.35 4.74 -83.69 -0.40 2.96 16 23 C -0.10 -1.87 9.56 -39.39 -0.38 -2.25 16 24 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 25 C -0.13 -1.81 10.04 -39.55 -0.40 -2.21 16 26 C -0.11 -1.63 10.04 -39.61 -0.40 -2.03 16 27 C -0.12 -2.10 9.69 -39.39 -0.38 -2.48 16 28 H 0.11 0.80 7.83 -52.48 -0.41 0.39 16 29 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.39 3.39 8.79 45.56 0.40 3.79 16 32 H 0.10 1.70 7.25 -51.93 -0.38 1.32 16 33 H 0.12 2.46 7.91 -51.93 -0.41 2.05 16 34 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 35 H 0.03 0.67 5.90 -51.93 -0.31 0.36 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.95 364.89 -7.38 -40.34 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.42 Total: 8.65 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.48 Total: 1.36 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.49 Total: -36.36 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.80 Total: -34.46 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.95 -7.38 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814541615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.669 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds