Wall clock time and date at job start Tue Mar 31 2020 13:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99801 * 2 1 4 4 H 1.09006 * 109.46802 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47071 * 239.99908 * 3 2 1 6 6 C 1.50696 * 109.47166 * 119.99776 * 3 2 1 7 7 O 1.20828 * 119.99986 * 115.00490 * 6 3 2 8 8 O 1.34227 * 119.99970 * 294.99484 * 6 3 2 9 9 C 1.45201 * 117.00008 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47415 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99960 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00541 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99403 * 355.26722 * 12 10 9 14 14 C 1.50696 * 109.47363 * 90.00286 * 13 12 10 15 15 H 1.08006 * 119.99428 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00565 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00242 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99660 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47315 * 89.99757 * 18 16 14 20 20 H 1.48496 * 109.47056 * 209.99821 * 18 16 14 21 21 H 1.48499 * 109.47307 * 329.99596 * 18 16 14 22 22 C 1.39916 * 120.00293 * 175.26995 * 12 10 9 23 23 C 1.38877 * 120.07331 * 291.84743 * 22 12 10 24 24 C 1.38103 * 119.93016 * 179.74533 * 23 22 12 25 25 C 1.38285 * 120.07410 * 0.53173 * 24 23 22 26 26 C 1.38282 * 120.13995 * 359.74517 * 25 24 23 27 27 C 1.38119 * 120.07044 * 359.97438 * 26 25 24 28 28 H 1.08003 * 120.00444 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99586 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00444 * 179.97438 * 2 1 3 31 31 H 0.96705 * 114.00088 * 300.00038 * 5 3 2 32 32 H 1.08997 * 109.47474 * 300.00789 * 9 8 6 33 33 H 1.09003 * 109.46479 * 60.00488 * 9 8 6 34 34 H 1.09002 * 109.47200 * 210.00016 * 13 12 10 35 35 H 1.08998 * 109.47736 * 329.99850 * 13 12 10 36 36 H 0.96998 * 119.99873 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.03014 * 0.02738 * 23 22 12 38 38 H 1.08007 * 119.96348 * 180.27290 * 24 23 22 39 39 H 1.07995 * 119.93257 * 179.71777 * 25 24 23 40 40 H 1.07998 * 119.96789 * 179.97438 * 26 25 24 41 41 H 1.07993 * 120.03954 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 8 2.8850 1.3809 -1.1668 6 6 2.9298 1.3851 1.2305 7 8 4.1330 1.4045 1.1219 8 8 2.3647 1.4349 2.4470 9 6 3.2605 1.5102 3.5873 10 6 2.4526 1.5573 4.8585 11 8 1.2410 1.5295 4.8085 12 7 3.0763 1.6302 6.0511 13 6 4.5380 1.5592 6.1187 14 6 5.1136 2.9482 6.0167 15 1 4.4563 3.7987 5.9115 16 6 6.4793 3.1333 6.0576 17 7 6.9816 4.3454 5.9680 18 14 7.6161 1.6621 6.2388 19 1 7.9761 1.1461 4.8936 20 1 8.8487 2.0746 6.9570 21 1 6.9272 0.5962 7.0098 22 6 2.3277 1.7736 7.2245 23 6 1.6366 2.9531 7.4693 24 6 0.8944 3.0895 8.6259 25 6 0.8478 2.0574 9.5451 26 6 1.5394 0.8838 9.3071 27 6 2.2788 0.7389 8.1495 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.5405 0.6730 -1.2329 32 1 3.9069 0.6327 3.6002 33 1 3.8709 2.4101 3.5108 34 1 4.8365 1.1110 7.0664 35 1 4.9107 0.9500 5.2954 36 1 7.9424 4.4755 5.9964 37 1 1.6759 3.7610 6.7537 38 1 0.3532 4.0049 8.8148 39 1 0.2703 2.1682 10.4509 40 1 1.5013 0.0797 10.0270 41 1 2.8184 -0.1780 7.9640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814541615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:51 Heat of formation + Delta-G solvation = -126.686573 kcal Electronic energy + Delta-G solvation = -26505.343420 eV Core-core repulsion = 22543.952490 eV Total energy + Delta-G solvation = -3961.390930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07869 -41.37057 -39.49419 -38.50974 -37.38268 -36.90716 -34.67162 -34.39977 -31.90700 -31.84335 -30.30928 -29.32726 -27.97348 -24.76562 -23.88296 -23.34693 -22.61755 -21.50334 -20.69699 -19.56263 -19.20899 -18.57917 -18.34558 -17.90353 -17.67864 -17.29519 -16.87502 -16.63559 -16.11715 -15.89594 -15.54797 -15.29987 -14.91701 -14.63906 -14.35535 -14.28586 -14.11232 -13.97529 -13.81092 -13.52956 -13.47595 -13.18268 -12.92569 -12.62749 -12.48470 -12.25479 -12.16207 -12.04633 -11.98398 -11.77617 -11.29792 -11.07999 -10.85168 -10.56892 -10.24056 -9.85690 -9.33405 -8.37144 -6.46620 0.32580 0.48300 0.80940 1.00776 1.27469 1.34273 1.36304 1.36647 1.45730 2.14553 2.28258 2.83177 2.96793 3.26030 3.33951 3.45709 3.67282 3.84461 3.90588 4.01331 4.07930 4.09646 4.26354 4.38721 4.47593 4.54972 4.56897 4.69659 4.78698 4.92539 5.08082 5.10400 5.29525 5.41412 5.52252 5.53551 5.57878 5.60743 5.67641 5.98662 6.12407 6.26490 6.31224 6.52110 6.58040 6.96896 7.19263 8.78938 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.004686 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.764823 B = 5974.188810 C = 8216.225500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.217 4.217 3 C 0.164 3.836 4 H 0.154 0.846 5 O -0.535 6.535 6 C 0.431 3.569 7 O -0.526 6.526 8 O -0.336 6.336 9 C 0.058 3.942 10 C 0.524 3.476 11 O -0.554 6.554 12 N -0.550 5.550 13 C 0.214 3.786 14 C -0.548 4.548 15 H 0.031 0.969 16 C 0.023 3.977 17 N -0.937 5.937 18 Si 0.936 3.064 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.233 1.233 22 C 0.129 3.871 23 C -0.133 4.133 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.106 4.106 27 C -0.135 4.135 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.398 0.602 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.270 0.730 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 -11.977 -2.740 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.235 4.235 3 C 0.103 3.897 4 H 0.171 0.829 5 O -0.343 6.343 6 C 0.274 3.726 7 O -0.414 6.414 8 O -0.251 6.251 9 C -0.018 4.018 10 C 0.313 3.687 11 O -0.432 6.432 12 N -0.279 5.279 13 C 0.094 3.906 14 C -0.586 4.586 15 H 0.050 0.950 16 C -0.177 4.177 17 N -0.576 5.576 18 Si 0.758 3.242 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.156 1.156 22 C 0.039 3.961 23 C -0.153 4.153 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.154 4.154 28 H 0.130 0.870 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.249 0.751 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.162 0.838 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.377 -11.368 -2.916 17.056 hybrid contribution 1.760 -0.041 0.030 1.760 sum -10.617 -11.409 -2.886 15.850 Atomic orbital electron populations 1.24271 0.95043 1.04243 0.92902 1.23123 0.97379 0.96499 1.06517 1.20675 0.89680 1.00694 0.78605 0.82900 1.86659 1.52253 1.56611 1.38778 1.25736 0.89188 0.71664 0.85969 1.90710 1.17344 1.46233 1.87160 1.86509 1.40675 1.83191 1.14723 1.22665 0.91122 1.05901 0.82151 1.20129 0.87647 0.76155 0.84767 1.90653 1.14570 1.50718 1.87271 1.45404 1.08226 1.70384 1.03851 1.19878 0.74797 0.96558 0.99407 1.21396 0.92412 0.92498 1.52307 0.95028 1.25773 0.99624 0.98881 0.93402 1.70034 1.13501 1.23616 1.50429 0.85881 0.78654 0.79864 0.79790 1.18797 1.20651 1.15628 1.17898 0.95589 0.94801 0.87779 1.21302 0.99173 0.96035 0.98795 1.21306 0.98316 1.00668 0.92984 1.21567 0.99492 0.92847 0.99903 1.21409 0.95788 0.99003 0.96221 1.21430 1.01002 0.97739 0.95249 0.86962 0.85425 0.85340 0.75120 0.86662 0.88342 0.92725 0.93044 0.92077 0.88868 0.83753 0.82110 0.82068 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 14.32 67.79 0.97 -0.90 16 2 C -0.22 -3.85 9.09 25.66 0.23 -3.62 16 3 C 0.16 3.68 3.86 29.10 0.11 3.80 16 4 H 0.15 2.99 7.78 -2.38 -0.02 2.98 16 5 O -0.54 -12.03 12.98 -129.95 -1.69 -13.71 16 6 C 0.43 13.54 7.26 71.23 0.52 14.06 16 7 O -0.53 -19.50 16.07 28.38 0.46 -19.04 16 8 O -0.34 -11.90 9.74 -45.04 -0.44 -12.34 16 9 C 0.06 2.26 4.61 71.23 0.33 2.59 16 10 C 0.52 22.26 7.61 87.66 0.67 22.93 16 11 O -0.55 -25.41 16.27 15.72 0.26 -25.16 16 12 N -0.55 -23.28 2.50 -635.31 -1.59 -24.87 16 13 C 0.21 9.35 3.95 85.63 0.34 9.69 16 14 C -0.55 -29.63 9.71 25.60 0.25 -29.38 16 15 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 16 C 0.02 1.26 5.47 84.65 0.46 1.72 16 17 N -0.94 -56.28 13.96 21.45 0.30 -55.98 16 18 Si 0.94 40.11 27.47 68.60 1.88 42.00 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.23 -8.81 6.54 99.48 0.65 -8.16 16 22 C 0.13 5.11 4.74 38.16 0.18 5.29 16 23 C -0.13 -5.18 9.56 22.39 0.21 -4.96 16 24 C -0.11 -3.39 10.04 22.25 0.22 -3.16 16 25 C -0.12 -2.89 10.04 22.29 0.22 -2.66 16 26 C -0.11 -2.63 10.04 22.25 0.22 -2.40 16 27 C -0.13 -4.30 9.69 22.40 0.22 -4.09 16 28 H 0.11 1.48 7.83 -2.91 -0.02 1.46 16 29 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 30 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.40 6.77 8.79 -74.05 -0.65 6.12 16 32 H 0.12 4.00 7.25 -2.39 -0.02 3.98 16 33 H 0.10 4.26 7.91 -2.39 -0.02 4.24 16 34 H 0.05 2.27 6.92 -2.39 -0.02 2.26 16 35 H 0.05 2.06 5.90 -2.39 -0.01 2.05 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.09 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -75.58 364.89 4.69 -70.89 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.35 Total: 29.32 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.16 Total: 8.90 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.29 Total: -80.85 kcal Atomic # 8 Polarization: -68.84 SS G_CDS: -1.41 Total: -70.25 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.88 Total: 42.00 kcal Total: -75.58 4.69 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814541615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.798 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds